data_4OD5
#
_model_server_result.job_id            iMtlw19gQuU0HHzhjwUgUA 
_model_server_result.datetime_utc      '2024-11-05 00:56:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4od5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":302}' 
#
_entry.id    4OD5 
#
_exptl.entry_id    4OD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              138.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'P-HYDROXYBENZOIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OD5 
_cell.length_a            70.104 
_cell.length_b            122.829 
_cell.length_c            423.416 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,EA 1 1 
B,K,L,M,N,FA 2 1 
C,O,P,Q,R,GA 3 1 
D,S,T,U,V,HA 4 1 
E,W,X,Y,Z,IA 5 1 
F,AA,BA,CA,DA,JA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 P N N 
? 3 T N N 
? 3 X N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 77 A ASP 58 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 G O1A GST . A GST 301 1_555 I MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc3 G O3A GST . A GST 301 1_555 J MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 J MG MG . A MG 304 1_555 EA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 B OD1 ASP 77 B ASP 58 1_555 M MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc6 K O1A GST . B GST 301 1_555 M MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc7 K O3A GST . B GST 301 1_555 N MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc8 K O3B GST . B GST 301 1_555 N MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc9 N MG MG . B MG 304 1_555 FA O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc10 C OD1 ASP 77 C ASP 58 1_555 Q MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc11 O O1A GST . C GST 301 1_555 Q MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc12 O O3A GST . C GST 301 1_555 R MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc13 O O3B GST . C GST 301 1_555 R MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
metalc ? metalc14 R MG MG . C MG 304 1_555 GA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc15 D OD1 ASP 77 D ASP 58 1_555 U MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc16 S O1A GST . D GST 301 1_555 U MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc17 S O3A GST . D GST 301 1_555 V MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc18 V MG MG . D MG 304 1_555 HA O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc19 E OD1 ASP 77 E ASP 58 1_555 Y MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc20 W O1A GST . E GST 301 1_555 Y MG MG . E MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc21 W O3A GST . E GST 301 1_555 Z MG MG . E MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc22 Z MG MG . E MG 304 1_555 IA O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc23 F OD1 ASP 77 F ASP 58 1_555 CA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc24 AA O1A GST . F GST 301 1_555 CA MG MG . F MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc25 AA O3A GST . F GST 301 1_555 DA MG MG . F MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc26 AA O3B GST . F GST 301 1_555 DA MG MG . F MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc27 DA MG MG . F MG 304 1_555 JA O HOH . F HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C7 H6 O3' 
_chem_comp.formula_weight    138.121 
_chem_comp.id                PHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'P-HYDROXYBENZOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1' O1' PHB doub 262 n n 
C1' O2' PHB sing 263 n n 
C1' C1 PHB sing 264 n n 
O2' HO2' PHB sing 265 n n 
C1 C2 PHB sing 266 n y 
C1 C6 PHB doub 267 n y 
C2 C3 PHB doub 268 n y 
C2 H2 PHB sing 269 n n 
C3 C4 PHB sing 270 n y 
C3 H3 PHB sing 271 n n 
C4 C5 PHB doub 272 n y 
C4 O4 PHB sing 273 n n 
C5 C6 PHB sing 274 n y 
C5 H5 PHB sing 275 n n 
C6 H6 PHB sing 276 n n 
O4 HO4 PHB sing 277 n n 
#
_atom_sites.entry_id                     4OD5 
_atom_sites.fract_transf_matrix[1][1]    0.014265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GST A 1 301 395 GST GST . 
H 3 PHB A 1 302 396 PHB PHB . 
I 4 MG A 1 303 398 MG MG . 
J 4 MG A 1 304 400 MG MG . 
K 2 GST B 1 301 395 GST GST . 
L 3 PHB B 1 302 396 PHB PHB . 
M 4 MG B 1 303 398 MG MG . 
N 4 MG B 1 304 400 MG MG . 
O 2 GST C 1 301 395 GST GST . 
P 3 PHB C 1 302 396 PHB PHB . 
Q 4 MG C 1 303 398 MG MG . 
R 4 MG C 1 304 400 MG MG . 
S 2 GST D 1 301 395 GST GST . 
T 3 PHB D 1 302 396 PHB PHB . 
U 4 MG D 1 303 398 MG MG . 
V 4 MG D 1 304 400 MG MG . 
W 2 GST E 1 301 395 GST GST . 
X 3 PHB E 1 302 396 PHB PHB . 
Y 4 MG E 1 303 398 MG MG . 
Z 4 MG E 1 304 400 MG MG . 
AA 2 GST F 1 301 395 GST GST . 
BA 3 PHB F 1 302 396 PHB PHB . 
CA 4 MG F 1 303 398 MG MG . 
DA 4 MG F 1 304 400 MG MG . 
EA 5 HOH A 1 401 397 HOH HOH . 
FA 5 HOH B 1 401 397 HOH HOH . 
GA 5 HOH C 1 401 397 HOH HOH . 
HA 5 HOH D 1 401 397 HOH HOH . 
IA 5 HOH E 1 401 397 HOH HOH . 
JA 5 HOH F 1 401 397 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' PHB . . . P 3 42.24 50.688 21.013 1 65.89 ? C1' PHB 302 C 1 
HETATM 2 O O1' PHB . . . P 3 42.072 51.258 19.9 1 49.03 ? O1' PHB 302 C 1 
HETATM 3 O O2' PHB . . . P 3 42.437 49.447 21.069 1 49.79 ? O2' PHB 302 C 1 
HETATM 4 C C1 PHB . . . P 3 42.211 51.473 22.301 1 87.24 ? C1 PHB 302 C 1 
HETATM 5 C C2 PHB . . . P 3 41.007 51.682 22.951 1 91.39 ? C2 PHB 302 C 1 
HETATM 6 C C3 PHB . . . P 3 40.985 52.395 24.137 1 98.28 ? C3 PHB 302 C 1 
HETATM 7 C C4 PHB . . . P 3 42.165 52.894 24.669 1 96.07 ? C4 PHB 302 C 1 
HETATM 8 C C5 PHB . . . P 3 43.369 52.678 24.017 1 97.39 ? C5 PHB 302 C 1 
HETATM 9 C C6 PHB . . . P 3 43.392 51.965 22.831 1 99.18 ? C6 PHB 302 C 1 
HETATM 10 O O4 PHB . . . P 3 42.141 53.62 25.876 1 86.29 ? O4 PHB 302 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#