data_4OFG # _model_server_result.job_id zEBAlr5dXe0weuh5mK6kIA _model_server_result.datetime_utc '2024-10-18 01:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ofg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4OFG # _exptl.entry_id 4OFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OFG _cell.length_a 67.299 _cell.length_b 67.299 _cell.length_c 59.518 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 265 n n PA O2A PCG doub 266 n n PA O5' PCG sing 267 n n PA O3' PCG sing 268 n n O1A HO1A PCG sing 269 n n O5' C5' PCG sing 270 n n C5' C4' PCG sing 271 n n C5' "H5'1" PCG sing 272 n n C5' "H5'2" PCG sing 273 n n C4' O4' PCG sing 274 n n C4' C3' PCG sing 275 n n C4' H4' PCG sing 276 n n O4' C1' PCG sing 277 n n C3' O3' PCG sing 278 n n C3' C2' PCG sing 279 n n C3' H3' PCG sing 280 n n C2' O2' PCG sing 281 n n C2' C1' PCG sing 282 n n C2' H2' PCG sing 283 n n O2' HO2' PCG sing 284 n n C1' N9 PCG sing 285 n n C1' H1' PCG sing 286 n n N9 C8 PCG sing 287 n y N9 C4 PCG sing 288 n y C8 N7 PCG doub 289 n y C8 H8 PCG sing 290 n n N7 C5 PCG sing 291 n y C5 C6 PCG sing 292 n n C5 C4 PCG doub 293 n y C6 O6 PCG doub 294 n n C6 N1 PCG sing 295 n n N1 C2 PCG sing 296 n n N1 HN1 PCG sing 297 n n C2 N2 PCG sing 298 n n C2 N3 PCG doub 299 n n N2 HN21 PCG sing 300 n n N2 HN22 PCG sing 301 n n N3 C4 PCG sing 302 n n # _atom_sites.entry_id 4OFG _atom_sites.fract_transf_matrix[1][1] 0.014859 _atom_sites.fract_transf_matrix[1][2] 0.008579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCG A 1 601 1 PCG PCG . C 3 N2P A 1 602 1 N2P N2P . D 3 N2P A 1 603 2 N2P N2P . E 3 N2P A 1 604 3 N2P N2P . F 3 N2P A 1 605 4 N2P N2P . G 3 N2P A 1 606 5 N2P N2P . H 3 N2P A 1 607 6 N2P N2P . I 4 SO4 A 1 608 1 SO4 SO4 . J 4 SO4 A 1 609 2 SO4 SO4 . K 4 SO4 A 1 610 3 SO4 SO4 . L 5 EOH A 1 611 1 EOH EOH . M 5 EOH A 1 612 2 EOH EOH . N 5 EOH A 1 613 3 EOH EOH . O 5 EOH A 1 614 4 EOH EOH . P 5 EOH A 1 615 5 EOH EOH . Q 5 EOH A 1 616 6 EOH EOH . R 5 EOH A 1 617 6 EOH EOH . S 5 EOH A 1 618 7 EOH EOH . T 5 EOH A 1 619 8 EOH EOH . U 5 EOH A 1 620 9 EOH EOH . V 5 EOH A 1 621 10 EOH EOH . W 5 EOH A 1 622 11 EOH EOH . X 5 EOH A 1 623 12 EOH EOH . Y 6 HOH A 1 701 1 HOH HOH . Y 6 HOH A 2 702 2 HOH HOH . Y 6 HOH A 3 703 3 HOH HOH . Y 6 HOH A 4 704 4 HOH HOH . Y 6 HOH A 5 705 6 HOH HOH . Y 6 HOH A 6 706 7 HOH HOH . Y 6 HOH A 7 707 8 HOH HOH . Y 6 HOH A 8 708 9 HOH HOH . Y 6 HOH A 9 709 10 HOH HOH . Y 6 HOH A 10 710 11 HOH HOH . Y 6 HOH A 11 711 12 HOH HOH . Y 6 HOH A 12 712 13 HOH HOH . Y 6 HOH A 13 713 14 HOH HOH . Y 6 HOH A 14 714 19 HOH HOH . Y 6 HOH A 15 715 21 HOH HOH . Y 6 HOH A 16 716 22 HOH HOH . Y 6 HOH A 17 717 26 HOH HOH . Y 6 HOH A 18 718 27 HOH HOH . Y 6 HOH A 19 719 28 HOH HOH . Y 6 HOH A 20 720 29 HOH HOH . Y 6 HOH A 21 721 30 HOH HOH . Y 6 HOH A 22 722 31 HOH HOH . Y 6 HOH A 23 723 32 HOH HOH . Y 6 HOH A 24 724 33 HOH HOH . Y 6 HOH A 25 725 34 HOH HOH . Y 6 HOH A 26 726 35 HOH HOH . Y 6 HOH A 27 727 37 HOH HOH . Y 6 HOH A 28 728 38 HOH HOH . Y 6 HOH A 29 729 40 HOH HOH . Y 6 HOH A 30 730 41 HOH HOH . Y 6 HOH A 31 731 43 HOH HOH . Y 6 HOH A 32 732 44 HOH HOH . Y 6 HOH A 33 733 45 HOH HOH . Y 6 HOH A 34 734 46 HOH HOH . Y 6 HOH A 35 735 47 HOH HOH . Y 6 HOH A 36 736 49 HOH HOH . Y 6 HOH A 37 737 51 HOH HOH . Y 6 HOH A 38 738 54 HOH HOH . Y 6 HOH A 39 739 60 HOH HOH . Y 6 HOH A 40 740 61 HOH HOH . Y 6 HOH A 41 741 62 HOH HOH . Y 6 HOH A 42 742 63 HOH HOH . Y 6 HOH A 43 743 70 HOH HOH . Y 6 HOH A 44 744 74 HOH HOH . Y 6 HOH A 45 745 75 HOH HOH . Y 6 HOH A 46 746 80 HOH HOH . Y 6 HOH A 47 747 81 HOH HOH . Y 6 HOH A 48 748 84 HOH HOH . Y 6 HOH A 49 749 85 HOH HOH . Y 6 HOH A 50 750 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . B 2 11.218 43.037 10.853 1 19.13 ? PA PCG 601 A 1 HETATM 2 O O1A PCG . . . B 2 11.371 43.53 12.242 1 21.51 ? O1A PCG 601 A 1 HETATM 3 O O2A PCG . . . B 2 10.325 44.007 9.908 1 21.76 ? O2A PCG 601 A 1 HETATM 4 O O5' PCG . . . B 2 10.522 41.666 10.847 1 21.08 ? O5' PCG 601 A 1 HETATM 5 C C5' PCG . . . B 2 10.469 41.152 9.398 1 24.83 ? C5' PCG 601 A 1 HETATM 6 C C4' PCG . . . B 2 11.855 40.767 9.033 1 23.66 ? C4' PCG 601 A 1 HETATM 7 O O4' PCG . . . B 2 12.226 39.983 7.873 1 22.28 ? O4' PCG 601 A 1 HETATM 8 C C3' PCG . . . B 2 12.655 42.038 8.871 1 20.76 ? C3' PCG 601 A 1 HETATM 9 O O3' PCG . . . B 2 12.676 42.839 10.114 1 18.97 ? O3' PCG 601 A 1 HETATM 10 C C2' PCG . . . B 2 14.016 41.596 8.358 1 22.49 ? C2' PCG 601 A 1 HETATM 11 O O2' PCG . . . B 2 15.049 41.498 9.293 1 24.79 ? O2' PCG 601 A 1 HETATM 12 C C1' PCG . . . B 2 13.626 40.305 7.603 1 21.1 ? C1' PCG 601 A 1 HETATM 13 N N9 PCG . . . B 2 13.779 40.528 6.159 1 21.27 ? N9 PCG 601 A 1 HETATM 14 C C8 PCG . . . B 2 14.59 39.701 5.285 1 24.63 ? C8 PCG 601 A 1 HETATM 15 N N7 PCG . . . B 2 14.599 40.38 4 1 23.18 ? N7 PCG 601 A 1 HETATM 16 C C5 PCG . . . B 2 13.56 41.417 4.029 1 21.84 ? C5 PCG 601 A 1 HETATM 17 C C6 PCG . . . B 2 13.012 42.299 2.946 1 19.63 ? C6 PCG 601 A 1 HETATM 18 O O6 PCG . . . B 2 13.529 42.178 1.653 1 29.89 ? O6 PCG 601 A 1 HETATM 19 N N1 PCG . . . B 2 12.024 43.21 3.241 1 24.84 ? N1 PCG 601 A 1 HETATM 20 C C2 PCG . . . B 2 11.519 43.318 4.558 1 25.59 ? C2 PCG 601 A 1 HETATM 21 N N2 PCG . . . B 2 10.466 44.277 4.87 1 25.76 ? N2 PCG 601 A 1 HETATM 22 N N3 PCG . . . B 2 12.071 42.439 5.644 1 18.62 ? N3 PCG 601 A 1 HETATM 23 C C4 PCG . . . B 2 13.06 41.524 5.347 1 18.49 ? C4 PCG 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #