data_4OGN # _model_server_result.job_id VftTHHgR67TcwRdmaaVn0A _model_server_result.datetime_utc '2025-02-05 06:07:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4OGN # _exptl.entry_id 4OGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 657.647 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-{[(3R,5R,6S)-1-[(1S)-2-(tert-butylsulfonyl)-1-cyclopropylethyl]-5-(3-chlorophenyl)-6-(4-chlorophenyl)-3-methyl-2-oxopiperidin-3-yl]methyl}pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OGN _cell.length_a 45.517 _cell.length_b 45.517 _cell.length_c 208.624 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H38 Cl2 N2 O5 S' _chem_comp.formula_weight 657.647 _chem_comp.id 2U5 _chem_comp.mon_nstd_flag . _chem_comp.name '6-{[(3R,5R,6S)-1-[(1S)-2-(tert-butylsulfonyl)-1-cyclopropylethyl]-5-(3-chlorophenyl)-6-(4-chlorophenyl)-3-methyl-2-oxopiperidin-3-yl]methyl}pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C33 2U5 sing 1 n n C32 C14 2U5 sing 2 n n C33 C14 2U5 sing 3 n n CL2 C19 2U5 sing 4 n n C14 C13 2U5 sing 5 n n C18 C19 2U5 doub 6 n y C18 C17 2U5 sing 7 n y C19 C20 2U5 sing 8 n y C17 C6 2U5 doub 9 n y C13 C15 2U5 sing 10 n n C13 N1 2U5 sing 11 n n C20 C21 2U5 doub 12 n y O1 C5 2U5 doub 13 n n C6 C21 2U5 sing 14 n y C6 C1 2U5 sing 15 n n C15 S1 2U5 sing 16 n n N1 C5 2U5 sing 17 n n N1 C1 2U5 sing 18 n n C5 C4 2U5 sing 19 n n C16 C4 2U5 sing 20 n n C16 C26 2U5 sing 21 n n C1 C2 2U5 sing 22 n n C24 C22 2U5 sing 23 n n O5 S1 2U5 doub 24 n n C4 C34 2U5 sing 25 n n C4 C3 2U5 sing 26 n n C26 C27 2U5 doub 27 n y C26 N2 2U5 sing 28 n y C2 C7 2U5 sing 29 n n C2 C3 2U5 sing 30 n n C27 C28 2U5 sing 31 n y S1 C22 2U5 sing 32 n n S1 O4 2U5 doub 33 n n C12 C7 2U5 doub 34 n y C12 C11 2U5 sing 35 n y CL1 C11 2U5 sing 36 n n C23 C22 2U5 sing 37 n n N2 C30 2U5 doub 38 n y C22 C25 2U5 sing 39 n n C28 C29 2U5 doub 40 n y C7 C8 2U5 sing 41 n y C11 C10 2U5 doub 42 n y C30 C29 2U5 sing 43 n y C29 C31 2U5 sing 44 n n C8 C9 2U5 doub 45 n y C31 O2 2U5 doub 46 n n C31 O3 2U5 sing 47 n n C10 C9 2U5 sing 48 n y C12 H1 2U5 sing 49 n n C10 H2 2U5 sing 50 n n C9 H3 2U5 sing 51 n n C8 H4 2U5 sing 52 n n C2 H5 2U5 sing 53 n n C3 H6 2U5 sing 54 n n C3 H7 2U5 sing 55 n n C16 H8 2U5 sing 56 n n C16 H9 2U5 sing 57 n n C27 H10 2U5 sing 58 n n C28 H11 2U5 sing 59 n n O3 H12 2U5 sing 60 n n C30 H13 2U5 sing 61 n n C34 H14 2U5 sing 62 n n C34 H15 2U5 sing 63 n n C34 H16 2U5 sing 64 n n C13 H17 2U5 sing 65 n n C14 H18 2U5 sing 66 n n C32 H19 2U5 sing 67 n n C32 H20 2U5 sing 68 n n C33 H21 2U5 sing 69 n n C33 H22 2U5 sing 70 n n C15 H23 2U5 sing 71 n n C15 H24 2U5 sing 72 n n C24 H25 2U5 sing 73 n n C24 H26 2U5 sing 74 n n C24 H27 2U5 sing 75 n n C25 H28 2U5 sing 76 n n C25 H29 2U5 sing 77 n n C25 H30 2U5 sing 78 n n C23 H31 2U5 sing 79 n n C23 H32 2U5 sing 80 n n C23 H33 2U5 sing 81 n n C1 H34 2U5 sing 82 n n C17 H35 2U5 sing 83 n n C18 H36 2U5 sing 84 n n C20 H37 2U5 sing 85 n n C21 H38 2U5 sing 86 n n # _atom_sites.entry_id 4OGN _atom_sites.fract_transf_matrix[1][1] 0.02197 _atom_sites.fract_transf_matrix[1][2] 0.012684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2U5 A 1 201 1 2U5 UNL . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 27 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 32 HOH HOH . E 4 HOH A 33 333 33 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 35 HOH HOH . E 4 HOH A 36 336 36 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 43 HOH HOH . E 4 HOH A 44 344 44 HOH HOH . E 4 HOH A 45 345 45 HOH HOH . E 4 HOH A 46 346 46 HOH HOH . E 4 HOH A 47 347 47 HOH HOH . E 4 HOH A 48 348 48 HOH HOH . E 4 HOH A 49 349 49 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 51 HOH HOH . E 4 HOH A 52 352 52 HOH HOH . E 4 HOH A 53 353 53 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 55 HOH HOH . E 4 HOH A 56 356 56 HOH HOH . E 4 HOH A 57 357 57 HOH HOH . E 4 HOH A 58 358 58 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 60 HOH HOH . E 4 HOH A 61 361 61 HOH HOH . E 4 HOH A 62 362 62 HOH HOH . E 4 HOH A 63 363 63 HOH HOH . E 4 HOH A 64 364 64 HOH HOH . E 4 HOH A 65 365 65 HOH HOH . E 4 HOH A 66 366 66 HOH HOH . E 4 HOH A 67 367 67 HOH HOH . E 4 HOH A 68 368 68 HOH HOH . E 4 HOH A 69 369 69 HOH HOH . E 4 HOH A 70 370 70 HOH HOH . E 4 HOH A 71 371 71 HOH HOH . E 4 HOH A 72 372 72 HOH HOH . E 4 HOH A 73 373 73 HOH HOH . E 4 HOH A 74 374 74 HOH HOH . E 4 HOH A 75 375 75 HOH HOH . E 4 HOH A 76 376 76 HOH HOH . E 4 HOH A 77 377 77 HOH HOH . E 4 HOH A 78 378 78 HOH HOH . E 4 HOH A 79 379 79 HOH HOH . E 4 HOH A 80 380 80 HOH HOH . E 4 HOH A 81 381 81 HOH HOH . E 4 HOH A 82 382 82 HOH HOH . E 4 HOH A 83 383 83 HOH HOH . E 4 HOH A 84 384 84 HOH HOH . E 4 HOH A 85 385 85 HOH HOH . E 4 HOH A 86 386 86 HOH HOH . E 4 HOH A 87 387 87 HOH HOH . E 4 HOH A 88 388 88 HOH HOH . E 4 HOH A 89 389 89 HOH HOH . E 4 HOH A 90 390 90 HOH HOH . E 4 HOH A 91 391 91 HOH HOH . E 4 HOH A 92 392 92 HOH HOH . E 4 HOH A 93 393 93 HOH HOH . E 4 HOH A 94 394 94 HOH HOH . E 4 HOH A 95 395 95 HOH HOH . E 4 HOH A 96 396 96 HOH HOH . E 4 HOH A 97 397 97 HOH HOH . E 4 HOH A 98 398 98 HOH HOH . E 4 HOH A 99 399 99 HOH HOH . E 4 HOH A 100 400 100 HOH HOH . E 4 HOH A 101 401 101 HOH HOH . E 4 HOH A 102 402 102 HOH HOH . E 4 HOH A 103 403 103 HOH HOH . E 4 HOH A 104 404 104 HOH HOH . E 4 HOH A 105 405 105 HOH HOH . E 4 HOH A 106 406 106 HOH HOH . E 4 HOH A 107 407 107 HOH HOH . E 4 HOH A 108 408 108 HOH HOH . E 4 HOH A 109 409 109 HOH HOH . E 4 HOH A 110 410 110 HOH HOH . E 4 HOH A 111 411 111 HOH HOH . E 4 HOH A 112 412 112 HOH HOH . E 4 HOH A 113 413 113 HOH HOH . E 4 HOH A 114 414 114 HOH HOH . E 4 HOH A 115 415 115 HOH HOH . E 4 HOH A 116 416 116 HOH HOH . E 4 HOH A 117 417 117 HOH HOH . E 4 HOH A 118 418 118 HOH HOH . E 4 HOH A 119 419 119 HOH HOH . E 4 HOH A 120 420 120 HOH HOH . E 4 HOH A 121 421 121 HOH HOH . E 4 HOH A 122 422 122 HOH HOH . E 4 HOH A 123 423 123 HOH HOH . E 4 HOH A 124 424 124 HOH HOH . E 4 HOH A 125 425 125 HOH HOH . E 4 HOH A 126 426 126 HOH HOH . E 4 HOH A 127 427 127 HOH HOH . E 4 HOH A 128 428 128 HOH HOH . E 4 HOH A 129 429 129 HOH HOH . E 4 HOH A 130 430 130 HOH HOH . E 4 HOH A 131 431 131 HOH HOH . E 4 HOH A 132 432 132 HOH HOH . E 4 HOH A 133 433 133 HOH HOH . E 4 HOH A 134 434 134 HOH HOH . E 4 HOH A 135 435 135 HOH HOH . E 4 HOH A 136 436 136 HOH HOH . E 4 HOH A 137 437 137 HOH HOH . E 4 HOH A 138 438 138 HOH HOH . E 4 HOH A 139 439 139 HOH HOH . E 4 HOH A 140 440 140 HOH HOH . E 4 HOH A 141 441 141 HOH HOH . E 4 HOH A 142 442 142 HOH HOH . E 4 HOH A 143 443 143 HOH HOH . E 4 HOH A 144 444 144 HOH HOH . E 4 HOH A 145 445 145 HOH HOH . E 4 HOH A 146 446 146 HOH HOH . E 4 HOH A 147 447 147 HOH HOH . E 4 HOH A 148 448 148 HOH HOH . E 4 HOH A 149 449 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 2U5 . . . B 2 12.566 -24.166 -2.624 1 11.34 ? C12 2U5 201 A 1 HETATM 2 C C11 2U5 . . . B 2 13.522 -23.49 -1.893 1 10.22 ? C11 2U5 201 A 1 HETATM 3 CL CL1 2U5 . . . B 2 15.188 -23.373 -2.506 1 13.57 ? CL1 2U5 201 A 1 HETATM 4 C C10 2U5 . . . B 2 13.25 -22.88 -0.692 1 13.79 ? C10 2U5 201 A 1 HETATM 5 C C9 2U5 . . . B 2 11.917 -22.957 -0.169 1 13.45 ? C9 2U5 201 A 1 HETATM 6 C C8 2U5 . . . B 2 10.924 -23.64 -0.926 1 14.34 ? C8 2U5 201 A 1 HETATM 7 C C7 2U5 . . . B 2 11.21 -24.237 -2.152 1 13.68 ? C7 2U5 201 A 1 HETATM 8 C C2 2U5 . . . B 2 10.109 -24.974 -2.986 1 11.86 ? C2 2U5 201 A 1 HETATM 9 C C3 2U5 . . . B 2 9.149 -25.887 -2.126 1 13.31 ? C3 2U5 201 A 1 HETATM 10 C C4 2U5 . . . B 2 8.201 -26.694 -3.06 1 10.84 ? C4 2U5 201 A 1 HETATM 11 C C16 2U5 . . . B 2 8.764 -27.911 -3.787 1 15.12 ? C16 2U5 201 A 1 HETATM 12 C C26 2U5 . . . B 2 9.159 -29.141 -2.988 1 14.16 ? C26 2U5 201 A 1 HETATM 13 C C27 2U5 . . . B 2 8.348 -30.283 -2.971 1 15.81 ? C27 2U5 201 A 1 HETATM 14 C C28 2U5 . . . B 2 8.72 -31.427 -2.251 1 17.05 ? C28 2U5 201 A 1 HETATM 15 C C29 2U5 . . . B 2 9.977 -31.377 -1.62 1 16.42 ? C29 2U5 201 A 1 HETATM 16 C C31 2U5 . . . B 2 10.507 -32.627 -0.845 1 30.62 ? C31 2U5 201 A 1 HETATM 17 O O3 2U5 . . . B 2 11.72 -32.64 -0.468 1 25.41 ? O3 2U5 201 A 1 HETATM 18 O O2 2U5 . . . B 2 9.749 -33.633 -0.812 1 27.39 ? O2 2U5 201 A 1 HETATM 19 C C30 2U5 . . . B 2 10.778 -30.226 -1.716 1 15.69 ? C30 2U5 201 A 1 HETATM 20 N N2 2U5 . . . B 2 10.371 -29.146 -2.429 1 14.74 ? N2 2U5 201 A 1 HETATM 21 C C34 2U5 . . . B 2 7.006 -27.228 -2.155 1 15.44 ? C34 2U5 201 A 1 HETATM 22 C C5 2U5 . . . B 2 7.464 -25.791 -4.052 1 13.63 ? C5 2U5 201 A 1 HETATM 23 O O1 2U5 . . . B 2 6.45 -26.244 -4.638 1 14.5 ? O1 2U5 201 A 1 HETATM 24 N N1 2U5 . . . B 2 7.944 -24.501 -4.302 1 14.74 ? N1 2U5 201 A 1 HETATM 25 C C13 2U5 . . . B 2 7.146 -23.529 -5.151 1 14.1 ? C13 2U5 201 A 1 HETATM 26 C C14 2U5 . . . B 2 6.942 -24.082 -6.516 1 14.21 ? C14 2U5 201 A 1 HETATM 27 C C32 2U5 . . . B 2 7.911 -23.539 -7.579 1 18.4 ? C32 2U5 201 A 1 HETATM 28 C C33 2U5 . . . B 2 6.461 -22.975 -7.506 1 17.13 ? C33 2U5 201 A 1 HETATM 29 C C15 2U5 . . . B 2 5.733 -23.252 -4.508 1 16.35 ? C15 2U5 201 A 1 HETATM 30 S S1 2U5 . . . B 2 5.88 -22.453 -2.925 1 16.44 ? S1 2U5 201 A 1 HETATM 31 O O4 2U5 . . . B 2 6.254 -23.566 -2.002 1 18.16 ? O4 2U5 201 A 1 HETATM 32 O O5 2U5 . . . B 2 6.809 -21.309 -3.084 1 20.26 ? O5 2U5 201 A 1 HETATM 33 C C22 2U5 . . . B 2 4.243 -21.826 -2.386 1 16.67 ? C22 2U5 201 A 1 HETATM 34 C C24 2U5 . . . B 2 3.822 -20.634 -3.22 1 24.2 ? C24 2U5 201 A 1 HETATM 35 C C25 2U5 . . . B 2 4.368 -21.31 -0.973 1 17.92 ? C25 2U5 201 A 1 HETATM 36 C C23 2U5 . . . B 2 3.236 -23.009 -2.435 1 20.1 ? C23 2U5 201 A 1 HETATM 37 C C1 2U5 . . . B 2 9.161 -23.912 -3.658 1 13.34 ? C1 2U5 201 A 1 HETATM 38 C C6 2U5 . . . B 2 10.044 -22.979 -4.606 1 11.53 ? C6 2U5 201 A 1 HETATM 39 C C17 2U5 . . . B 2 10.854 -23.56 -5.605 1 12.42 ? C17 2U5 201 A 1 HETATM 40 C C18 2U5 . . . B 2 11.665 -22.664 -6.385 1 12.13 ? C18 2U5 201 A 1 HETATM 41 C C19 2U5 . . . B 2 11.692 -21.311 -6.095 1 10.99 ? C19 2U5 201 A 1 HETATM 42 CL CL2 2U5 . . . B 2 12.759 -20.284 -7.079 1 15.54 ? CL2 2U5 201 A 1 HETATM 43 C C20 2U5 . . . B 2 10.885 -20.728 -5.137 1 14.03 ? C20 2U5 201 A 1 HETATM 44 C C21 2U5 . . . B 2 10.056 -21.595 -4.355 1 12.55 ? C21 2U5 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #