data_4ODI # _model_server_result.job_id 6FEiBCjQmF4DXX8-ClieYA _model_server_result.datetime_utc '2024-11-27 03:04:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4odi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4ODI # _exptl.entry_id 4ODI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ODI _cell.length_a 97.182 _cell.length_b 149.474 _cell.length_c 72.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ODI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 155 A TYR 155 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 A O VAL 158 A VAL 158 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 A OD1 ASN 160 A ASN 160 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 E NA NA . A NA 301 1_555 I O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 B O TYR 155 B TYR 155 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc6 B O VAL 158 B VAL 158 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 B OD1 ASN 160 B ASN 160 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 F NA NA . B NA 301 1_555 J O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc9 F NA NA . B NA 301 1_555 J O HOH . B HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc10 C O TYR 155 C TYR 155 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 C O VAL 158 C VAL 158 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc12 C OD1 ASN 160 C ASN 160 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 G NA NA . C NA 301 1_555 K O HOH . C HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc14 D O TYR 155 D TYR 155 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc15 D O VAL 158 D VAL 158 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc16 D OD1 ASN 160 D ASN 160 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ODI _atom_sites.fract_transf_matrix[1][1] 0.01029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 301 1 NA NA . F 2 NA B 1 301 2 NA NA . G 2 NA C 1 301 3 NA NA . H 2 NA D 1 301 4 NA NA . I 3 HOH A 1 401 5 HOH HOH . I 3 HOH A 2 402 6 HOH HOH . I 3 HOH A 3 403 7 HOH HOH . I 3 HOH A 4 404 8 HOH HOH . I 3 HOH A 5 405 11 HOH HOH . I 3 HOH A 6 406 17 HOH HOH . I 3 HOH A 7 407 18 HOH HOH . I 3 HOH A 8 408 19 HOH HOH . I 3 HOH A 9 409 22 HOH HOH . I 3 HOH A 10 410 23 HOH HOH . I 3 HOH A 11 411 24 HOH HOH . I 3 HOH A 12 412 26 HOH HOH . I 3 HOH A 13 413 27 HOH HOH . I 3 HOH A 14 414 28 HOH HOH . I 3 HOH A 15 415 30 HOH HOH . I 3 HOH A 16 416 37 HOH HOH . I 3 HOH A 17 417 39 HOH HOH . I 3 HOH A 18 418 41 HOH HOH . I 3 HOH A 19 419 44 HOH HOH . I 3 HOH A 20 420 49 HOH HOH . I 3 HOH A 21 421 50 HOH HOH . I 3 HOH A 22 422 52 HOH HOH . I 3 HOH A 23 423 62 HOH HOH . I 3 HOH A 24 424 65 HOH HOH . I 3 HOH A 25 425 67 HOH HOH . I 3 HOH A 26 426 74 HOH HOH . I 3 HOH A 27 427 80 HOH HOH . I 3 HOH A 28 428 81 HOH HOH . I 3 HOH A 29 429 82 HOH HOH . I 3 HOH A 30 430 92 HOH HOH . I 3 HOH A 31 431 93 HOH HOH . I 3 HOH A 32 432 95 HOH HOH . I 3 HOH A 33 433 96 HOH HOH . I 3 HOH A 34 434 97 HOH HOH . I 3 HOH A 35 435 98 HOH HOH . I 3 HOH A 36 436 100 HOH HOH . I 3 HOH A 37 437 101 HOH HOH . I 3 HOH A 38 438 102 HOH HOH . I 3 HOH A 39 439 104 HOH HOH . I 3 HOH A 40 440 105 HOH HOH . I 3 HOH A 41 441 106 HOH HOH . I 3 HOH A 42 442 107 HOH HOH . I 3 HOH A 43 443 145 HOH HOH . I 3 HOH A 44 444 146 HOH HOH . I 3 HOH A 45 445 148 HOH HOH . I 3 HOH A 46 446 149 HOH HOH . I 3 HOH A 47 447 150 HOH HOH . I 3 HOH A 48 448 151 HOH HOH . I 3 HOH A 49 449 152 HOH HOH . I 3 HOH A 50 450 154 HOH HOH . I 3 HOH A 51 451 155 HOH HOH . I 3 HOH A 52 452 156 HOH HOH . I 3 HOH A 53 453 165 HOH HOH . I 3 HOH A 54 454 166 HOH HOH . J 3 HOH B 1 401 9 HOH HOH . J 3 HOH B 2 402 10 HOH HOH . J 3 HOH B 3 403 13 HOH HOH . J 3 HOH B 4 404 14 HOH HOH . J 3 HOH B 5 405 15 HOH HOH . J 3 HOH B 6 406 16 HOH HOH . J 3 HOH B 7 407 21 HOH HOH . J 3 HOH B 8 408 25 HOH HOH . J 3 HOH B 9 409 29 HOH HOH . J 3 HOH B 10 410 32 HOH HOH . J 3 HOH B 11 411 34 HOH HOH . J 3 HOH B 12 412 36 HOH HOH . J 3 HOH B 13 413 38 HOH HOH . J 3 HOH B 14 414 43 HOH HOH . J 3 HOH B 15 415 45 HOH HOH . J 3 HOH B 16 416 46 HOH HOH . J 3 HOH B 17 417 48 HOH HOH . J 3 HOH B 18 418 56 HOH HOH . J 3 HOH B 19 419 57 HOH HOH . J 3 HOH B 20 420 58 HOH HOH . J 3 HOH B 21 421 63 HOH HOH . J 3 HOH B 22 422 66 HOH HOH . J 3 HOH B 23 423 70 HOH HOH . J 3 HOH B 24 424 72 HOH HOH . J 3 HOH B 25 425 73 HOH HOH . J 3 HOH B 26 426 76 HOH HOH . J 3 HOH B 27 427 83 HOH HOH . J 3 HOH B 28 428 84 HOH HOH . J 3 HOH B 29 429 85 HOH HOH . J 3 HOH B 30 430 86 HOH HOH . J 3 HOH B 31 431 87 HOH HOH . J 3 HOH B 32 432 88 HOH HOH . J 3 HOH B 33 433 99 HOH HOH . J 3 HOH B 34 434 108 HOH HOH . J 3 HOH B 35 435 109 HOH HOH . J 3 HOH B 36 436 110 HOH HOH . J 3 HOH B 37 437 111 HOH HOH . J 3 HOH B 38 438 112 HOH HOH . J 3 HOH B 39 439 113 HOH HOH . J 3 HOH B 40 440 114 HOH HOH . J 3 HOH B 41 441 115 HOH HOH . J 3 HOH B 42 442 118 HOH HOH . J 3 HOH B 43 443 120 HOH HOH . J 3 HOH B 44 444 121 HOH HOH . J 3 HOH B 45 445 144 HOH HOH . J 3 HOH B 46 446 153 HOH HOH . J 3 HOH B 47 447 157 HOH HOH . J 3 HOH B 48 448 158 HOH HOH . J 3 HOH B 49 449 159 HOH HOH . J 3 HOH B 50 450 160 HOH HOH . J 3 HOH B 51 451 162 HOH HOH . J 3 HOH B 52 452 163 HOH HOH . J 3 HOH B 53 453 168 HOH HOH . K 3 HOH C 1 401 12 HOH HOH . K 3 HOH C 2 402 20 HOH HOH . K 3 HOH C 3 403 31 HOH HOH . K 3 HOH C 4 404 35 HOH HOH . K 3 HOH C 5 405 40 HOH HOH . K 3 HOH C 6 406 47 HOH HOH . K 3 HOH C 7 407 53 HOH HOH . K 3 HOH C 8 408 54 HOH HOH . K 3 HOH C 9 409 55 HOH HOH . K 3 HOH C 10 410 59 HOH HOH . K 3 HOH C 11 411 60 HOH HOH . K 3 HOH C 12 412 69 HOH HOH . K 3 HOH C 13 413 71 HOH HOH . K 3 HOH C 14 414 77 HOH HOH . K 3 HOH C 15 415 78 HOH HOH . K 3 HOH C 16 416 79 HOH HOH . K 3 HOH C 17 417 89 HOH HOH . K 3 HOH C 18 418 90 HOH HOH . K 3 HOH C 19 419 91 HOH HOH . K 3 HOH C 20 420 94 HOH HOH . K 3 HOH C 21 421 103 HOH HOH . K 3 HOH C 22 422 122 HOH HOH . K 3 HOH C 23 423 123 HOH HOH . K 3 HOH C 24 424 124 HOH HOH . K 3 HOH C 25 425 125 HOH HOH . K 3 HOH C 26 426 126 HOH HOH . K 3 HOH C 27 427 127 HOH HOH . K 3 HOH C 28 428 128 HOH HOH . K 3 HOH C 29 429 129 HOH HOH . K 3 HOH C 30 430 130 HOH HOH . K 3 HOH C 31 431 131 HOH HOH . K 3 HOH C 32 432 132 HOH HOH . K 3 HOH C 33 433 133 HOH HOH . K 3 HOH C 34 434 134 HOH HOH . K 3 HOH C 35 435 135 HOH HOH . K 3 HOH C 36 436 136 HOH HOH . K 3 HOH C 37 437 137 HOH HOH . K 3 HOH C 38 438 138 HOH HOH . K 3 HOH C 39 439 147 HOH HOH . K 3 HOH C 40 440 164 HOH HOH . K 3 HOH C 41 441 167 HOH HOH . L 3 HOH D 1 401 33 HOH HOH . L 3 HOH D 2 402 42 HOH HOH . L 3 HOH D 3 403 51 HOH HOH . L 3 HOH D 4 404 61 HOH HOH . L 3 HOH D 5 405 64 HOH HOH . L 3 HOH D 6 406 68 HOH HOH . L 3 HOH D 7 407 75 HOH HOH . L 3 HOH D 8 408 116 HOH HOH . L 3 HOH D 9 409 117 HOH HOH . L 3 HOH D 10 410 119 HOH HOH . L 3 HOH D 11 411 139 HOH HOH . L 3 HOH D 12 412 140 HOH HOH . L 3 HOH D 13 413 141 HOH HOH . L 3 HOH D 14 414 142 HOH HOH . L 3 HOH D 15 415 143 HOH HOH . L 3 HOH D 16 416 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 48.299 _atom_site.Cartn_y 45.323 _atom_site.Cartn_z -12.077 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #