data_4OD3 # _model_server_result.job_id PQvBoayyUbk8C1uRgBGDqg _model_server_result.datetime_utc '2024-11-29 20:17:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4od3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4OD3 # _exptl.entry_id 4OD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OD3 _cell.length_a 70.55 _cell.length_b 87.268 _cell.length_c 224.351 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 198 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 105 H CYS 100 1_555 B SG CYS 121 H CYS 100 1_555 A ? ? Q ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 171 H CYS 140 1_555 B SG CYS 227 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A OD2 ASP 143 L ASP 138 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc2 A OD2 ASP 156 L ASP 151 1_555 D ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 A ND1 HIS 193 L HIS 188 1_555 D ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 C ZN ZN . L ZN 301 1_555 B NE2 HIS 195 H HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 4OD3 _atom_sites.fract_transf_matrix[1][1] 0.014174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 301 1 ZN ZN . D 3 ZN L 1 302 2 ZN ZN . E 4 MES H 1 301 1 MES MES . F 5 HOH L 1 401 1 HOH HOH . F 5 HOH L 2 402 2 HOH HOH . F 5 HOH L 3 403 4 HOH HOH . F 5 HOH L 4 404 5 HOH HOH . F 5 HOH L 5 405 6 HOH HOH . F 5 HOH L 6 406 8 HOH HOH . F 5 HOH L 7 407 11 HOH HOH . F 5 HOH L 8 408 13 HOH HOH . F 5 HOH L 9 409 14 HOH HOH . F 5 HOH L 10 410 16 HOH HOH . G 5 HOH H 1 401 3 HOH HOH . G 5 HOH H 2 402 7 HOH HOH . G 5 HOH H 3 403 9 HOH HOH . G 5 HOH H 4 404 10 HOH HOH . G 5 HOH H 5 405 12 HOH HOH . G 5 HOH H 6 406 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . E 4 -25.007 -31.624 -61.023 1 65.29 ? O1 MES 301 H 1 HETATM 2 C C2 MES . . . E 4 -24.529 -31.383 -59.699 1 66.57 ? C2 MES 301 H 1 HETATM 3 C C3 MES . . . E 4 -24.304 -32.678 -58.922 1 66.84 ? C3 MES 301 H 1 HETATM 4 N N4 MES . . . E 4 -23.514 -33.584 -59.747 1 65.74 ? N4 MES 301 H 1 HETATM 5 C C5 MES . . . E 4 -24.055 -33.893 -61.066 1 64.91 ? C5 MES 301 H 1 HETATM 6 C C6 MES . . . E 4 -25.267 -32.996 -61.318 1 64.57 ? C6 MES 301 H 1 HETATM 7 C C7 MES . . . E 4 -23.028 -34.744 -59.008 1 65.78 ? C7 MES 301 H 1 HETATM 8 C C8 MES . . . E 4 -21.745 -35.229 -59.671 1 65.75 ? C8 MES 301 H 1 HETATM 9 S S MES . . . E 4 -21.063 -36.445 -58.762 1 89.71 ? S MES 301 H 1 HETATM 10 O O1S MES . . . E 4 -19.825 -35.964 -58.106 1 89.97 ? O1S MES 301 H 1 HETATM 11 O O2S MES . . . E 4 -20.716 -37.561 -59.672 1 89.68 ? O2S MES 301 H 1 HETATM 12 O O3S MES . . . E 4 -22.009 -36.908 -57.719 1 89.82 ? O3S MES 301 H 1 HETATM 13 H H21 MES . . . E 4 -25.263 -30.776 -59.169 1 79.89 ? H21 MES 301 H 1 HETATM 14 H H22 MES . . . E 4 -23.598 -30.813 -59.736 1 79.89 ? H22 MES 301 H 1 HETATM 15 H H31 MES . . . E 4 -25.258 -33.137 -58.652 1 80.2 ? H31 MES 301 H 1 HETATM 16 H H32 MES . . . E 4 -23.76 -32.459 -58.003 1 80.2 ? H32 MES 301 H 1 HETATM 17 H HN4 MES . . . E 4 -22.679 -33.06 -59.948 1 78.88 ? HN4 MES 301 H 1 HETATM 18 H H51 MES . . . E 4 -23.302 -33.746 -61.841 1 77.89 ? H51 MES 301 H 1 HETATM 19 H H52 MES . . . E 4 -24.373 -34.937 -61.096 1 77.89 ? H52 MES 301 H 1 HETATM 20 H H61 MES . . . E 4 -26.096 -33.338 -60.7 1 77.48 ? H61 MES 301 H 1 HETATM 21 H H62 MES . . . E 4 -25.573 -33.089 -62.362 1 77.48 ? H62 MES 301 H 1 HETATM 22 H H71 MES . . . E 4 -22.829 -34.472 -57.97 1 78.94 ? H71 MES 301 H 1 HETATM 23 H H72 MES . . . E 4 -23.779 -35.537 -59.018 1 78.94 ? H72 MES 301 H 1 HETATM 24 H H81 MES . . . E 4 -21.961 -35.597 -60.676 1 78.9 ? H81 MES 301 H 1 HETATM 25 H H82 MES . . . E 4 -21.038 -34.402 -59.755 1 78.9 ? H82 MES 301 H 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #