data_4OFL # _model_server_result.job_id 7vCShdzI2x2WaC_54F6k9w _model_server_result.datetime_utc '2024-11-25 18:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ofl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4OFL # _exptl.entry_id 4OFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.72 _cell.angle_gamma 90 _cell.entry_id 4OFL _cell.length_a 47.04 _cell.length_b 213.83 _cell.length_c 52.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 471 A CYS 471 1_555 A SG CYS 498 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 471 B CYS 471 1_555 B SG CYS 498 B CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A NE2 HIS 482 A HIS 482 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 C NI NI . A NI 501 1_555 D N HIS . A HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc3 C NI NI . A NI 501 1_555 D ND1 HIS . A HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 C NI NI . A NI 501 1_555 D OXT HIS . A HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 C NI NI . A NI 501 1_555 E O HIS . A HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc6 C NI NI . A NI 501 1_555 E ND1 HIS . A HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc7 B NE2 HIS 482 B HIS 482 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 F NI NI . B NI 501 1_555 G N HIS . B HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc9 F NI NI . B NI 501 1_555 G OXT HIS . B HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 F NI NI . B NI 501 1_555 G ND1 HIS . B HIS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 F NI NI . B NI 501 1_555 H ND1 HIS . B HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc12 F NI NI . B NI 501 1_555 H O HIS . B HIS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OFL _atom_sites.fract_transf_matrix[1][1] 0.021259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 501 501 NI NI . D 3 HIS A 1 502 502 HIS HIS . E 3 HIS A 1 503 503 HIS HIS . F 2 NI B 1 501 501 NI NI . G 3 HIS B 1 502 502 HIS HIS . H 3 HIS B 1 503 503 HIS HIS . I 4 HOH A 1 601 601 HOH HOH . I 4 HOH A 2 602 602 HOH HOH . I 4 HOH A 3 603 603 HOH HOH . I 4 HOH A 4 604 604 HOH HOH . I 4 HOH A 5 605 606 HOH HOH . I 4 HOH A 6 606 607 HOH HOH . I 4 HOH A 7 607 608 HOH HOH . I 4 HOH A 8 608 609 HOH HOH . I 4 HOH A 9 609 610 HOH HOH . I 4 HOH A 10 610 611 HOH HOH . I 4 HOH A 11 611 612 HOH HOH . I 4 HOH A 12 612 613 HOH HOH . I 4 HOH A 13 613 614 HOH HOH . I 4 HOH A 14 614 615 HOH HOH . I 4 HOH A 15 615 616 HOH HOH . I 4 HOH A 16 616 617 HOH HOH . I 4 HOH A 17 617 618 HOH HOH . I 4 HOH A 18 618 619 HOH HOH . I 4 HOH A 19 619 620 HOH HOH . I 4 HOH A 20 620 621 HOH HOH . I 4 HOH A 21 621 622 HOH HOH . I 4 HOH A 22 622 623 HOH HOH . I 4 HOH A 23 623 624 HOH HOH . I 4 HOH A 24 624 625 HOH HOH . I 4 HOH A 25 625 626 HOH HOH . I 4 HOH A 26 626 627 HOH HOH . I 4 HOH A 27 627 629 HOH HOH . I 4 HOH A 28 628 630 HOH HOH . I 4 HOH A 29 629 632 HOH HOH . I 4 HOH A 30 630 633 HOH HOH . I 4 HOH A 31 631 634 HOH HOH . I 4 HOH A 32 632 635 HOH HOH . I 4 HOH A 33 633 636 HOH HOH . I 4 HOH A 34 634 637 HOH HOH . I 4 HOH A 35 635 638 HOH HOH . I 4 HOH A 36 636 639 HOH HOH . I 4 HOH A 37 637 640 HOH HOH . I 4 HOH A 38 638 641 HOH HOH . I 4 HOH A 39 639 642 HOH HOH . I 4 HOH A 40 640 643 HOH HOH . I 4 HOH A 41 641 644 HOH HOH . I 4 HOH A 42 642 645 HOH HOH . I 4 HOH A 43 643 646 HOH HOH . I 4 HOH A 44 644 647 HOH HOH . I 4 HOH A 45 645 648 HOH HOH . I 4 HOH A 46 646 649 HOH HOH . I 4 HOH A 47 647 650 HOH HOH . I 4 HOH A 48 648 651 HOH HOH . I 4 HOH A 49 649 652 HOH HOH . I 4 HOH A 50 650 653 HOH HOH . I 4 HOH A 51 651 654 HOH HOH . I 4 HOH A 52 652 655 HOH HOH . I 4 HOH A 53 653 656 HOH HOH . I 4 HOH A 54 654 657 HOH HOH . I 4 HOH A 55 655 658 HOH HOH . I 4 HOH A 56 656 660 HOH HOH . I 4 HOH A 57 657 661 HOH HOH . I 4 HOH A 58 658 662 HOH HOH . I 4 HOH A 59 659 663 HOH HOH . I 4 HOH A 60 660 664 HOH HOH . I 4 HOH A 61 661 665 HOH HOH . I 4 HOH A 62 662 666 HOH HOH . I 4 HOH A 63 663 667 HOH HOH . I 4 HOH A 64 664 668 HOH HOH . I 4 HOH A 65 665 669 HOH HOH . I 4 HOH A 66 666 670 HOH HOH . I 4 HOH A 67 667 671 HOH HOH . J 4 HOH B 1 601 605 HOH HOH . J 4 HOH B 2 602 601 HOH HOH . J 4 HOH B 3 603 602 HOH HOH . J 4 HOH B 4 604 603 HOH HOH . J 4 HOH B 5 605 604 HOH HOH . J 4 HOH B 6 606 605 HOH HOH . J 4 HOH B 7 607 606 HOH HOH . J 4 HOH B 8 608 607 HOH HOH . J 4 HOH B 9 609 608 HOH HOH . J 4 HOH B 10 610 609 HOH HOH . J 4 HOH B 11 611 610 HOH HOH . J 4 HOH B 12 612 611 HOH HOH . J 4 HOH B 13 613 612 HOH HOH . J 4 HOH B 14 614 613 HOH HOH . J 4 HOH B 15 615 614 HOH HOH . J 4 HOH B 16 616 615 HOH HOH . J 4 HOH B 17 617 616 HOH HOH . J 4 HOH B 18 618 617 HOH HOH . J 4 HOH B 19 619 618 HOH HOH . J 4 HOH B 20 620 619 HOH HOH . J 4 HOH B 21 621 620 HOH HOH . J 4 HOH B 22 622 621 HOH HOH . J 4 HOH B 23 623 622 HOH HOH . J 4 HOH B 24 624 623 HOH HOH . J 4 HOH B 25 625 624 HOH HOH . J 4 HOH B 26 626 625 HOH HOH . J 4 HOH B 27 627 626 HOH HOH . J 4 HOH B 28 628 627 HOH HOH . J 4 HOH B 29 629 628 HOH HOH . J 4 HOH B 30 630 629 HOH HOH . J 4 HOH B 31 631 630 HOH HOH . J 4 HOH B 32 632 631 HOH HOH . J 4 HOH B 33 633 632 HOH HOH . J 4 HOH B 34 634 633 HOH HOH . J 4 HOH B 35 635 634 HOH HOH . J 4 HOH B 36 636 635 HOH HOH . J 4 HOH B 37 637 636 HOH HOH . J 4 HOH B 38 638 637 HOH HOH . J 4 HOH B 39 639 638 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.167 _atom_site.Cartn_y 22.903 _atom_site.Cartn_z 38.227 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #