data_4OFO # _model_server_result.job_id dtMlqQg8Hag91ykxfxkMmg _model_server_result.datetime_utc '2024-10-20 07:45:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ofo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 4OFO # _exptl.entry_id 4OFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OFO _cell.length_a 101.23 _cell.length_b 144.69 _cell.length_c 149.19 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 471 A CYS 471 1_555 A SG CYS 498 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 471 B CYS 471 1_555 B SG CYS 498 B CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 471 C CYS 471 1_555 C SG CYS 498 C CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 471 D CYS 471 1_555 D SG CYS 498 D CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE1 GLU 105 A GLU 105 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 A OE2 GLU 105 A GLU 105 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A NE2 HIS 115 A HIS 115 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 A NE2 HIS 244 A HIS 244 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc5 E NI NI . A NI 501 1_555 I O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 E NI NI . A NI 501 1_555 B NE2 HIS 244 B HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 E NI NI . A NI 501 1_555 J O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 I O HOH . A HOH 607 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 I O HOH . A HOH 608 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 B OE1 GLU 105 B GLU 105 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc11 B OE2 GLU 105 B GLU 105 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc12 B NE2 HIS 115 B HIS 115 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc13 C OE1 GLU 105 C GLU 105 1_555 G NI NI . C NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc14 C OE2 GLU 105 C GLU 105 1_555 G NI NI . C NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc15 C NE2 HIS 115 C HIS 115 1_555 G NI NI . C NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc16 C NE2 HIS 244 C HIS 244 1_555 H NI NI . D NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc17 G NI NI . C NI 501 1_555 K O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc18 G NI NI . C NI 501 1_555 D NE2 HIS 244 D HIS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc19 G NI NI . C NI 501 1_555 L O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc20 K O HOH . C HOH 609 1_555 H NI NI . D NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc21 D OE2 GLU 105 D GLU 105 1_555 H NI NI . D NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc22 D OE1 GLU 105 D GLU 105 1_555 H NI NI . D NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc23 D NE2 HIS 115 D HIS 115 1_555 H NI NI . D NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc24 H NI NI . D NI 501 1_555 L O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OFO _atom_sites.fract_transf_matrix[1][1] 0.009878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NI A 1 501 501 NI NI . F 2 NI B 1 501 501 NI NI . G 2 NI C 1 501 501 NI NI . H 2 NI D 1 501 501 NI NI . I 3 HOH A 1 601 601 HOH HOH . I 3 HOH A 2 602 604 HOH HOH . I 3 HOH A 3 603 605 HOH HOH . I 3 HOH A 4 604 606 HOH HOH . I 3 HOH A 5 605 607 HOH HOH . I 3 HOH A 6 606 610 HOH HOH . I 3 HOH A 7 607 611 HOH HOH . I 3 HOH A 8 608 621 HOH HOH . I 3 HOH A 9 609 1 HOH HOH . I 3 HOH A 10 610 2 HOH HOH . J 3 HOH B 1 601 601 HOH HOH . J 3 HOH B 2 602 606 HOH HOH . J 3 HOH B 3 603 610 HOH HOH . J 3 HOH B 4 604 611 HOH HOH . J 3 HOH B 5 605 614 HOH HOH . J 3 HOH B 6 606 620 HOH HOH . K 3 HOH C 1 601 603 HOH HOH . K 3 HOH C 2 602 604 HOH HOH . K 3 HOH C 3 603 606 HOH HOH . K 3 HOH C 4 604 607 HOH HOH . K 3 HOH C 5 605 608 HOH HOH . K 3 HOH C 6 606 611 HOH HOH . K 3 HOH C 7 607 612 HOH HOH . K 3 HOH C 8 608 613 HOH HOH . K 3 HOH C 9 609 614 HOH HOH . L 3 HOH D 1 601 601 HOH HOH . L 3 HOH D 2 602 602 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 52.806 _atom_site.Cartn_y 90.627 _atom_site.Cartn_z 137.59 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 170 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #