data_4OE4 # _model_server_result.job_id MPeWhexHJxXxLmK3XiQGYw _model_server_result.datetime_utc '2024-11-05 00:35:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oe4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4OE4 # _exptl.entry_id 4OE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OE4 _cell.length_a 108.037 _cell.length_b 108.037 _cell.length_c 181.027 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.0185 93.562787 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -54.0185 93.562787 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4OE4 _atom_sites.fract_transf_matrix[1][1] 0.009256 _atom_sites.fract_transf_matrix[1][2] 0.005344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 1000 1000 NAD NAD . D 2 NAD B 1 1000 1000 NAD NAD . E 3 HOH A 1 1101 1 HOH HOH . E 3 HOH A 2 1102 2 HOH HOH . E 3 HOH A 3 1103 3 HOH HOH . E 3 HOH A 4 1104 5 HOH HOH . E 3 HOH A 5 1105 6 HOH HOH . E 3 HOH A 6 1106 7 HOH HOH . E 3 HOH A 7 1107 8 HOH HOH . E 3 HOH A 8 1108 9 HOH HOH . E 3 HOH A 9 1109 10 HOH HOH . E 3 HOH A 10 1110 13 HOH HOH . E 3 HOH A 11 1111 14 HOH HOH . E 3 HOH A 12 1112 15 HOH HOH . E 3 HOH A 13 1113 17 HOH HOH . E 3 HOH A 14 1114 18 HOH HOH . E 3 HOH A 15 1115 19 HOH HOH . E 3 HOH A 16 1116 20 HOH HOH . E 3 HOH A 17 1117 21 HOH HOH . E 3 HOH A 18 1118 23 HOH HOH . E 3 HOH A 19 1119 25 HOH HOH . E 3 HOH A 20 1120 26 HOH HOH . E 3 HOH A 21 1121 27 HOH HOH . E 3 HOH A 22 1122 28 HOH HOH . E 3 HOH A 23 1123 29 HOH HOH . E 3 HOH A 24 1124 30 HOH HOH . E 3 HOH A 25 1125 31 HOH HOH . E 3 HOH A 26 1126 32 HOH HOH . E 3 HOH A 27 1127 33 HOH HOH . E 3 HOH A 28 1128 34 HOH HOH . E 3 HOH A 29 1129 35 HOH HOH . E 3 HOH A 30 1130 36 HOH HOH . E 3 HOH A 31 1131 37 HOH HOH . E 3 HOH A 32 1132 38 HOH HOH . E 3 HOH A 33 1133 40 HOH HOH . E 3 HOH A 34 1134 41 HOH HOH . E 3 HOH A 35 1135 44 HOH HOH . E 3 HOH A 36 1136 46 HOH HOH . E 3 HOH A 37 1137 47 HOH HOH . E 3 HOH A 38 1138 49 HOH HOH . E 3 HOH A 39 1139 50 HOH HOH . E 3 HOH A 40 1140 54 HOH HOH . E 3 HOH A 41 1141 55 HOH HOH . E 3 HOH A 42 1142 57 HOH HOH . E 3 HOH A 43 1143 60 HOH HOH . E 3 HOH A 44 1144 62 HOH HOH . E 3 HOH A 45 1145 63 HOH HOH . E 3 HOH A 46 1146 64 HOH HOH . E 3 HOH A 47 1147 66 HOH HOH . E 3 HOH A 48 1148 67 HOH HOH . E 3 HOH A 49 1149 69 HOH HOH . E 3 HOH A 50 1150 70 HOH HOH . E 3 HOH A 51 1151 71 HOH HOH . E 3 HOH A 52 1152 72 HOH HOH . E 3 HOH A 53 1153 73 HOH HOH . E 3 HOH A 54 1154 74 HOH HOH . E 3 HOH A 55 1155 75 HOH HOH . E 3 HOH A 56 1156 77 HOH HOH . E 3 HOH A 57 1157 78 HOH HOH . E 3 HOH A 58 1158 79 HOH HOH . E 3 HOH A 59 1159 80 HOH HOH . E 3 HOH A 60 1160 81 HOH HOH . E 3 HOH A 61 1161 84 HOH HOH . E 3 HOH A 62 1162 85 HOH HOH . E 3 HOH A 63 1163 87 HOH HOH . E 3 HOH A 64 1164 88 HOH HOH . E 3 HOH A 65 1165 89 HOH HOH . E 3 HOH A 66 1166 90 HOH HOH . E 3 HOH A 67 1167 91 HOH HOH . E 3 HOH A 68 1168 93 HOH HOH . E 3 HOH A 69 1169 94 HOH HOH . E 3 HOH A 70 1170 96 HOH HOH . E 3 HOH A 71 1171 97 HOH HOH . E 3 HOH A 72 1172 98 HOH HOH . E 3 HOH A 73 1173 100 HOH HOH . E 3 HOH A 74 1174 101 HOH HOH . E 3 HOH A 75 1175 102 HOH HOH . E 3 HOH A 76 1176 103 HOH HOH . E 3 HOH A 77 1177 106 HOH HOH . E 3 HOH A 78 1178 107 HOH HOH . E 3 HOH A 79 1179 112 HOH HOH . E 3 HOH A 80 1180 114 HOH HOH . E 3 HOH A 81 1181 115 HOH HOH . E 3 HOH A 82 1182 116 HOH HOH . E 3 HOH A 83 1183 118 HOH HOH . E 3 HOH A 84 1184 120 HOH HOH . E 3 HOH A 85 1185 121 HOH HOH . E 3 HOH A 86 1186 122 HOH HOH . E 3 HOH A 87 1187 127 HOH HOH . E 3 HOH A 88 1188 129 HOH HOH . E 3 HOH A 89 1189 130 HOH HOH . E 3 HOH A 90 1190 131 HOH HOH . E 3 HOH A 91 1191 132 HOH HOH . E 3 HOH A 92 1192 133 HOH HOH . E 3 HOH A 93 1193 135 HOH HOH . E 3 HOH A 94 1194 137 HOH HOH . E 3 HOH A 95 1195 139 HOH HOH . E 3 HOH A 96 1196 142 HOH HOH . E 3 HOH A 97 1197 143 HOH HOH . E 3 HOH A 98 1198 145 HOH HOH . E 3 HOH A 99 1199 146 HOH HOH . E 3 HOH A 100 1200 148 HOH HOH . E 3 HOH A 101 1201 149 HOH HOH . E 3 HOH A 102 1202 151 HOH HOH . E 3 HOH A 103 1203 156 HOH HOH . E 3 HOH A 104 1204 159 HOH HOH . E 3 HOH A 105 1205 160 HOH HOH . E 3 HOH A 106 1206 161 HOH HOH . E 3 HOH A 107 1207 162 HOH HOH . E 3 HOH A 108 1208 164 HOH HOH . E 3 HOH A 109 1209 165 HOH HOH . E 3 HOH A 110 1210 169 HOH HOH . E 3 HOH A 111 1211 170 HOH HOH . E 3 HOH A 112 1212 171 HOH HOH . E 3 HOH A 113 1213 174 HOH HOH . E 3 HOH A 114 1214 175 HOH HOH . E 3 HOH A 115 1215 176 HOH HOH . E 3 HOH A 116 1216 180 HOH HOH . E 3 HOH A 117 1217 182 HOH HOH . E 3 HOH A 118 1218 184 HOH HOH . E 3 HOH A 119 1219 186 HOH HOH . F 3 HOH B 1 1101 4 HOH HOH . F 3 HOH B 2 1102 12 HOH HOH . F 3 HOH B 3 1103 16 HOH HOH . F 3 HOH B 4 1104 22 HOH HOH . F 3 HOH B 5 1105 24 HOH HOH . F 3 HOH B 6 1106 39 HOH HOH . F 3 HOH B 7 1107 42 HOH HOH . F 3 HOH B 8 1108 43 HOH HOH . F 3 HOH B 9 1109 48 HOH HOH . F 3 HOH B 10 1110 51 HOH HOH . F 3 HOH B 11 1111 52 HOH HOH . F 3 HOH B 12 1112 53 HOH HOH . F 3 HOH B 13 1113 56 HOH HOH . F 3 HOH B 14 1114 58 HOH HOH . F 3 HOH B 15 1115 59 HOH HOH . F 3 HOH B 16 1116 61 HOH HOH . F 3 HOH B 17 1117 65 HOH HOH . F 3 HOH B 18 1118 68 HOH HOH . F 3 HOH B 19 1119 76 HOH HOH . F 3 HOH B 20 1120 82 HOH HOH . F 3 HOH B 21 1121 83 HOH HOH . F 3 HOH B 22 1122 86 HOH HOH . F 3 HOH B 23 1123 92 HOH HOH . F 3 HOH B 24 1124 95 HOH HOH . F 3 HOH B 25 1125 99 HOH HOH . F 3 HOH B 26 1126 104 HOH HOH . F 3 HOH B 27 1127 105 HOH HOH . F 3 HOH B 28 1128 108 HOH HOH . F 3 HOH B 29 1129 109 HOH HOH . F 3 HOH B 30 1130 110 HOH HOH . F 3 HOH B 31 1131 111 HOH HOH . F 3 HOH B 32 1132 113 HOH HOH . F 3 HOH B 33 1133 117 HOH HOH . F 3 HOH B 34 1134 119 HOH HOH . F 3 HOH B 35 1135 123 HOH HOH . F 3 HOH B 36 1136 125 HOH HOH . F 3 HOH B 37 1137 126 HOH HOH . F 3 HOH B 38 1138 136 HOH HOH . F 3 HOH B 39 1139 138 HOH HOH . F 3 HOH B 40 1140 141 HOH HOH . F 3 HOH B 41 1141 144 HOH HOH . F 3 HOH B 42 1142 147 HOH HOH . F 3 HOH B 43 1143 150 HOH HOH . F 3 HOH B 44 1144 152 HOH HOH . F 3 HOH B 45 1145 153 HOH HOH . F 3 HOH B 46 1146 154 HOH HOH . F 3 HOH B 47 1147 155 HOH HOH . F 3 HOH B 48 1148 157 HOH HOH . F 3 HOH B 49 1149 158 HOH HOH . F 3 HOH B 50 1150 166 HOH HOH . F 3 HOH B 51 1151 173 HOH HOH . F 3 HOH B 52 1152 178 HOH HOH . F 3 HOH B 53 1153 179 HOH HOH . F 3 HOH B 54 1154 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 5.613 23.208 91.195 1 33.51 ? PA NAD 1000 A 1 HETATM 2 O O1A NAD . . . C 2 5.1 22.794 92.607 1 33.79 ? O1A NAD 1000 A 1 HETATM 3 O O2A NAD . . . C 2 5.662 22.184 90.157 1 38.04 ? O2A NAD 1000 A 1 HETATM 4 O O5B NAD . . . C 2 7.016 23.712 91.055 1 32.09 ? O5B NAD 1000 A 1 HETATM 5 C C5B NAD . . . C 2 7.461 24.843 91.785 1 23.06 ? C5B NAD 1000 A 1 HETATM 6 C C4B NAD . . . C 2 8.886 24.724 92.287 1 23.32 ? C4B NAD 1000 A 1 HETATM 7 O O4B NAD . . . C 2 9.056 23.6 93.131 1 25.5 ? O4B NAD 1000 A 1 HETATM 8 C C3B NAD . . . C 2 9.937 24.664 91.212 1 23.13 ? C3B NAD 1000 A 1 HETATM 9 O O3B NAD . . . C 2 11.068 25.371 91.622 1 20.39 ? O3B NAD 1000 A 1 HETATM 10 C C2B NAD . . . C 2 10.14 23.192 91.131 1 24.44 ? C2B NAD 1000 A 1 HETATM 11 O O2B NAD . . . C 2 11.286 22.761 90.51 1 25.96 ? O2B NAD 1000 A 1 HETATM 12 C C1B NAD . . . C 2 10.087 22.816 92.562 1 23.58 ? C1B NAD 1000 A 1 HETATM 13 N N9A NAD . . . C 2 9.766 21.413 92.767 1 29.73 ? N9A NAD 1000 A 1 HETATM 14 C C8A NAD . . . C 2 9.009 20.595 91.944 1 28.51 ? C8A NAD 1000 A 1 HETATM 15 N N7A NAD . . . C 2 8.911 19.371 92.495 1 30.21 ? N7A NAD 1000 A 1 HETATM 16 C C5A NAD . . . C 2 9.593 19.344 93.694 1 27.88 ? C5A NAD 1000 A 1 HETATM 17 C C6A NAD . . . C 2 9.812 18.387 94.658 1 32.11 ? C6A NAD 1000 A 1 HETATM 18 N N6A NAD . . . C 2 9.269 17.07 94.501 1 35.32 ? N6A NAD 1000 A 1 HETATM 19 N N1A NAD . . . C 2 10.534 18.682 95.74 1 29.43 ? N1A NAD 1000 A 1 HETATM 20 C C2A NAD . . . C 2 11.058 19.914 95.922 1 28.37 ? C2A NAD 1000 A 1 HETATM 21 N N3A NAD . . . C 2 10.858 20.886 94.997 1 24.86 ? N3A NAD 1000 A 1 HETATM 22 C C4A NAD . . . C 2 10.148 20.64 93.891 1 24.75 ? C4A NAD 1000 A 1 HETATM 23 O O3 NAD . . . C 2 4.74 24.19 90.502 1 33.68 ? O3 NAD 1000 A 1 HETATM 24 P PN NAD . . . C 2 4.933 25.027 89.164 1 44.49 ? PN NAD 1000 A 1 HETATM 25 O O1N NAD . . . C 2 4.305 24.291 88.023 1 53.63 ? O1N NAD 1000 A 1 HETATM 26 O O2N NAD . . . C 2 6.368 25.372 88.844 1 45.85 ? O2N NAD 1000 A 1 HETATM 27 O O5D NAD . . . C 2 4.134 26.343 89.447 1 51.85 ? O5D NAD 1000 A 1 HETATM 28 C C5D NAD . . . C 2 2.749 26.31 89.353 1 62.55 ? C5D NAD 1000 A 1 HETATM 29 C C4D NAD . . . C 2 2.071 26.447 90.698 1 65.42 ? C4D NAD 1000 A 1 HETATM 30 O O4D NAD . . . C 2 1.968 27.783 91.133 1 69.87 ? O4D NAD 1000 A 1 HETATM 31 C C3D NAD . . . C 2 0.691 25.909 90.602 1 64.24 ? C3D NAD 1000 A 1 HETATM 32 O O3D NAD . . . C 2 0.584 24.604 91.025 1 64.4 ? O3D NAD 1000 A 1 HETATM 33 C C2D NAD . . . C 2 -0.129 26.833 91.41 1 64.47 ? C2D NAD 1000 A 1 HETATM 34 O O2D NAD . . . C 2 -0.823 26.126 92.366 1 64.26 ? O2D NAD 1000 A 1 HETATM 35 C C1D NAD . . . C 2 0.833 27.846 91.958 1 63.86 ? C1D NAD 1000 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #