data_4OCZ # _model_server_result.job_id 1xyQOB-YC34BFZLMAC2ziA _model_server_result.datetime_utc '2024-10-27 18:29:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ocz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4OCZ # _exptl.entry_id 4OCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.371 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-(2-methylpropanoyl)piperidin-4-yl]-3-[4-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OCZ _cell.length_a 92.229 _cell.length_b 92.229 _cell.length_c 243.373 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.1145 79.872657 40.562167 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc2 A OD1 ASP 9 A ASP 9 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 A O ASP 11 A ASP 11 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 A OD1 ASP 185 A ASP 185 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc5 B O1 PO4 . A PO4 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc6 C MG MG . A MG 602 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc7 C MG MG . A MG 602 1_555 E O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? # _chem_comp.formula 'C17 H22 F3 N3 O2' _chem_comp.formula_weight 357.371 _chem_comp.id 2RU _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-(2-methylpropanoyl)piperidin-4-yl]-3-[4-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F21 C20 2RU sing 1 n n F22 C20 2RU sing 2 n n C20 F23 2RU sing 3 n n C20 C19 2RU sing 4 n n C18 C19 2RU doub 5 n y C18 C17 2RU sing 6 n y C19 C24 2RU sing 7 n y C17 C1 2RU doub 8 n y C24 C25 2RU doub 9 n y C25 C1 2RU sing 10 n y C1 N2 2RU sing 11 n n N2 C3 2RU sing 12 n n C3 O16 2RU doub 13 n n C3 N4 2RU sing 14 n n N4 C5 2RU sing 15 n n C5 C15 2RU sing 16 n n C5 C6 2RU sing 17 n n C15 C14 2RU sing 18 n n C6 C7 2RU sing 19 n n C12 C10 2RU sing 20 n n C14 N8 2RU sing 21 n n C7 N8 2RU sing 22 n n N8 C9 2RU sing 23 n n C10 C9 2RU sing 24 n n C10 C11 2RU sing 25 n n C9 O13 2RU doub 26 n n C18 H1 2RU sing 27 n n C17 H2 2RU sing 28 n n C24 H3 2RU sing 29 n n C25 H4 2RU sing 30 n n N2 H5 2RU sing 31 n n N4 H6 2RU sing 32 n n C5 H7 2RU sing 33 n n C15 H8 2RU sing 34 n n C15 H9 2RU sing 35 n n C14 H10 2RU sing 36 n n C14 H11 2RU sing 37 n n C7 H12 2RU sing 38 n n C7 H13 2RU sing 39 n n C6 H14 2RU sing 40 n n C6 H15 2RU sing 41 n n C10 H16 2RU sing 42 n n C12 H17 2RU sing 43 n n C12 H18 2RU sing 44 n n C12 H19 2RU sing 45 n n C11 H20 2RU sing 46 n n C11 H21 2RU sing 47 n n C11 H22 2RU sing 48 n n # _atom_sites.entry_id 4OCZ _atom_sites.fract_transf_matrix[1][1] 0.010843 _atom_sites.fract_transf_matrix[1][2] 0.00626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 1 PO4 PO4 . C 3 MG A 1 602 1 MG MG . D 4 2RU A 1 603 1 2RU 238 . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F23 2RU . . . D 4 21.383 7.792 12.847 1 67.88 ? F23 2RU 603 A 1 HETATM 2 C C20 2RU . . . D 4 20.37 8.254 12.148 1 68.72 ? C20 2RU 603 A 1 HETATM 3 F F21 2RU . . . D 4 20.783 9.001 11.134 1 67.34 ? F21 2RU 603 A 1 HETATM 4 F F22 2RU . . . D 4 19.735 7.159 11.805 1 77.26 ? F22 2RU 603 A 1 HETATM 5 C C19 2RU . . . D 4 19.415 9.069 12.95 1 65.87 ? C19 2RU 603 A 1 HETATM 6 C C18 2RU . . . D 4 19.399 10.464 12.937 1 63.03 ? C18 2RU 603 A 1 HETATM 7 C C17 2RU . . . D 4 18.464 11.149 13.721 1 67.54 ? C17 2RU 603 A 1 HETATM 8 C C24 2RU . . . D 4 18.51 8.369 13.724 1 66.68 ? C24 2RU 603 A 1 HETATM 9 C C25 2RU . . . D 4 17.599 9.058 14.509 1 70.68 ? C25 2RU 603 A 1 HETATM 10 C C1 2RU . . . D 4 17.543 10.452 14.53 1 68.5 ? C1 2RU 603 A 1 HETATM 11 N N2 2RU . . . D 4 16.687 11.126 15.374 1 67.6 ? N2 2RU 603 A 1 HETATM 12 C C3 2RU . . . D 4 16.072 10.639 16.485 1 68.27 ? C3 2RU 603 A 1 HETATM 13 O O16 2RU . . . D 4 16.222 9.49 16.864 1 63.11 ? O16 2RU 603 A 1 HETATM 14 N N4 2RU . . . D 4 15.333 11.518 17.203 1 73.16 ? N4 2RU 603 A 1 HETATM 15 C C5 2RU . . . D 4 14.788 11.337 18.562 1 74.43 ? C5 2RU 603 A 1 HETATM 16 C C15 2RU . . . D 4 13.636 10.344 18.737 1 71.33 ? C15 2RU 603 A 1 HETATM 17 C C14 2RU . . . D 4 12.999 10.335 20.145 1 65.2 ? C14 2RU 603 A 1 HETATM 18 N N8 2RU . . . D 4 12.587 11.703 20.536 1 66.56 ? N8 2RU 603 A 1 HETATM 19 C C7 2RU . . . D 4 13.676 12.693 20.422 1 75.53 ? C7 2RU 603 A 1 HETATM 20 C C6 2RU . . . D 4 14.28 12.708 19.017 1 77.61 ? C6 2RU 603 A 1 HETATM 21 C C9 2RU . . . D 4 11.387 12.087 21.041 1 62.27 ? C9 2RU 603 A 1 HETATM 22 O O13 2RU . . . D 4 11.214 13.206 21.558 1 70.11 ? O13 2RU 603 A 1 HETATM 23 C C10 2RU . . . D 4 10.224 11.127 21.019 1 55.05 ? C10 2RU 603 A 1 HETATM 24 C C12 2RU . . . D 4 9.733 10.971 19.603 1 54.22 ? C12 2RU 603 A 1 HETATM 25 C C11 2RU . . . D 4 9.072 11.634 21.88 1 55.97 ? C11 2RU 603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #