data_4ODI
#
_model_server_result.job_id            vWRWFTw2O7VZJuxE-7p6Tw 
_model_server_result.datetime_utc      '2024-11-14 16:52:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4odi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    4ODI 
#
_exptl.entry_id    4ODI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ODI 
_cell.length_a            97.182 
_cell.length_b            149.474 
_cell.length_c            72.12 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ODI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 155 A TYR 155 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc2 A O VAL 158 A VAL 158 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc3 A OD1 ASN 160 A ASN 160 1_555 E NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc4 E NA NA . A NA 301 1_555 I O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc5 B O TYR 155 B TYR 155 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc6 B O VAL 158 B VAL 158 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc7 B OD1 ASN 160 B ASN 160 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc8 F NA NA . B NA 301 1_555 J O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc9 F NA NA . B NA 301 1_555 J O HOH . B HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc10 C O TYR 155 C TYR 155 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc11 C O VAL 158 C VAL 158 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc12 C OD1 ASN 160 C ASN 160 1_555 G NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc13 G NA NA . C NA 301 1_555 K O HOH . C HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc14 D O TYR 155 D TYR 155 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc15 D O VAL 158 D VAL 158 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc16 D OD1 ASN 160 D ASN 160 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4ODI 
_atom_sites.fract_transf_matrix[1][1]    0.01029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 301 1 NA NA . 
F 2 NA B 1 301 2 NA NA . 
G 2 NA C 1 301 3 NA NA . 
H 2 NA D 1 301 4 NA NA . 
I 3 HOH A 1 401 5 HOH HOH . 
I 3 HOH A 2 402 6 HOH HOH . 
I 3 HOH A 3 403 7 HOH HOH . 
I 3 HOH A 4 404 8 HOH HOH . 
I 3 HOH A 5 405 11 HOH HOH . 
I 3 HOH A 6 406 17 HOH HOH . 
I 3 HOH A 7 407 18 HOH HOH . 
I 3 HOH A 8 408 19 HOH HOH . 
I 3 HOH A 9 409 22 HOH HOH . 
I 3 HOH A 10 410 23 HOH HOH . 
I 3 HOH A 11 411 24 HOH HOH . 
I 3 HOH A 12 412 26 HOH HOH . 
I 3 HOH A 13 413 27 HOH HOH . 
I 3 HOH A 14 414 28 HOH HOH . 
I 3 HOH A 15 415 30 HOH HOH . 
I 3 HOH A 16 416 37 HOH HOH . 
I 3 HOH A 17 417 39 HOH HOH . 
I 3 HOH A 18 418 41 HOH HOH . 
I 3 HOH A 19 419 44 HOH HOH . 
I 3 HOH A 20 420 49 HOH HOH . 
I 3 HOH A 21 421 50 HOH HOH . 
I 3 HOH A 22 422 52 HOH HOH . 
I 3 HOH A 23 423 62 HOH HOH . 
I 3 HOH A 24 424 65 HOH HOH . 
I 3 HOH A 25 425 67 HOH HOH . 
I 3 HOH A 26 426 74 HOH HOH . 
I 3 HOH A 27 427 80 HOH HOH . 
I 3 HOH A 28 428 81 HOH HOH . 
I 3 HOH A 29 429 82 HOH HOH . 
I 3 HOH A 30 430 92 HOH HOH . 
I 3 HOH A 31 431 93 HOH HOH . 
I 3 HOH A 32 432 95 HOH HOH . 
I 3 HOH A 33 433 96 HOH HOH . 
I 3 HOH A 34 434 97 HOH HOH . 
I 3 HOH A 35 435 98 HOH HOH . 
I 3 HOH A 36 436 100 HOH HOH . 
I 3 HOH A 37 437 101 HOH HOH . 
I 3 HOH A 38 438 102 HOH HOH . 
I 3 HOH A 39 439 104 HOH HOH . 
I 3 HOH A 40 440 105 HOH HOH . 
I 3 HOH A 41 441 106 HOH HOH . 
I 3 HOH A 42 442 107 HOH HOH . 
I 3 HOH A 43 443 145 HOH HOH . 
I 3 HOH A 44 444 146 HOH HOH . 
I 3 HOH A 45 445 148 HOH HOH . 
I 3 HOH A 46 446 149 HOH HOH . 
I 3 HOH A 47 447 150 HOH HOH . 
I 3 HOH A 48 448 151 HOH HOH . 
I 3 HOH A 49 449 152 HOH HOH . 
I 3 HOH A 50 450 154 HOH HOH . 
I 3 HOH A 51 451 155 HOH HOH . 
I 3 HOH A 52 452 156 HOH HOH . 
I 3 HOH A 53 453 165 HOH HOH . 
I 3 HOH A 54 454 166 HOH HOH . 
J 3 HOH B 1 401 9 HOH HOH . 
J 3 HOH B 2 402 10 HOH HOH . 
J 3 HOH B 3 403 13 HOH HOH . 
J 3 HOH B 4 404 14 HOH HOH . 
J 3 HOH B 5 405 15 HOH HOH . 
J 3 HOH B 6 406 16 HOH HOH . 
J 3 HOH B 7 407 21 HOH HOH . 
J 3 HOH B 8 408 25 HOH HOH . 
J 3 HOH B 9 409 29 HOH HOH . 
J 3 HOH B 10 410 32 HOH HOH . 
J 3 HOH B 11 411 34 HOH HOH . 
J 3 HOH B 12 412 36 HOH HOH . 
J 3 HOH B 13 413 38 HOH HOH . 
J 3 HOH B 14 414 43 HOH HOH . 
J 3 HOH B 15 415 45 HOH HOH . 
J 3 HOH B 16 416 46 HOH HOH . 
J 3 HOH B 17 417 48 HOH HOH . 
J 3 HOH B 18 418 56 HOH HOH . 
J 3 HOH B 19 419 57 HOH HOH . 
J 3 HOH B 20 420 58 HOH HOH . 
J 3 HOH B 21 421 63 HOH HOH . 
J 3 HOH B 22 422 66 HOH HOH . 
J 3 HOH B 23 423 70 HOH HOH . 
J 3 HOH B 24 424 72 HOH HOH . 
J 3 HOH B 25 425 73 HOH HOH . 
J 3 HOH B 26 426 76 HOH HOH . 
J 3 HOH B 27 427 83 HOH HOH . 
J 3 HOH B 28 428 84 HOH HOH . 
J 3 HOH B 29 429 85 HOH HOH . 
J 3 HOH B 30 430 86 HOH HOH . 
J 3 HOH B 31 431 87 HOH HOH . 
J 3 HOH B 32 432 88 HOH HOH . 
J 3 HOH B 33 433 99 HOH HOH . 
J 3 HOH B 34 434 108 HOH HOH . 
J 3 HOH B 35 435 109 HOH HOH . 
J 3 HOH B 36 436 110 HOH HOH . 
J 3 HOH B 37 437 111 HOH HOH . 
J 3 HOH B 38 438 112 HOH HOH . 
J 3 HOH B 39 439 113 HOH HOH . 
J 3 HOH B 40 440 114 HOH HOH . 
J 3 HOH B 41 441 115 HOH HOH . 
J 3 HOH B 42 442 118 HOH HOH . 
J 3 HOH B 43 443 120 HOH HOH . 
J 3 HOH B 44 444 121 HOH HOH . 
J 3 HOH B 45 445 144 HOH HOH . 
J 3 HOH B 46 446 153 HOH HOH . 
J 3 HOH B 47 447 157 HOH HOH . 
J 3 HOH B 48 448 158 HOH HOH . 
J 3 HOH B 49 449 159 HOH HOH . 
J 3 HOH B 50 450 160 HOH HOH . 
J 3 HOH B 51 451 162 HOH HOH . 
J 3 HOH B 52 452 163 HOH HOH . 
J 3 HOH B 53 453 168 HOH HOH . 
K 3 HOH C 1 401 12 HOH HOH . 
K 3 HOH C 2 402 20 HOH HOH . 
K 3 HOH C 3 403 31 HOH HOH . 
K 3 HOH C 4 404 35 HOH HOH . 
K 3 HOH C 5 405 40 HOH HOH . 
K 3 HOH C 6 406 47 HOH HOH . 
K 3 HOH C 7 407 53 HOH HOH . 
K 3 HOH C 8 408 54 HOH HOH . 
K 3 HOH C 9 409 55 HOH HOH . 
K 3 HOH C 10 410 59 HOH HOH . 
K 3 HOH C 11 411 60 HOH HOH . 
K 3 HOH C 12 412 69 HOH HOH . 
K 3 HOH C 13 413 71 HOH HOH . 
K 3 HOH C 14 414 77 HOH HOH . 
K 3 HOH C 15 415 78 HOH HOH . 
K 3 HOH C 16 416 79 HOH HOH . 
K 3 HOH C 17 417 89 HOH HOH . 
K 3 HOH C 18 418 90 HOH HOH . 
K 3 HOH C 19 419 91 HOH HOH . 
K 3 HOH C 20 420 94 HOH HOH . 
K 3 HOH C 21 421 103 HOH HOH . 
K 3 HOH C 22 422 122 HOH HOH . 
K 3 HOH C 23 423 123 HOH HOH . 
K 3 HOH C 24 424 124 HOH HOH . 
K 3 HOH C 25 425 125 HOH HOH . 
K 3 HOH C 26 426 126 HOH HOH . 
K 3 HOH C 27 427 127 HOH HOH . 
K 3 HOH C 28 428 128 HOH HOH . 
K 3 HOH C 29 429 129 HOH HOH . 
K 3 HOH C 30 430 130 HOH HOH . 
K 3 HOH C 31 431 131 HOH HOH . 
K 3 HOH C 32 432 132 HOH HOH . 
K 3 HOH C 33 433 133 HOH HOH . 
K 3 HOH C 34 434 134 HOH HOH . 
K 3 HOH C 35 435 135 HOH HOH . 
K 3 HOH C 36 436 136 HOH HOH . 
K 3 HOH C 37 437 137 HOH HOH . 
K 3 HOH C 38 438 138 HOH HOH . 
K 3 HOH C 39 439 147 HOH HOH . 
K 3 HOH C 40 440 164 HOH HOH . 
K 3 HOH C 41 441 167 HOH HOH . 
L 3 HOH D 1 401 33 HOH HOH . 
L 3 HOH D 2 402 42 HOH HOH . 
L 3 HOH D 3 403 51 HOH HOH . 
L 3 HOH D 4 404 61 HOH HOH . 
L 3 HOH D 5 405 64 HOH HOH . 
L 3 HOH D 6 406 68 HOH HOH . 
L 3 HOH D 7 407 75 HOH HOH . 
L 3 HOH D 8 408 116 HOH HOH . 
L 3 HOH D 9 409 117 HOH HOH . 
L 3 HOH D 10 410 119 HOH HOH . 
L 3 HOH D 11 411 139 HOH HOH . 
L 3 HOH D 12 412 140 HOH HOH . 
L 3 HOH D 13 413 141 HOH HOH . 
L 3 HOH D 14 414 142 HOH HOH . 
L 3 HOH D 15 415 143 HOH HOH . 
L 3 HOH D 16 416 161 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               48.299 
_atom_site.Cartn_y               45.323 
_atom_site.Cartn_z               -12.077 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#