data_4OEW # _model_server_result.job_id c-9VeniItWthj4OLr_JNJQ _model_server_result.datetime_utc '2025-07-03 17:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 4OEW # _exptl.entry_id 4OEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.422 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-iodo-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OEW _cell.length_a 74.12 _cell.length_b 74.12 _cell.length_c 131.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 104 A HIS 617 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A NE2 HIS 140 A HIS 653 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A OD2 ASP 141 A ASP 654 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 A OD1 ASP 141 A ASP 654 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc5 A OD1 ASP 251 A ASP 764 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc6 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc7 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc8 C MG MG . A MG 902 1_555 E O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 C MG MG . A MG 902 1_555 E O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 C MG MG . A MG 902 1_555 E O HOH . A HOH 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc11 C MG MG . A MG 902 1_555 E O HOH . A HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 C MG MG . A MG 902 1_555 E O HOH . A HOH 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C20 H27 I N4 O4 S' _chem_comp.formula_weight 546.422 _chem_comp.id 5IO _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-iodo-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAK 5IO sing 1 n n CAB CAL 5IO sing 2 n n CAC NBB 5IO sing 3 n n OAD CBA 5IO doub 4 n n OAE SBD 5IO doub 5 n n OAF SBD 5IO doub 6 n n IAG CAX 5IO sing 7 n n CAH CAI 5IO doub 8 n y CAH CAU 5IO sing 9 n y CAI CAV 5IO sing 10 n y CAJ CAU 5IO doub 11 n y CAJ CAY 5IO sing 12 n y CAK CAM 5IO sing 13 n n CAL CAW 5IO sing 14 n n CAM OAT 5IO sing 15 n n CAN CAP 5IO sing 16 n n CAN NBB 5IO sing 17 n n CAO CAQ 5IO sing 18 n n CAO NBB 5IO sing 19 n n CAP NBC 5IO sing 20 n n CAQ NBC 5IO sing 21 n n NAR CAW 5IO sing 22 n n NAR CAZ 5IO doub 23 n n NAS CAZ 5IO sing 24 n n NAS CBA 5IO sing 25 n n OAT CAV 5IO sing 26 n n CAU SBD 5IO sing 27 n n CAV CAY 5IO doub 28 n y CAW CAX 5IO doub 29 n n CAX CBA 5IO sing 30 n n CAY CAZ 5IO sing 31 n n NBC SBD 5IO sing 32 n n CAA HAA 5IO sing 33 n n CAA HAAA 5IO sing 34 n n CAA HAAB 5IO sing 35 n n CAB HAB 5IO sing 36 n n CAB HABA 5IO sing 37 n n CAB HABB 5IO sing 38 n n CAC HAC 5IO sing 39 n n CAC HACA 5IO sing 40 n n CAC HACB 5IO sing 41 n n CAH HAH 5IO sing 42 n n CAI HAI 5IO sing 43 n n CAJ HAJ 5IO sing 44 n n CAK HAK 5IO sing 45 n n CAK HAKA 5IO sing 46 n n CAL HAL 5IO sing 47 n n CAL HALA 5IO sing 48 n n CAM HAM 5IO sing 49 n n CAM HAMA 5IO sing 50 n n CAN HAN 5IO sing 51 n n CAN HANA 5IO sing 52 n n CAO HAO 5IO sing 53 n n CAO HAOA 5IO sing 54 n n CAP HAP 5IO sing 55 n n CAP HAPA 5IO sing 56 n n CAQ HAQ 5IO sing 57 n n CAQ HAQA 5IO sing 58 n n NAS HNAS 5IO sing 59 n n # _atom_sites.entry_id 4OEW _atom_sites.fract_transf_matrix[1][1] 0.013492 _atom_sites.fract_transf_matrix[1][2] 0.007789 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 904 ZN ZN . C 3 MG A 1 902 905 MG MG . D 4 5IO A 1 903 1 5IO DRG . E 5 HOH A 1 1001 1001 HOH HOH . E 5 HOH A 2 1002 1002 HOH HOH . E 5 HOH A 3 1003 1003 HOH HOH . E 5 HOH A 4 1004 1004 HOH HOH . E 5 HOH A 5 1005 1005 HOH HOH . E 5 HOH A 6 1006 1008 HOH HOH . E 5 HOH A 7 1007 1009 HOH HOH . E 5 HOH A 8 1008 1010 HOH HOH . E 5 HOH A 9 1009 1013 HOH HOH . E 5 HOH A 10 1010 1020 HOH HOH . E 5 HOH A 11 1011 1021 HOH HOH . E 5 HOH A 12 1012 1023 HOH HOH . E 5 HOH A 13 1013 1024 HOH HOH . E 5 HOH A 14 1014 1025 HOH HOH . E 5 HOH A 15 1015 1027 HOH HOH . E 5 HOH A 16 1016 1029 HOH HOH . E 5 HOH A 17 1017 1030 HOH HOH . E 5 HOH A 18 1018 1031 HOH HOH . E 5 HOH A 19 1019 1036 HOH HOH . E 5 HOH A 20 1020 1044 HOH HOH . E 5 HOH A 21 1021 1047 HOH HOH . E 5 HOH A 22 1022 1061 HOH HOH . E 5 HOH A 23 1023 1067 HOH HOH . E 5 HOH A 24 1024 1076 HOH HOH . E 5 HOH A 25 1025 1085 HOH HOH . E 5 HOH A 26 1026 1086 HOH HOH . E 5 HOH A 27 1027 1090 HOH HOH . E 5 HOH A 28 1028 1093 HOH HOH . E 5 HOH A 29 1029 1099 HOH HOH . E 5 HOH A 30 1030 1100 HOH HOH . E 5 HOH A 31 1031 1105 HOH HOH . E 5 HOH A 32 1032 1107 HOH HOH . E 5 HOH A 33 1033 1108 HOH HOH . E 5 HOH A 34 1034 1111 HOH HOH . E 5 HOH A 35 1035 1115 HOH HOH . E 5 HOH A 36 1036 1122 HOH HOH . E 5 HOH A 37 1037 1123 HOH HOH . E 5 HOH A 38 1038 1125 HOH HOH . E 5 HOH A 39 1039 1126 HOH HOH . E 5 HOH A 40 1040 1129 HOH HOH . E 5 HOH A 41 1041 1143 HOH HOH . E 5 HOH A 42 1042 1144 HOH HOH . E 5 HOH A 43 1043 1148 HOH HOH . E 5 HOH A 44 1044 1151 HOH HOH . E 5 HOH A 45 1045 1153 HOH HOH . E 5 HOH A 46 1046 1156 HOH HOH . E 5 HOH A 47 1047 1157 HOH HOH . E 5 HOH A 48 1048 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 5IO . . . D 4 -25.218 18.887 -19.284 1 22.07 ? CAA 5IO 903 A 1 HETATM 2 C CAB 5IO . . . D 4 -29.835 13.576 -15.094 1 26.81 ? CAB 5IO 903 A 1 HETATM 3 C CAC 5IO . . . D 4 -29.472 9.68 -19.734 1 56.72 ? CAC 5IO 903 A 1 HETATM 4 O OAD 5IO . . . D 4 -28.93 19.168 -16.634 1 27.59 ? OAD 5IO 903 A 1 HETATM 5 O OAE 5IO . . . D 4 -31.024 13.531 -24.091 1 34.47 ? OAE 5IO 903 A 1 HETATM 6 O OAF 5IO . . . D 4 -32.638 14.354 -22.465 1 31.76 ? OAF 5IO 903 A 1 HETATM 7 I IAG 5IO . . . D 4 -30.549 17.617 -14.015 1 43.07 ? IAG 5IO 903 A 1 HETATM 8 C CAH 5IO . . . D 4 -28.732 14.866 -22.648 1 33.84 ? CAH 5IO 903 A 1 HETATM 9 C CAI 5IO . . . D 4 -27.658 15.562 -22.05 1 35.96 ? CAI 5IO 903 A 1 HETATM 10 C CAJ 5IO . . . D 4 -29.972 14.978 -20.621 1 31.71 ? CAJ 5IO 903 A 1 HETATM 11 C CAK 5IO . . . D 4 -24.555 17.912 -20.211 1 30.9 ? CAK 5IO 903 A 1 HETATM 12 C CAL 5IO . . . D 4 -30.82 14.61 -15.637 1 27.52 ? CAL 5IO 903 A 1 HETATM 13 C CAM 5IO . . . D 4 -25.503 16.987 -20.928 1 32.61 ? CAM 5IO 903 A 1 HETATM 14 C CAN 5IO . . . D 4 -29.944 10.003 -22.151 1 50.7 ? CAN 5IO 903 A 1 HETATM 15 C CAO 5IO . . . D 4 -31.503 10.115 -20.525 1 51.27 ? CAO 5IO 903 A 1 HETATM 16 C CAP 5IO . . . D 4 -30.08 11.525 -22.367 1 43.05 ? CAP 5IO 903 A 1 HETATM 17 C CAQ 5IO . . . D 4 -31.628 11.606 -20.565 1 49.63 ? CAQ 5IO 903 A 1 HETATM 18 N NAR 5IO . . . D 4 -29.781 15.291 -17.735 1 32.37 ? NAR 5IO 903 A 1 HETATM 19 N NAS 5IO . . . D 4 -28.942 17.364 -18.126 1 32.57 ? NAS 5IO 903 A 1 HETATM 20 O OAT 5IO . . . D 4 -26.655 16.666 -20.168 1 34.18 ? OAT 5IO 903 A 1 HETATM 21 C CAU 5IO . . . D 4 -29.93 14.568 -21.901 1 35.56 ? CAU 5IO 903 A 1 HETATM 22 C CAV 5IO . . . D 4 -27.728 15.982 -20.721 1 33.52 ? CAV 5IO 903 A 1 HETATM 23 C CAW 5IO . . . D 4 -30.15 15.686 -16.478 1 33.34 ? CAW 5IO 903 A 1 HETATM 24 C CAX 5IO . . . D 4 -29.911 16.995 -15.964 1 37.49 ? CAX 5IO 903 A 1 HETATM 25 C CAY 5IO . . . D 4 -28.859 15.668 -19.96 1 34.11 ? CAY 5IO 903 A 1 HETATM 26 C CAZ 5IO . . . D 4 -29.169 16.093 -18.537 1 31.08 ? CAZ 5IO 903 A 1 HETATM 27 C CBA 5IO . . . D 4 -29.276 17.821 -16.885 1 27.93 ? CBA 5IO 903 A 1 HETATM 28 N NBB 5IO . . . D 4 -30.27 9.668 -20.882 1 54.85 ? NBB 5IO 903 A 1 HETATM 29 N NBC 5IO . . . D 4 -31.403 12.183 -21.866 1 48.9 ? NBC 5IO 903 A 1 HETATM 30 S SBD 5IO . . . D 4 -31.29 13.658 -22.656 1 43.3 ? SBD 5IO 903 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #