data_4OGK # _model_server_result.job_id 6085gHrpJMB3O1f0-XGAww _model_server_result.datetime_utc '2025-06-30 12:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":302}' # _entry.id 4OGK # _exptl.entry_id 4OGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OGK _cell.length_a 89.97 _cell.length_b 89.97 _cell.length_c 256.56 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OE2 GLU 49 E GLU 49 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc2 E O ILE 69 E ILE 69 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc3 F OE1 GLU 49 F GLU 49 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc4 F OE2 GLU 49 F GLU 49 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.293 ? metalc ? metalc5 F O ILE 69 F ILE 69 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc6 F OG SER 73 F SER 73 1_555 R K K . F K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.301 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 273 n n O1 HO1 PG4 sing 274 n n C1 C2 PG4 sing 275 n n C1 H11 PG4 sing 276 n n C1 H12 PG4 sing 277 n n C2 O2 PG4 sing 278 n n C2 H21 PG4 sing 279 n n C2 H22 PG4 sing 280 n n O2 C3 PG4 sing 281 n n C3 C4 PG4 sing 282 n n C3 H31 PG4 sing 283 n n C3 H32 PG4 sing 284 n n C4 O3 PG4 sing 285 n n C4 H41 PG4 sing 286 n n C4 H42 PG4 sing 287 n n O3 C5 PG4 sing 288 n n C5 C6 PG4 sing 289 n n C5 H51 PG4 sing 290 n n C5 H52 PG4 sing 291 n n C6 O4 PG4 sing 292 n n C6 H61 PG4 sing 293 n n C6 H62 PG4 sing 294 n n O4 C7 PG4 sing 295 n n C7 C8 PG4 sing 296 n n C7 H71 PG4 sing 297 n n C7 H72 PG4 sing 298 n n C8 O5 PG4 sing 299 n n C8 H81 PG4 sing 300 n n C8 H82 PG4 sing 301 n n O5 HO5 PG4 sing 302 n n # _atom_sites.entry_id 4OGK _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0.006417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 THM A 1 301 301 THM THM . H 3 IPA A 1 302 6 IPA IPA . I 4 EDO A 1 303 1 EDO EDO . J 2 THM B 1 301 301 THM THM . K 4 EDO C 1 301 4 EDO EDO . L 2 THM D 1 301 301 THM THM . M 5 PEG D 1 302 1 PEG PEG . N 2 THM E 1 301 301 THM THM . O 6 PG4 E 1 302 2 PG4 PG4 . P 4 EDO E 1 303 5 EDO EDO . Q 2 THM F 1 301 301 THM THM . R 7 K F 1 302 302 K K . S 4 EDO F 1 303 3 EDO EDO . T 8 HOH A 1 401 10 HOH HOH . T 8 HOH A 2 402 53 HOH HOH . T 8 HOH A 3 403 169 HOH HOH . T 8 HOH A 4 404 16 HOH HOH . T 8 HOH A 5 405 203 HOH HOH . T 8 HOH A 6 406 300 HOH HOH . T 8 HOH A 7 407 308 HOH HOH . T 8 HOH A 8 408 544 HOH HOH . T 8 HOH A 9 409 856 HOH HOH . T 8 HOH A 10 410 863 HOH HOH . U 8 HOH B 1 401 108 HOH HOH . U 8 HOH B 2 402 114 HOH HOH . U 8 HOH B 3 403 123 HOH HOH . U 8 HOH B 4 404 168 HOH HOH . U 8 HOH B 5 405 91 HOH HOH . U 8 HOH B 6 406 181 HOH HOH . U 8 HOH B 7 407 362 HOH HOH . U 8 HOH B 8 408 445 HOH HOH . U 8 HOH B 9 409 585 HOH HOH . U 8 HOH B 10 410 970 HOH HOH . V 8 HOH C 1 401 12 HOH HOH . V 8 HOH C 2 402 82 HOH HOH . V 8 HOH C 3 403 2 HOH HOH . V 8 HOH C 4 404 4 HOH HOH . V 8 HOH C 5 405 5 HOH HOH . V 8 HOH C 6 406 69 HOH HOH . V 8 HOH C 7 407 266 HOH HOH . V 8 HOH C 8 408 496 HOH HOH . V 8 HOH C 9 409 567 HOH HOH . V 8 HOH C 10 410 663 HOH HOH . V 8 HOH C 11 411 859 HOH HOH . W 8 HOH D 1 401 14 HOH HOH . W 8 HOH D 2 402 101 HOH HOH . W 8 HOH D 3 403 1 HOH HOH . W 8 HOH D 4 404 147 HOH HOH . W 8 HOH D 5 405 156 HOH HOH . W 8 HOH D 6 406 306 HOH HOH . W 8 HOH D 7 407 609 HOH HOH . X 8 HOH E 1 401 67 HOH HOH . X 8 HOH E 2 402 92 HOH HOH . X 8 HOH E 3 403 95 HOH HOH . X 8 HOH E 4 404 141 HOH HOH . X 8 HOH E 5 405 155 HOH HOH . X 8 HOH E 6 406 6 HOH HOH . X 8 HOH E 7 407 309 HOH HOH . X 8 HOH E 8 408 583 HOH HOH . X 8 HOH E 9 409 603 HOH HOH . X 8 HOH E 10 410 678 HOH HOH . X 8 HOH E 11 411 701 HOH HOH . X 8 HOH E 12 412 853 HOH HOH . X 8 HOH E 13 413 969 HOH HOH . Y 8 HOH F 1 401 112 HOH HOH . Y 8 HOH F 2 402 144 HOH HOH . Y 8 HOH F 3 403 3 HOH HOH . Y 8 HOH F 4 404 441 HOH HOH . Y 8 HOH F 5 405 864 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . O 6 -50.303 74.895 -25.888 1 66 ? O1 PG4 302 E 1 HETATM 2 C C1 PG4 . . . O 6 -49.803 74.731 -24.612 1 67.13 ? C1 PG4 302 E 1 HETATM 3 C C2 PG4 . . . O 6 -50.819 74.081 -23.732 1 68.97 ? C2 PG4 302 E 1 HETATM 4 O O2 PG4 . . . O 6 -50.337 73.952 -22.449 1 68.28 ? O2 PG4 302 E 1 HETATM 5 C C3 PG4 . . . O 6 -51.081 73.333 -21.473 1 66.6 ? C3 PG4 302 E 1 HETATM 6 C C4 PG4 . . . O 6 -50.232 73.324 -20.252 1 66.41 ? C4 PG4 302 E 1 HETATM 7 O O3 PG4 . . . O 6 -48.928 73.466 -20.664 1 66.42 ? O3 PG4 302 E 1 HETATM 8 C C5 PG4 . . . O 6 -48.036 74.177 -19.896 1 64.65 ? C5 PG4 302 E 1 HETATM 9 C C6 PG4 . . . O 6 -47.172 73.281 -19.076 1 63.43 ? C6 PG4 302 E 1 HETATM 10 O O4 PG4 . . . O 6 -47.847 73.003 -17.914 1 63.34 ? O4 PG4 302 E 1 HETATM 11 C C7 PG4 . . . O 6 -47.176 72.518 -16.814 1 61.7 ? C7 PG4 302 E 1 HETATM 12 C C8 PG4 . . . O 6 -48.03 72.723 -15.61 1 60.7 ? C8 PG4 302 E 1 HETATM 13 O O5 PG4 . . . O 6 -47.305 72.765 -14.433 1 60.25 ? O5 PG4 302 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #