data_4OD0 # _model_server_result.job_id DeKR41AAg7oX1Xd3_eiP9A _model_server_result.datetime_utc '2024-10-18 14:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4od0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4OD0 # _exptl.entry_id 4OD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OD0 _cell.length_a 92.136 _cell.length_b 92.136 _cell.length_c 243.354 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.068 79.792117 40.559 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc2 A OD1 ASP 9 A ASP 9 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 A O ASP 11 A ASP 11 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 A OD1 ASP 185 A ASP 185 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc5 B O1 PO4 . A PO4 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc6 C MG MG . A MG 602 1_555 E O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc7 C MG MG . A MG 602 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? # _chem_comp.formula 'C16 H20 F3 N3 O3' _chem_comp.formula_weight 359.344 _chem_comp.id 2RV _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F21 C20 2RV sing 1 n n O19 C20 2RV sing 2 n n O19 C18 2RV sing 3 n n C20 F22 2RV sing 4 n n C20 F23 2RV sing 5 n n C18 C24 2RV doub 6 n y C18 C17 2RV sing 7 n y C24 C25 2RV sing 8 n y C17 C16 2RV doub 9 n y C25 C1 2RV doub 10 n y C16 C1 2RV sing 11 n y C1 N2 2RV sing 12 n n N2 C3 2RV sing 13 n n C3 O15 2RV doub 14 n n C3 N4 2RV sing 15 n n N4 C5 2RV sing 16 n n C5 C14 2RV sing 17 n n C5 C6 2RV sing 18 n n C14 C13 2RV sing 19 n n C6 C7 2RV sing 20 n n C7 N8 2RV sing 21 n n N8 C13 2RV sing 22 n n N8 C9 2RV sing 23 n n C10 C9 2RV sing 24 n n C10 C11 2RV sing 25 n n C9 O12 2RV doub 26 n n C17 H1 2RV sing 27 n n C16 H2 2RV sing 28 n n C24 H3 2RV sing 29 n n C25 H4 2RV sing 30 n n N2 H5 2RV sing 31 n n N4 H6 2RV sing 32 n n C5 H7 2RV sing 33 n n C14 H8 2RV sing 34 n n C14 H9 2RV sing 35 n n C13 H10 2RV sing 36 n n C13 H11 2RV sing 37 n n C7 H12 2RV sing 38 n n C7 H13 2RV sing 39 n n C6 H14 2RV sing 40 n n C6 H15 2RV sing 41 n n C10 H16 2RV sing 42 n n C10 H17 2RV sing 43 n n C11 H18 2RV sing 44 n n C11 H19 2RV sing 45 n n C11 H20 2RV sing 46 n n # _atom_sites.entry_id 4OD0 _atom_sites.fract_transf_matrix[1][1] 0.010854 _atom_sites.fract_transf_matrix[1][2] 0.006266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 1 PO4 PO4 . C 3 MG A 1 602 1 MG MG . D 4 2RV A 1 603 1 2RV NEW . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 3 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 5 HOH HOH . E 5 HOH A 6 706 6 HOH HOH . E 5 HOH A 7 707 7 HOH HOH . E 5 HOH A 8 708 8 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 10 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 13 HOH HOH . E 5 HOH A 14 714 14 HOH HOH . E 5 HOH A 15 715 15 HOH HOH . E 5 HOH A 16 716 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F23 2RV . . . D 4 21.424 7.925 12.918 1 36.42 ? F23 2RV 603 A 1 HETATM 2 C C20 2RV . . . D 4 20.551 7.346 12.119 1 34.55 ? C20 2RV 603 A 1 HETATM 3 F F21 2RV . . . D 4 21.188 6.713 11.161 1 32.8 ? F21 2RV 603 A 1 HETATM 4 F F22 2RV . . . D 4 19.832 6.493 12.834 1 33.39 ? F22 2RV 603 A 1 HETATM 5 O O19 2RV . . . D 4 19.705 8.343 11.553 1 35.35 ? O19 2RV 603 A 1 HETATM 6 C C18 2RV . . . D 4 18.926 9.036 12.432 1 39.07 ? C18 2RV 603 A 1 HETATM 7 C C17 2RV . . . D 4 17.922 8.407 13.177 1 40.38 ? C17 2RV 603 A 1 HETATM 8 C C16 2RV . . . D 4 17.147 9.127 14.078 1 39.6 ? C16 2RV 603 A 1 HETATM 9 C C24 2RV . . . D 4 19.16 10.381 12.612 1 38.49 ? C24 2RV 603 A 1 HETATM 10 C C25 2RV . . . D 4 18.372 11.093 13.497 1 39.71 ? C25 2RV 603 A 1 HETATM 11 C C1 2RV . . . D 4 17.353 10.489 14.236 1 39.74 ? C1 2RV 603 A 1 HETATM 12 N N2 2RV . . . D 4 16.721 11.258 15.17 1 39.78 ? N2 2RV 603 A 1 HETATM 13 C C3 2RV . . . D 4 16.111 10.8 16.272 1 39.29 ? C3 2RV 603 A 1 HETATM 14 O O15 2RV . . . D 4 16.089 9.611 16.531 1 36.59 ? O15 2RV 603 A 1 HETATM 15 N N4 2RV . . . D 4 15.497 11.747 17.004 1 40.38 ? N4 2RV 603 A 1 HETATM 16 C C5 2RV . . . D 4 14.457 11.572 18.012 1 42.69 ? C5 2RV 603 A 1 HETATM 17 C C14 2RV . . . D 4 14.31 12.874 18.792 1 43.76 ? C14 2RV 603 A 1 HETATM 18 C C13 2RV . . . D 4 13.752 12.68 20.204 1 45.41 ? C13 2RV 603 A 1 HETATM 19 N N8 2RV . . . D 4 12.791 11.566 20.203 1 45.98 ? N8 2RV 603 A 1 HETATM 20 C C7 2RV . . . D 4 13.354 10.255 19.843 1 46.44 ? C7 2RV 603 A 1 HETATM 21 C C6 2RV . . . D 4 14.65 10.453 19.033 1 44.67 ? C6 2RV 603 A 1 HETATM 22 C C9 2RV . . . D 4 11.513 11.777 20.542 1 45.33 ? C9 2RV 603 A 1 HETATM 23 O O12 2RV . . . D 4 11.183 12.796 21.136 1 51.09 ? O12 2RV 603 A 1 HETATM 24 C C10 2RV . . . D 4 10.437 10.758 20.224 1 43.3 ? C10 2RV 603 A 1 HETATM 25 C C11 2RV . . . D 4 9.262 10.974 21.167 1 42.56 ? C11 2RV 603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #