data_4OE4
#
_model_server_result.job_id            m3GZXIprbiyK1Ii8gw5cLg 
_model_server_result.datetime_utc      '2024-11-05 00:36:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oe4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    4OE4 
#
_exptl.entry_id    4OE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4OE4 
_cell.length_a            108.037 
_cell.length_b            108.037 
_cell.length_c            181.027 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.0185 93.562787 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -54.0185 93.562787 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     4OE4 
_atom_sites.fract_transf_matrix[1][1]    0.009256 
_atom_sites.fract_transf_matrix[1][2]    0.005344 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 1000 1000 NAD NAD . 
D 2 NAD B 1 1000 1000 NAD NAD . 
E 3 HOH A 1 1101 1 HOH HOH . 
E 3 HOH A 2 1102 2 HOH HOH . 
E 3 HOH A 3 1103 3 HOH HOH . 
E 3 HOH A 4 1104 5 HOH HOH . 
E 3 HOH A 5 1105 6 HOH HOH . 
E 3 HOH A 6 1106 7 HOH HOH . 
E 3 HOH A 7 1107 8 HOH HOH . 
E 3 HOH A 8 1108 9 HOH HOH . 
E 3 HOH A 9 1109 10 HOH HOH . 
E 3 HOH A 10 1110 13 HOH HOH . 
E 3 HOH A 11 1111 14 HOH HOH . 
E 3 HOH A 12 1112 15 HOH HOH . 
E 3 HOH A 13 1113 17 HOH HOH . 
E 3 HOH A 14 1114 18 HOH HOH . 
E 3 HOH A 15 1115 19 HOH HOH . 
E 3 HOH A 16 1116 20 HOH HOH . 
E 3 HOH A 17 1117 21 HOH HOH . 
E 3 HOH A 18 1118 23 HOH HOH . 
E 3 HOH A 19 1119 25 HOH HOH . 
E 3 HOH A 20 1120 26 HOH HOH . 
E 3 HOH A 21 1121 27 HOH HOH . 
E 3 HOH A 22 1122 28 HOH HOH . 
E 3 HOH A 23 1123 29 HOH HOH . 
E 3 HOH A 24 1124 30 HOH HOH . 
E 3 HOH A 25 1125 31 HOH HOH . 
E 3 HOH A 26 1126 32 HOH HOH . 
E 3 HOH A 27 1127 33 HOH HOH . 
E 3 HOH A 28 1128 34 HOH HOH . 
E 3 HOH A 29 1129 35 HOH HOH . 
E 3 HOH A 30 1130 36 HOH HOH . 
E 3 HOH A 31 1131 37 HOH HOH . 
E 3 HOH A 32 1132 38 HOH HOH . 
E 3 HOH A 33 1133 40 HOH HOH . 
E 3 HOH A 34 1134 41 HOH HOH . 
E 3 HOH A 35 1135 44 HOH HOH . 
E 3 HOH A 36 1136 46 HOH HOH . 
E 3 HOH A 37 1137 47 HOH HOH . 
E 3 HOH A 38 1138 49 HOH HOH . 
E 3 HOH A 39 1139 50 HOH HOH . 
E 3 HOH A 40 1140 54 HOH HOH . 
E 3 HOH A 41 1141 55 HOH HOH . 
E 3 HOH A 42 1142 57 HOH HOH . 
E 3 HOH A 43 1143 60 HOH HOH . 
E 3 HOH A 44 1144 62 HOH HOH . 
E 3 HOH A 45 1145 63 HOH HOH . 
E 3 HOH A 46 1146 64 HOH HOH . 
E 3 HOH A 47 1147 66 HOH HOH . 
E 3 HOH A 48 1148 67 HOH HOH . 
E 3 HOH A 49 1149 69 HOH HOH . 
E 3 HOH A 50 1150 70 HOH HOH . 
E 3 HOH A 51 1151 71 HOH HOH . 
E 3 HOH A 52 1152 72 HOH HOH . 
E 3 HOH A 53 1153 73 HOH HOH . 
E 3 HOH A 54 1154 74 HOH HOH . 
E 3 HOH A 55 1155 75 HOH HOH . 
E 3 HOH A 56 1156 77 HOH HOH . 
E 3 HOH A 57 1157 78 HOH HOH . 
E 3 HOH A 58 1158 79 HOH HOH . 
E 3 HOH A 59 1159 80 HOH HOH . 
E 3 HOH A 60 1160 81 HOH HOH . 
E 3 HOH A 61 1161 84 HOH HOH . 
E 3 HOH A 62 1162 85 HOH HOH . 
E 3 HOH A 63 1163 87 HOH HOH . 
E 3 HOH A 64 1164 88 HOH HOH . 
E 3 HOH A 65 1165 89 HOH HOH . 
E 3 HOH A 66 1166 90 HOH HOH . 
E 3 HOH A 67 1167 91 HOH HOH . 
E 3 HOH A 68 1168 93 HOH HOH . 
E 3 HOH A 69 1169 94 HOH HOH . 
E 3 HOH A 70 1170 96 HOH HOH . 
E 3 HOH A 71 1171 97 HOH HOH . 
E 3 HOH A 72 1172 98 HOH HOH . 
E 3 HOH A 73 1173 100 HOH HOH . 
E 3 HOH A 74 1174 101 HOH HOH . 
E 3 HOH A 75 1175 102 HOH HOH . 
E 3 HOH A 76 1176 103 HOH HOH . 
E 3 HOH A 77 1177 106 HOH HOH . 
E 3 HOH A 78 1178 107 HOH HOH . 
E 3 HOH A 79 1179 112 HOH HOH . 
E 3 HOH A 80 1180 114 HOH HOH . 
E 3 HOH A 81 1181 115 HOH HOH . 
E 3 HOH A 82 1182 116 HOH HOH . 
E 3 HOH A 83 1183 118 HOH HOH . 
E 3 HOH A 84 1184 120 HOH HOH . 
E 3 HOH A 85 1185 121 HOH HOH . 
E 3 HOH A 86 1186 122 HOH HOH . 
E 3 HOH A 87 1187 127 HOH HOH . 
E 3 HOH A 88 1188 129 HOH HOH . 
E 3 HOH A 89 1189 130 HOH HOH . 
E 3 HOH A 90 1190 131 HOH HOH . 
E 3 HOH A 91 1191 132 HOH HOH . 
E 3 HOH A 92 1192 133 HOH HOH . 
E 3 HOH A 93 1193 135 HOH HOH . 
E 3 HOH A 94 1194 137 HOH HOH . 
E 3 HOH A 95 1195 139 HOH HOH . 
E 3 HOH A 96 1196 142 HOH HOH . 
E 3 HOH A 97 1197 143 HOH HOH . 
E 3 HOH A 98 1198 145 HOH HOH . 
E 3 HOH A 99 1199 146 HOH HOH . 
E 3 HOH A 100 1200 148 HOH HOH . 
E 3 HOH A 101 1201 149 HOH HOH . 
E 3 HOH A 102 1202 151 HOH HOH . 
E 3 HOH A 103 1203 156 HOH HOH . 
E 3 HOH A 104 1204 159 HOH HOH . 
E 3 HOH A 105 1205 160 HOH HOH . 
E 3 HOH A 106 1206 161 HOH HOH . 
E 3 HOH A 107 1207 162 HOH HOH . 
E 3 HOH A 108 1208 164 HOH HOH . 
E 3 HOH A 109 1209 165 HOH HOH . 
E 3 HOH A 110 1210 169 HOH HOH . 
E 3 HOH A 111 1211 170 HOH HOH . 
E 3 HOH A 112 1212 171 HOH HOH . 
E 3 HOH A 113 1213 174 HOH HOH . 
E 3 HOH A 114 1214 175 HOH HOH . 
E 3 HOH A 115 1215 176 HOH HOH . 
E 3 HOH A 116 1216 180 HOH HOH . 
E 3 HOH A 117 1217 182 HOH HOH . 
E 3 HOH A 118 1218 184 HOH HOH . 
E 3 HOH A 119 1219 186 HOH HOH . 
F 3 HOH B 1 1101 4 HOH HOH . 
F 3 HOH B 2 1102 12 HOH HOH . 
F 3 HOH B 3 1103 16 HOH HOH . 
F 3 HOH B 4 1104 22 HOH HOH . 
F 3 HOH B 5 1105 24 HOH HOH . 
F 3 HOH B 6 1106 39 HOH HOH . 
F 3 HOH B 7 1107 42 HOH HOH . 
F 3 HOH B 8 1108 43 HOH HOH . 
F 3 HOH B 9 1109 48 HOH HOH . 
F 3 HOH B 10 1110 51 HOH HOH . 
F 3 HOH B 11 1111 52 HOH HOH . 
F 3 HOH B 12 1112 53 HOH HOH . 
F 3 HOH B 13 1113 56 HOH HOH . 
F 3 HOH B 14 1114 58 HOH HOH . 
F 3 HOH B 15 1115 59 HOH HOH . 
F 3 HOH B 16 1116 61 HOH HOH . 
F 3 HOH B 17 1117 65 HOH HOH . 
F 3 HOH B 18 1118 68 HOH HOH . 
F 3 HOH B 19 1119 76 HOH HOH . 
F 3 HOH B 20 1120 82 HOH HOH . 
F 3 HOH B 21 1121 83 HOH HOH . 
F 3 HOH B 22 1122 86 HOH HOH . 
F 3 HOH B 23 1123 92 HOH HOH . 
F 3 HOH B 24 1124 95 HOH HOH . 
F 3 HOH B 25 1125 99 HOH HOH . 
F 3 HOH B 26 1126 104 HOH HOH . 
F 3 HOH B 27 1127 105 HOH HOH . 
F 3 HOH B 28 1128 108 HOH HOH . 
F 3 HOH B 29 1129 109 HOH HOH . 
F 3 HOH B 30 1130 110 HOH HOH . 
F 3 HOH B 31 1131 111 HOH HOH . 
F 3 HOH B 32 1132 113 HOH HOH . 
F 3 HOH B 33 1133 117 HOH HOH . 
F 3 HOH B 34 1134 119 HOH HOH . 
F 3 HOH B 35 1135 123 HOH HOH . 
F 3 HOH B 36 1136 125 HOH HOH . 
F 3 HOH B 37 1137 126 HOH HOH . 
F 3 HOH B 38 1138 136 HOH HOH . 
F 3 HOH B 39 1139 138 HOH HOH . 
F 3 HOH B 40 1140 141 HOH HOH . 
F 3 HOH B 41 1141 144 HOH HOH . 
F 3 HOH B 42 1142 147 HOH HOH . 
F 3 HOH B 43 1143 150 HOH HOH . 
F 3 HOH B 44 1144 152 HOH HOH . 
F 3 HOH B 45 1145 153 HOH HOH . 
F 3 HOH B 46 1146 154 HOH HOH . 
F 3 HOH B 47 1147 155 HOH HOH . 
F 3 HOH B 48 1148 157 HOH HOH . 
F 3 HOH B 49 1149 158 HOH HOH . 
F 3 HOH B 50 1150 166 HOH HOH . 
F 3 HOH B 51 1151 173 HOH HOH . 
F 3 HOH B 52 1152 178 HOH HOH . 
F 3 HOH B 53 1153 179 HOH HOH . 
F 3 HOH B 54 1154 185 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 5.531 23.114 131.39 1 55.44 ? PA NAD 1000 B 1 
HETATM 2 O O1A NAD . . . D 2 6.095 22.733 129.988 1 50.84 ? O1A NAD 1000 B 1 
HETATM 3 O O2A NAD . . . D 2 5.777 22.244 132.53 1 55.86 ? O2A NAD 1000 B 1 
HETATM 4 O O5B NAD . . . D 2 4.061 23.258 131.547 1 46.32 ? O5B NAD 1000 B 1 
HETATM 5 C C5B NAD . . . D 2 3.386 24.171 130.713 1 41.37 ? C5B NAD 1000 B 1 
HETATM 6 C C4B NAD . . . D 2 2.009 23.674 130.32 1 39.76 ? C4B NAD 1000 B 1 
HETATM 7 O O4B NAD . . . D 2 2.081 22.563 129.453 1 41.62 ? O4B NAD 1000 B 1 
HETATM 8 C C3B NAD . . . D 2 1.175 23.308 131.502 1 42.87 ? C3B NAD 1000 B 1 
HETATM 9 O O3B NAD . . . D 2 -0.094 23.811 131.362 1 45.86 ? O3B NAD 1000 B 1 
HETATM 10 C C2B NAD . . . D 2 1.222 21.829 131.493 1 44.19 ? C2B NAD 1000 B 1 
HETATM 11 O O2B NAD . . . D 2 0.15 21.188 132.091 1 40.27 ? O2B NAD 1000 B 1 
HETATM 12 C C1B NAD . . . D 2 1.317 21.544 130.05 1 41.04 ? C1B NAD 1000 B 1 
HETATM 13 N N9A NAD . . . D 2 2.023 20.316 129.848 1 35.87 ? N9A NAD 1000 B 1 
HETATM 14 C C8A NAD . . . D 2 2.995 19.779 130.672 1 33.8 ? C8A NAD 1000 B 1 
HETATM 15 N N7A NAD . . . D 2 3.44 18.646 130.12 1 37.17 ? N7A NAD 1000 B 1 
HETATM 16 C C5A NAD . . . D 2 2.785 18.419 128.92 1 37.63 ? C5A NAD 1000 B 1 
HETATM 17 C C6A NAD . . . D 2 2.838 17.434 127.955 1 42.14 ? C6A NAD 1000 B 1 
HETATM 18 N N6A NAD . . . D 2 3.739 16.33 128.1 1 41.63 ? N6A NAD 1000 B 1 
HETATM 19 N N1A NAD . . . D 2 2.046 17.511 126.882 1 43.99 ? N1A NAD 1000 B 1 
HETATM 20 C C2A NAD . . . D 2 1.177 18.541 126.702 1 41.14 ? C2A NAD 1000 B 1 
HETATM 21 N N3A NAD . . . D 2 1.09 19.525 127.629 1 38.46 ? N3A NAD 1000 B 1 
HETATM 22 C C4A NAD . . . D 2 1.87 19.486 128.725 1 35.99 ? C4A NAD 1000 B 1 
HETATM 23 O O3 NAD . . . D 2 6.061 24.377 131.945 1 47.01 ? O3 NAD 1000 B 1 
HETATM 24 P PN NAD . . . D 2 5.717 25.033 133.345 1 52.55 ? PN NAD 1000 B 1 
HETATM 25 O O1N NAD . . . D 2 6.386 24.249 134.435 1 65.68 ? O1N NAD 1000 B 1 
HETATM 26 O O2N NAD . . . D 2 4.244 25.113 133.619 1 45.44 ? O2N NAD 1000 B 1 
HETATM 27 O O5D NAD . . . D 2 6.382 26.463 133.283 1 62.38 ? O5D NAD 1000 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#