data_4OFG # _model_server_result.job_id LLexwlZyPOCVoKVehzi2TA _model_server_result.datetime_utc '2024-10-18 01:18:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ofg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 4OFG # _exptl.entry_id 4OFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE-1,5-DIAMINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OFG _cell.length_a 67.299 _cell.length_b 67.299 _cell.length_c 59.518 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C5 H14 N2' _chem_comp.formula_weight 102.178 _chem_comp.id N2P _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE-1,5-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 N2P sing 245 n n C1 NE2 N2P sing 246 n n C1 H1C1 N2P sing 247 n n C1 H1C2 N2P sing 248 n n C2 C3 N2P sing 249 n n C2 H2C1 N2P sing 250 n n C2 H2C2 N2P sing 251 n n C3 C4 N2P sing 252 n n C3 H3C1 N2P sing 253 n n C3 H3C2 N2P sing 254 n n C4 C5 N2P sing 255 n n C4 H4C1 N2P sing 256 n n C4 H4C2 N2P sing 257 n n NE2 HE21 N2P sing 258 n n NE2 HE22 N2P sing 259 n n C5 N1 N2P sing 260 n n C5 H5C1 N2P sing 261 n n C5 H5C2 N2P sing 262 n n N1 H1N1 N2P sing 263 n n N1 H1N2 N2P sing 264 n n # _atom_sites.entry_id 4OFG _atom_sites.fract_transf_matrix[1][1] 0.014859 _atom_sites.fract_transf_matrix[1][2] 0.008579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCG A 1 601 1 PCG PCG . C 3 N2P A 1 602 1 N2P N2P . D 3 N2P A 1 603 2 N2P N2P . E 3 N2P A 1 604 3 N2P N2P . F 3 N2P A 1 605 4 N2P N2P . G 3 N2P A 1 606 5 N2P N2P . H 3 N2P A 1 607 6 N2P N2P . I 4 SO4 A 1 608 1 SO4 SO4 . J 4 SO4 A 1 609 2 SO4 SO4 . K 4 SO4 A 1 610 3 SO4 SO4 . L 5 EOH A 1 611 1 EOH EOH . M 5 EOH A 1 612 2 EOH EOH . N 5 EOH A 1 613 3 EOH EOH . O 5 EOH A 1 614 4 EOH EOH . P 5 EOH A 1 615 5 EOH EOH . Q 5 EOH A 1 616 6 EOH EOH . R 5 EOH A 1 617 6 EOH EOH . S 5 EOH A 1 618 7 EOH EOH . T 5 EOH A 1 619 8 EOH EOH . U 5 EOH A 1 620 9 EOH EOH . V 5 EOH A 1 621 10 EOH EOH . W 5 EOH A 1 622 11 EOH EOH . X 5 EOH A 1 623 12 EOH EOH . Y 6 HOH A 1 701 1 HOH HOH . Y 6 HOH A 2 702 2 HOH HOH . Y 6 HOH A 3 703 3 HOH HOH . Y 6 HOH A 4 704 4 HOH HOH . Y 6 HOH A 5 705 6 HOH HOH . Y 6 HOH A 6 706 7 HOH HOH . Y 6 HOH A 7 707 8 HOH HOH . Y 6 HOH A 8 708 9 HOH HOH . Y 6 HOH A 9 709 10 HOH HOH . Y 6 HOH A 10 710 11 HOH HOH . Y 6 HOH A 11 711 12 HOH HOH . Y 6 HOH A 12 712 13 HOH HOH . Y 6 HOH A 13 713 14 HOH HOH . Y 6 HOH A 14 714 19 HOH HOH . Y 6 HOH A 15 715 21 HOH HOH . Y 6 HOH A 16 716 22 HOH HOH . Y 6 HOH A 17 717 26 HOH HOH . Y 6 HOH A 18 718 27 HOH HOH . Y 6 HOH A 19 719 28 HOH HOH . Y 6 HOH A 20 720 29 HOH HOH . Y 6 HOH A 21 721 30 HOH HOH . Y 6 HOH A 22 722 31 HOH HOH . Y 6 HOH A 23 723 32 HOH HOH . Y 6 HOH A 24 724 33 HOH HOH . Y 6 HOH A 25 725 34 HOH HOH . Y 6 HOH A 26 726 35 HOH HOH . Y 6 HOH A 27 727 37 HOH HOH . Y 6 HOH A 28 728 38 HOH HOH . Y 6 HOH A 29 729 40 HOH HOH . Y 6 HOH A 30 730 41 HOH HOH . Y 6 HOH A 31 731 43 HOH HOH . Y 6 HOH A 32 732 44 HOH HOH . Y 6 HOH A 33 733 45 HOH HOH . Y 6 HOH A 34 734 46 HOH HOH . Y 6 HOH A 35 735 47 HOH HOH . Y 6 HOH A 36 736 49 HOH HOH . Y 6 HOH A 37 737 51 HOH HOH . Y 6 HOH A 38 738 54 HOH HOH . Y 6 HOH A 39 739 60 HOH HOH . Y 6 HOH A 40 740 61 HOH HOH . Y 6 HOH A 41 741 62 HOH HOH . Y 6 HOH A 42 742 63 HOH HOH . Y 6 HOH A 43 743 70 HOH HOH . Y 6 HOH A 44 744 74 HOH HOH . Y 6 HOH A 45 745 75 HOH HOH . Y 6 HOH A 46 746 80 HOH HOH . Y 6 HOH A 47 747 81 HOH HOH . Y 6 HOH A 48 748 84 HOH HOH . Y 6 HOH A 49 749 85 HOH HOH . Y 6 HOH A 50 750 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N2P . . . H 3 16.184 49.865 28.621 1 51.61 ? C1 N2P 607 A 1 HETATM 2 C C2 N2P . . . H 3 16.983 51.024 28.153 1 57.16 ? C2 N2P 607 A 1 HETATM 3 C C3 N2P . . . H 3 18.383 50.63 27.814 1 58.21 ? C3 N2P 607 A 1 HETATM 4 C C4 N2P . . . H 3 19.363 51.701 28.232 0.82 57.93 ? C4 N2P 607 A 1 HETATM 5 N NE2 N2P . . . H 3 14.893 49.858 27.999 1 51.24 ? NE2 N2P 607 A 1 HETATM 6 C C5 N2P . . . H 3 20.761 51.281 27.953 1 54.72 ? C5 N2P 607 A 1 HETATM 7 N N1 N2P . . . H 3 21.661 51.453 29.046 1 52.3 ? N1 N2P 607 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #