data_4ODW # _model_server_result.job_id WEed2T4T5ORPUFyGnXzkZw _model_server_result.datetime_utc '2025-02-05 07:47:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4odw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4ODW # _exptl.entry_id 4ODW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.99 _cell.angle_beta 72.39 _cell.angle_gamma 88.29 _cell.entry_id 4ODW _cell.length_a 42.129 _cell.length_b 69.235 _cell.length_c 69.066 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ODW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G 1 1 C,D,E,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? disulf ? disulf2 A SG CYS 135 L CYS 134 1_555 A SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 B SG CYS 149 H CYS 139 1_555 B SG CYS 204 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf5 C SG CYS 23 B CYS 23 1_555 C SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? disulf ? disulf6 C SG CYS 135 B CYS 134 1_555 C SG CYS 195 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 D SG CYS 22 A CYS 22 1_555 D SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 D SG CYS 149 A CYS 139 1_555 D SG CYS 204 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 4ODW _atom_sites.fract_transf_matrix[1][1] 0.023737 _atom_sites.fract_transf_matrix[1][2] -0.000708 _atom_sites.fract_transf_matrix[1][3] -0.00774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01445 _atom_sites.fract_transf_matrix[2][3] -0.005094 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS A 1 301 1 TRS TRS . F 4 HOH L 1 301 3 HOH HOH . F 4 HOH L 2 302 5 HOH HOH . F 4 HOH L 3 303 6 HOH HOH . F 4 HOH L 4 304 10 HOH HOH . G 4 HOH H 1 301 4 HOH HOH . G 4 HOH H 2 302 7 HOH HOH . G 4 HOH H 3 303 8 HOH HOH . G 4 HOH H 4 304 9 HOH HOH . H 4 HOH B 1 301 1 HOH HOH . H 4 HOH B 2 302 7 HOH HOH . H 4 HOH B 3 303 10 HOH HOH . H 4 HOH B 4 304 11 HOH HOH . H 4 HOH B 5 305 12 HOH HOH . I 4 HOH A 1 401 2 HOH HOH . I 4 HOH A 2 402 8 HOH HOH . I 4 HOH A 3 403 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 3 -37.531 31.968 26.98 1 39.62 ? C TRS 301 A 1 HETATM 2 C C1 TRS . . . E 3 -38.039 31.44 25.635 1 41.43 ? C1 TRS 301 A 1 HETATM 3 C C2 TRS . . . E 3 -38.615 31.874 28.04 1 38.74 ? C2 TRS 301 A 1 HETATM 4 C C3 TRS . . . E 3 -37.033 33.401 26.781 1 39.37 ? C3 TRS 301 A 1 HETATM 5 N N TRS . . . E 3 -36.397 31.126 27.435 1 40.34 ? N TRS 301 A 1 HETATM 6 O O1 TRS . . . E 3 -37.014 31.514 24.621 1 41.7 ? O1 TRS 301 A 1 HETATM 7 O O2 TRS . . . E 3 -39.445 33.043 27.955 1 38.72 ? O2 TRS 301 A 1 HETATM 8 O O3 TRS . . . E 3 -36.972 34.136 28.009 1 38.97 ? O3 TRS 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #