data_4OFK # _model_server_result.job_id pGfeYsCwhQBwEFc5F2QCyw _model_server_result.datetime_utc '2024-11-23 20:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ofk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":903}' # _entry.id 4OFK # _exptl.entry_id 4OFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.61 _cell.angle_gamma 90 _cell.entry_id 4OFK _cell.length_a 61.812 _cell.length_b 54.131 _cell.length_c 63.623 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 352 1_555 A SG CYS 88 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 B SG CYS 30 B CYS 352 1_555 B SG CYS 88 B CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A ND2 ASN 69 A ASN 391 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 69 B ASN 391 1_555 F C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 68 n n C1 C2 EDO sing 69 n n C1 H11 EDO sing 70 n n C1 H12 EDO sing 71 n n O1 HO1 EDO sing 72 n n C2 O2 EDO sing 73 n n C2 H21 EDO sing 74 n n C2 H22 EDO sing 75 n n O2 HO2 EDO sing 76 n n # _atom_sites.entry_id 4OFK _atom_sites.fract_transf_matrix[1][1] 0.016178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004217 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 901 NAG NAG . D 3 CL A 1 902 1 CL CL . E 4 EDO A 1 903 1 EDO EDO . F 2 NAG B 1 901 901 NAG NAG . G 5 SO4 B 1 902 1 SO4 SO4 . H 4 EDO B 1 903 1 EDO EDO . I 6 HOH A 1 1001 1 HOH HOH . I 6 HOH A 2 1002 2 HOH HOH . I 6 HOH A 3 1003 3 HOH HOH . I 6 HOH A 4 1004 5 HOH HOH . I 6 HOH A 5 1005 6 HOH HOH . I 6 HOH A 6 1006 9 HOH HOH . I 6 HOH A 7 1007 11 HOH HOH . I 6 HOH A 8 1008 12 HOH HOH . I 6 HOH A 9 1009 15 HOH HOH . I 6 HOH A 10 1010 18 HOH HOH . I 6 HOH A 11 1011 19 HOH HOH . I 6 HOH A 12 1012 21 HOH HOH . I 6 HOH A 13 1013 22 HOH HOH . I 6 HOH A 14 1014 23 HOH HOH . I 6 HOH A 15 1015 29 HOH HOH . I 6 HOH A 16 1016 32 HOH HOH . I 6 HOH A 17 1017 33 HOH HOH . I 6 HOH A 18 1018 34 HOH HOH . I 6 HOH A 19 1019 35 HOH HOH . I 6 HOH A 20 1020 36 HOH HOH . I 6 HOH A 21 1021 39 HOH HOH . I 6 HOH A 22 1022 41 HOH HOH . I 6 HOH A 23 1023 44 HOH HOH . I 6 HOH A 24 1024 45 HOH HOH . I 6 HOH A 25 1025 47 HOH HOH . I 6 HOH A 26 1026 48 HOH HOH . I 6 HOH A 27 1027 49 HOH HOH . I 6 HOH A 28 1028 54 HOH HOH . I 6 HOH A 29 1029 55 HOH HOH . I 6 HOH A 30 1030 56 HOH HOH . I 6 HOH A 31 1031 57 HOH HOH . I 6 HOH A 32 1032 58 HOH HOH . I 6 HOH A 33 1033 59 HOH HOH . I 6 HOH A 34 1034 61 HOH HOH . I 6 HOH A 35 1035 63 HOH HOH . I 6 HOH A 36 1036 64 HOH HOH . I 6 HOH A 37 1037 65 HOH HOH . I 6 HOH A 38 1038 66 HOH HOH . I 6 HOH A 39 1039 67 HOH HOH . I 6 HOH A 40 1040 68 HOH HOH . I 6 HOH A 41 1041 69 HOH HOH . I 6 HOH A 42 1042 70 HOH HOH . I 6 HOH A 43 1043 73 HOH HOH . I 6 HOH A 44 1044 76 HOH HOH . I 6 HOH A 45 1045 78 HOH HOH . I 6 HOH A 46 1046 79 HOH HOH . I 6 HOH A 47 1047 84 HOH HOH . I 6 HOH A 48 1048 89 HOH HOH . I 6 HOH A 49 1049 90 HOH HOH . I 6 HOH A 50 1050 92 HOH HOH . I 6 HOH A 51 1051 93 HOH HOH . I 6 HOH A 52 1052 94 HOH HOH . I 6 HOH A 53 1053 100 HOH HOH . I 6 HOH A 54 1054 103 HOH HOH . I 6 HOH A 55 1055 106 HOH HOH . I 6 HOH A 56 1056 109 HOH HOH . I 6 HOH A 57 1057 111 HOH HOH . I 6 HOH A 58 1058 117 HOH HOH . I 6 HOH A 59 1059 118 HOH HOH . I 6 HOH A 60 1060 119 HOH HOH . I 6 HOH A 61 1061 120 HOH HOH . I 6 HOH A 62 1062 121 HOH HOH . I 6 HOH A 63 1063 123 HOH HOH . I 6 HOH A 64 1064 124 HOH HOH . I 6 HOH A 65 1065 125 HOH HOH . I 6 HOH A 66 1066 126 HOH HOH . I 6 HOH A 67 1067 127 HOH HOH . I 6 HOH A 68 1068 128 HOH HOH . I 6 HOH A 69 1069 131 HOH HOH . I 6 HOH A 70 1070 132 HOH HOH . I 6 HOH A 71 1071 133 HOH HOH . I 6 HOH A 72 1072 134 HOH HOH . I 6 HOH A 73 1073 136 HOH HOH . I 6 HOH A 74 1074 138 HOH HOH . I 6 HOH A 75 1075 139 HOH HOH . I 6 HOH A 76 1076 141 HOH HOH . I 6 HOH A 77 1077 142 HOH HOH . J 6 HOH B 1 1001 4 HOH HOH . J 6 HOH B 2 1002 7 HOH HOH . J 6 HOH B 3 1003 8 HOH HOH . J 6 HOH B 4 1004 10 HOH HOH . J 6 HOH B 5 1005 13 HOH HOH . J 6 HOH B 6 1006 14 HOH HOH . J 6 HOH B 7 1007 16 HOH HOH . J 6 HOH B 8 1008 17 HOH HOH . J 6 HOH B 9 1009 20 HOH HOH . J 6 HOH B 10 1010 24 HOH HOH . J 6 HOH B 11 1011 25 HOH HOH . J 6 HOH B 12 1012 26 HOH HOH . J 6 HOH B 13 1013 27 HOH HOH . J 6 HOH B 14 1014 28 HOH HOH . J 6 HOH B 15 1015 30 HOH HOH . J 6 HOH B 16 1016 31 HOH HOH . J 6 HOH B 17 1017 37 HOH HOH . J 6 HOH B 18 1018 38 HOH HOH . J 6 HOH B 19 1019 40 HOH HOH . J 6 HOH B 20 1020 42 HOH HOH . J 6 HOH B 21 1021 43 HOH HOH . J 6 HOH B 22 1022 46 HOH HOH . J 6 HOH B 23 1023 50 HOH HOH . J 6 HOH B 24 1024 51 HOH HOH . J 6 HOH B 25 1025 52 HOH HOH . J 6 HOH B 26 1026 53 HOH HOH . J 6 HOH B 27 1027 60 HOH HOH . J 6 HOH B 28 1028 62 HOH HOH . J 6 HOH B 29 1029 71 HOH HOH . J 6 HOH B 30 1030 72 HOH HOH . J 6 HOH B 31 1031 74 HOH HOH . J 6 HOH B 32 1032 75 HOH HOH . J 6 HOH B 33 1033 77 HOH HOH . J 6 HOH B 34 1034 80 HOH HOH . J 6 HOH B 35 1035 81 HOH HOH . J 6 HOH B 36 1036 82 HOH HOH . J 6 HOH B 37 1037 83 HOH HOH . J 6 HOH B 38 1038 85 HOH HOH . J 6 HOH B 39 1039 86 HOH HOH . J 6 HOH B 40 1040 87 HOH HOH . J 6 HOH B 41 1041 88 HOH HOH . J 6 HOH B 42 1042 91 HOH HOH . J 6 HOH B 43 1043 95 HOH HOH . J 6 HOH B 44 1044 96 HOH HOH . J 6 HOH B 45 1045 97 HOH HOH . J 6 HOH B 46 1046 98 HOH HOH . J 6 HOH B 47 1047 99 HOH HOH . J 6 HOH B 48 1048 101 HOH HOH . J 6 HOH B 49 1049 102 HOH HOH . J 6 HOH B 50 1050 104 HOH HOH . J 6 HOH B 51 1051 105 HOH HOH . J 6 HOH B 52 1052 107 HOH HOH . J 6 HOH B 53 1053 108 HOH HOH . J 6 HOH B 54 1054 110 HOH HOH . J 6 HOH B 55 1055 112 HOH HOH . J 6 HOH B 56 1056 113 HOH HOH . J 6 HOH B 57 1057 114 HOH HOH . J 6 HOH B 58 1058 115 HOH HOH . J 6 HOH B 59 1059 116 HOH HOH . J 6 HOH B 60 1060 122 HOH HOH . J 6 HOH B 61 1061 129 HOH HOH . J 6 HOH B 62 1062 130 HOH HOH . J 6 HOH B 63 1063 135 HOH HOH . J 6 HOH B 64 1064 137 HOH HOH . J 6 HOH B 65 1065 140 HOH HOH . J 6 HOH B 66 1066 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -0.604 5.324 -15.285 1 43.05 ? C1 EDO 903 B 1 HETATM 2 O O1 EDO . . . H 4 0.233 6.205 -14.53 1 43.06 ? O1 EDO 903 B 1 HETATM 3 C C2 EDO . . . H 4 0.12 4.93 -16.561 1 43.05 ? C2 EDO 903 B 1 HETATM 4 O O2 EDO . . . H 4 1.356 4.304 -16.204 1 43.8 ? O2 EDO 903 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #