data_4OGQ # _model_server_result.job_id p7Fl_hweLp4MEger1AjoaA _model_server_result.datetime_utc '2024-11-22 10:15:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":101}' # _entry.id 4OGQ # _exptl.entry_id 4OGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 570.927 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OGQ _cell.length_a 159.228 _cell.length_b 159.228 _cell.length_c 365.879 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.614 137.895493 60.979833 # _struct_asym.details ? _struct_asym.entity_id 22 _struct_asym.id HA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 K CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 A SG CYS 35 A CYS 35 1_555 K CBB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? covale ? covale3 C SG CYS 66 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale4 C SG CYS 69 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 K FE HEC . A HEC 303 1_555 NA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc6 U MG CLA . B CLA 204 1_555 OA O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc7 C N TYR 45 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc8 C NE2 HIS 70 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 D SG CYS 108 D CYS 108 1_555 EA FE1 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 D ND1 HIS 110 D HIS 110 1_555 EA FE2 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 D SG CYS 126 D CYS 126 1_555 EA FE1 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 D ND1 HIS 129 D HIS 129 1_555 EA FE2 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C35 H70 O5' _chem_comp.formula_weight 570.927 _chem_comp.id 2WA _chem_comp.mon_nstd_flag . _chem_comp.name (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OGQ _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEC A 1 301 301 HEC HEM . J 9 HEC A 1 302 302 HEC HEM . K 9 HEC A 1 303 303 HEC HEM . L 10 UMQ A 1 304 304 UMQ UMQ . M 11 7PH A 1 305 309 7PH 7PH . N 12 8K6 A 1 306 312 8K6 8K6 . O 12 8K6 A 1 307 313 8K6 8K6 . P 12 8K6 A 1 308 314 8K6 8K6 . Q 13 2WM A 1 309 306 2WM 2WM . R 10 UMQ B 1 201 305 UMQ UMQ . S 12 8K6 B 1 202 311 8K6 8K6 . T 10 UMQ B 1 203 311 UMQ UMQ . U 14 CLA B 1 204 201 CLA CLA . V 15 OPC B 1 205 202 OPC OPC . W 11 7PH B 1 206 102 7PH 7PH . X 9 HEC C 1 301 301 HEC HEM . Y 16 CD C 1 302 304 CD CD . Z 11 7PH C 1 303 305 7PH 7PH . AA 10 UMQ D 1 201 308 UMQ UMQ . BA 17 MYS D 1 202 310 MYS MYS . CA 11 7PH D 1 203 303 7PH 7PH . DA 18 SQD D 1 204 201 SQD SQD . EA 19 FES D 1 205 202 FES FES . FA 20 2WD D 1 206 203 2WD 2WD . GA 21 3WM E 1 101 302 3WM 3WM . HA 22 2WA F 1 101 307 2WA 2WA . IA 23 OCT F 1 102 101 OCT OCT . JA 24 1O2 F 1 103 104 1O2 1O2 . KA 11 7PH F 1 104 103 7PH 7PH . LA 10 UMQ G 1 101 102 UMQ UMQ . MA 25 BCR G 1 102 101 BCR BCR . NA 26 HOH A 1 401 401 HOH HOH . NA 26 HOH A 2 402 402 HOH HOH . NA 26 HOH A 3 403 403 HOH HOH . NA 26 HOH A 4 404 404 HOH HOH . NA 26 HOH A 5 405 408 HOH HOH . NA 26 HOH A 6 406 409 HOH HOH . NA 26 HOH A 7 407 411 HOH HOH . NA 26 HOH A 8 408 412 HOH HOH . NA 26 HOH A 9 409 414 HOH HOH . NA 26 HOH A 10 410 416 HOH HOH . NA 26 HOH A 11 411 417 HOH HOH . NA 26 HOH A 12 412 419 HOH HOH . NA 26 HOH A 13 413 421 HOH HOH . NA 26 HOH A 14 414 423 HOH HOH . NA 26 HOH A 15 415 424 HOH HOH . NA 26 HOH A 16 416 425 HOH HOH . NA 26 HOH A 17 417 426 HOH HOH . NA 26 HOH A 18 418 310 HOH HOH . NA 26 HOH A 19 419 443 HOH HOH . NA 26 HOH A 20 420 444 HOH HOH . NA 26 HOH A 21 421 104 HOH HOH . OA 26 HOH B 1 301 407 HOH HOH . OA 26 HOH B 2 302 415 HOH HOH . OA 26 HOH B 3 303 418 HOH HOH . OA 26 HOH B 4 304 302 HOH HOH . OA 26 HOH B 5 305 303 HOH HOH . OA 26 HOH B 6 306 304 HOH HOH . OA 26 HOH B 7 307 305 HOH HOH . OA 26 HOH B 8 308 306 HOH HOH . OA 26 HOH B 9 309 307 HOH HOH . OA 26 HOH B 10 310 308 HOH HOH . OA 26 HOH B 11 311 309 HOH HOH . OA 26 HOH B 12 312 312 HOH HOH . OA 26 HOH B 13 313 315 HOH HOH . OA 26 HOH B 14 314 316 HOH HOH . OA 26 HOH B 15 315 317 HOH HOH . OA 26 HOH B 16 316 318 HOH HOH . OA 26 HOH B 17 317 319 HOH HOH . OA 26 HOH B 18 318 320 HOH HOH . OA 26 HOH B 19 319 321 HOH HOH . OA 26 HOH B 20 320 322 HOH HOH . OA 26 HOH B 21 321 417 HOH HOH . OA 26 HOH B 22 322 430 HOH HOH . OA 26 HOH B 23 323 442 HOH HOH . OA 26 HOH B 24 324 202 HOH HOH . OA 26 HOH B 25 325 205 HOH HOH . PA 26 HOH C 1 401 401 HOH HOH . PA 26 HOH C 2 402 402 HOH HOH . PA 26 HOH C 3 403 403 HOH HOH . PA 26 HOH C 4 404 404 HOH HOH . PA 26 HOH C 5 405 405 HOH HOH . PA 26 HOH C 6 406 406 HOH HOH . PA 26 HOH C 7 407 407 HOH HOH . PA 26 HOH C 8 408 408 HOH HOH . PA 26 HOH C 9 409 409 HOH HOH . PA 26 HOH C 10 410 410 HOH HOH . PA 26 HOH C 11 411 412 HOH HOH . PA 26 HOH C 12 412 414 HOH HOH . PA 26 HOH C 13 413 415 HOH HOH . PA 26 HOH C 14 414 416 HOH HOH . PA 26 HOH C 15 415 418 HOH HOH . PA 26 HOH C 16 416 419 HOH HOH . PA 26 HOH C 17 417 420 HOH HOH . PA 26 HOH C 18 418 421 HOH HOH . PA 26 HOH C 19 419 422 HOH HOH . PA 26 HOH C 20 420 423 HOH HOH . PA 26 HOH C 21 421 424 HOH HOH . PA 26 HOH C 22 422 425 HOH HOH . PA 26 HOH C 23 423 426 HOH HOH . PA 26 HOH C 24 424 427 HOH HOH . PA 26 HOH C 25 425 428 HOH HOH . PA 26 HOH C 26 426 431 HOH HOH . PA 26 HOH C 27 427 432 HOH HOH . PA 26 HOH C 28 428 433 HOH HOH . PA 26 HOH C 29 429 434 HOH HOH . PA 26 HOH C 30 430 435 HOH HOH . PA 26 HOH C 31 431 436 HOH HOH . PA 26 HOH C 32 432 437 HOH HOH . PA 26 HOH C 33 433 438 HOH HOH . PA 26 HOH C 34 434 439 HOH HOH . PA 26 HOH C 35 435 440 HOH HOH . PA 26 HOH C 36 436 441 HOH HOH . PA 26 HOH C 37 437 445 HOH HOH . PA 26 HOH C 38 438 201 HOH HOH . QA 26 HOH D 1 301 301 HOH HOH . RA 26 HOH F 1 201 101 HOH HOH . SA 26 HOH G 1 201 420 HOH HOH . SA 26 HOH G 2 202 311 HOH HOH . SA 26 HOH G 3 203 313 HOH HOH . SA 26 HOH G 4 204 314 HOH HOH . SA 26 HOH G 5 205 429 HOH HOH . SA 26 HOH G 6 206 203 HOH HOH . SA 26 HOH G 7 207 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBE 2WA . . . HA 22 -38.101 75.341 -14.949 1 110.85 ? CBE 2WA 101 F 1 HETATM 2 C CBD 2WA . . . HA 22 -39.046 74.169 -14.647 1 111.73 ? CBD 2WA 101 F 1 HETATM 3 C CBC 2WA . . . HA 22 -39.858 74.394 -13.386 1 112.66 ? CBC 2WA 101 F 1 HETATM 4 C CBB 2WA . . . HA 22 -40.763 73.238 -13.077 1 111.6 ? CBB 2WA 101 F 1 HETATM 5 C CBA 2WA . . . HA 22 -40.125 72.228 -12.11 1 107.22 ? CBA 2WA 101 F 1 HETATM 6 C CAZ 2WA . . . HA 22 -41.199 71.322 -11.403 1 125.37 ? CAZ 2WA 101 F 1 HETATM 7 C CAY 2WA . . . HA 22 -40.904 71.133 -9.86 1 139.72 ? CAY 2WA 101 F 1 HETATM 8 C CAX 2WA . . . HA 22 -42.124 70.491 -9.072 1 93.7 ? CAX 2WA 101 F 1 HETATM 9 C CAW 2WA . . . HA 22 -41.929 68.987 -8.808 1 97.35 ? CAW 2WA 101 F 1 HETATM 10 C CAV 2WA . . . HA 22 -43.04 68.147 -8.734 1 104.41 ? CAV 2WA 101 F 1 HETATM 11 C CAU 2WA . . . HA 22 -42.859 66.658 -8.461 1 104.74 ? CAU 2WA 101 F 1 HETATM 12 C CAT 2WA . . . HA 22 -44.175 65.859 -8.65 1 125.75 ? CAT 2WA 101 F 1 HETATM 13 C CAS 2WA . . . HA 22 -43.921 64.365 -8.799 1 133.97 ? CAS 2WA 101 F 1 HETATM 14 C CAR 2WA . . . HA 22 -45.153 63.613 -9.259 1 142.3 ? CAR 2WA 101 F 1 HETATM 15 C CAQ 2WA . . . HA 22 -45.847 62.862 -8.11 1 149.13 ? CAQ 2WA 101 F 1 HETATM 16 C CAP 2WA . . . HA 22 -46.405 61.512 -8.557 1 155.68 ? CAP 2WA 101 F 1 HETATM 17 C CAO 2WA . . . HA 22 -47.919 61.53 -8.706 1 164.93 ? CAO 2WA 101 F 1 HETATM 18 O OAD 2WA . . . HA 22 -48.264 62.245 -9.838 1 166.45 ? OAD 2WA 101 F 1 HETATM 19 O OAN 2WA . . . HA 22 -48.406 60.175 -8.824 1 168.68 ? OAN 2WA 101 F 1 HETATM 20 C CAM 2WA . . . HA 22 -49.33 59.803 -7.81 1 169.98 ? CAM 2WA 101 F 1 HETATM 21 C CAL 2WA . . . HA 22 -50.73 60.052 -8.295 1 175.73 ? CAL 2WA 101 F 1 HETATM 22 O OAK 2WA . . . HA 22 -50.764 59.815 -9.717 1 182.09 ? OAK 2WA 101 F 1 HETATM 23 C CBI 2WA . . . HA 22 -49.165 58.317 -7.485 1 166.78 ? CBI 2WA 101 F 1 HETATM 24 O OBJ 2WA . . . HA 22 -48.406 58.192 -6.272 1 162.92 ? OBJ 2WA 101 F 1 HETATM 25 C CBK 2WA . . . HA 22 -49.137 58.519 -5.088 1 150.86 ? CBK 2WA 101 F 1 HETATM 26 O OCC 2WA . . . HA 22 -50.509 58.472 -5.353 1 146.2 ? OCC 2WA 101 F 1 HETATM 27 C CBL 2WA . . . HA 22 -48.752 59.912 -4.624 1 139.72 ? CBL 2WA 101 F 1 HETATM 28 C CBM 2WA . . . HA 22 -48.767 60.036 -3.088 1 128.61 ? CBM 2WA 101 F 1 HETATM 29 C CBN 2WA . . . HA 22 -47.392 59.67 -2.445 1 95.92 ? CBN 2WA 101 F 1 HETATM 30 C CBO 2WA . . . HA 22 -46.306 60.765 -2.717 1 72.06 ? CBO 2WA 101 F 1 HETATM 31 C CBP 2WA . . . HA 22 -45.032 60.559 -1.833 1 94.75 ? CBP 2WA 101 F 1 HETATM 32 C CBQ 2WA . . . HA 22 -44.691 61.813 -0.98 1 74.88 ? CBQ 2WA 101 F 1 HETATM 33 C CBR 2WA . . . HA 22 -43.593 61.512 0.087 1 96.85 ? CBR 2WA 101 F 1 HETATM 34 C CBS 2WA . . . HA 22 -43.019 60.25 0.154 1 80.18 ? CBS 2WA 101 F 1 HETATM 35 C CBT 2WA . . . HA 22 -41.668 60.051 0.882 1 70.95 ? CBT 2WA 101 F 1 HETATM 36 C CBU 2WA . . . HA 22 -40.997 61.393 1.257 1 77.83 ? CBU 2WA 101 F 1 HETATM 37 C CBV 2WA . . . HA 22 -39.571 61.192 1.809 1 79.88 ? CBV 2WA 101 F 1 HETATM 38 C CBW 2WA . . . HA 22 -38.538 62.106 1.116 1 90.16 ? CBW 2WA 101 F 1 HETATM 39 C CBX 2WA . . . HA 22 -37.133 62.021 1.779 1 90.12 ? CBX 2WA 101 F 1 HETATM 40 C CBY 2WA . . . HA 22 -35.988 62.196 0.768 1 82.48 ? CBY 2WA 101 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #