data_4OGQ # _model_server_result.job_id SSCGeWTYqgo8-epcezihRg _model_server_result.datetime_utc '2024-11-22 10:02:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 4OGQ # _exptl.entry_id 4OGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OGQ _cell.length_a 159.228 _cell.length_b 159.228 _cell.length_c 365.879 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.614 137.895493 60.979833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 K N N ? 9 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 K CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 A SG CYS 35 A CYS 35 1_555 K CBB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? covale ? covale3 C SG CYS 66 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale4 C SG CYS 69 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 K FE HEC . A HEC 303 1_555 NA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc6 U MG CLA . B CLA 204 1_555 OA O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc7 C N TYR 45 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc8 C NE2 HIS 70 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 D SG CYS 108 D CYS 108 1_555 EA FE1 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 D ND1 HIS 110 D HIS 110 1_555 EA FE2 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 D SG CYS 126 D CYS 126 1_555 EA FE1 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 D ND1 HIS 129 D HIS 129 1_555 EA FE2 FES . D FES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OGQ _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEC A 1 301 301 HEC HEM . J 9 HEC A 1 302 302 HEC HEM . K 9 HEC A 1 303 303 HEC HEM . L 10 UMQ A 1 304 304 UMQ UMQ . M 11 7PH A 1 305 309 7PH 7PH . N 12 8K6 A 1 306 312 8K6 8K6 . O 12 8K6 A 1 307 313 8K6 8K6 . P 12 8K6 A 1 308 314 8K6 8K6 . Q 13 2WM A 1 309 306 2WM 2WM . R 10 UMQ B 1 201 305 UMQ UMQ . S 12 8K6 B 1 202 311 8K6 8K6 . T 10 UMQ B 1 203 311 UMQ UMQ . U 14 CLA B 1 204 201 CLA CLA . V 15 OPC B 1 205 202 OPC OPC . W 11 7PH B 1 206 102 7PH 7PH . X 9 HEC C 1 301 301 HEC HEM . Y 16 CD C 1 302 304 CD CD . Z 11 7PH C 1 303 305 7PH 7PH . AA 10 UMQ D 1 201 308 UMQ UMQ . BA 17 MYS D 1 202 310 MYS MYS . CA 11 7PH D 1 203 303 7PH 7PH . DA 18 SQD D 1 204 201 SQD SQD . EA 19 FES D 1 205 202 FES FES . FA 20 2WD D 1 206 203 2WD 2WD . GA 21 3WM E 1 101 302 3WM 3WM . HA 22 2WA F 1 101 307 2WA 2WA . IA 23 OCT F 1 102 101 OCT OCT . JA 24 1O2 F 1 103 104 1O2 1O2 . KA 11 7PH F 1 104 103 7PH 7PH . LA 10 UMQ G 1 101 102 UMQ UMQ . MA 25 BCR G 1 102 101 BCR BCR . NA 26 HOH A 1 401 401 HOH HOH . NA 26 HOH A 2 402 402 HOH HOH . NA 26 HOH A 3 403 403 HOH HOH . NA 26 HOH A 4 404 404 HOH HOH . NA 26 HOH A 5 405 408 HOH HOH . NA 26 HOH A 6 406 409 HOH HOH . NA 26 HOH A 7 407 411 HOH HOH . NA 26 HOH A 8 408 412 HOH HOH . NA 26 HOH A 9 409 414 HOH HOH . NA 26 HOH A 10 410 416 HOH HOH . NA 26 HOH A 11 411 417 HOH HOH . NA 26 HOH A 12 412 419 HOH HOH . NA 26 HOH A 13 413 421 HOH HOH . NA 26 HOH A 14 414 423 HOH HOH . NA 26 HOH A 15 415 424 HOH HOH . NA 26 HOH A 16 416 425 HOH HOH . NA 26 HOH A 17 417 426 HOH HOH . NA 26 HOH A 18 418 310 HOH HOH . NA 26 HOH A 19 419 443 HOH HOH . NA 26 HOH A 20 420 444 HOH HOH . NA 26 HOH A 21 421 104 HOH HOH . OA 26 HOH B 1 301 407 HOH HOH . OA 26 HOH B 2 302 415 HOH HOH . OA 26 HOH B 3 303 418 HOH HOH . OA 26 HOH B 4 304 302 HOH HOH . OA 26 HOH B 5 305 303 HOH HOH . OA 26 HOH B 6 306 304 HOH HOH . OA 26 HOH B 7 307 305 HOH HOH . OA 26 HOH B 8 308 306 HOH HOH . OA 26 HOH B 9 309 307 HOH HOH . OA 26 HOH B 10 310 308 HOH HOH . OA 26 HOH B 11 311 309 HOH HOH . OA 26 HOH B 12 312 312 HOH HOH . OA 26 HOH B 13 313 315 HOH HOH . OA 26 HOH B 14 314 316 HOH HOH . OA 26 HOH B 15 315 317 HOH HOH . OA 26 HOH B 16 316 318 HOH HOH . OA 26 HOH B 17 317 319 HOH HOH . OA 26 HOH B 18 318 320 HOH HOH . OA 26 HOH B 19 319 321 HOH HOH . OA 26 HOH B 20 320 322 HOH HOH . OA 26 HOH B 21 321 417 HOH HOH . OA 26 HOH B 22 322 430 HOH HOH . OA 26 HOH B 23 323 442 HOH HOH . OA 26 HOH B 24 324 202 HOH HOH . OA 26 HOH B 25 325 205 HOH HOH . PA 26 HOH C 1 401 401 HOH HOH . PA 26 HOH C 2 402 402 HOH HOH . PA 26 HOH C 3 403 403 HOH HOH . PA 26 HOH C 4 404 404 HOH HOH . PA 26 HOH C 5 405 405 HOH HOH . PA 26 HOH C 6 406 406 HOH HOH . PA 26 HOH C 7 407 407 HOH HOH . PA 26 HOH C 8 408 408 HOH HOH . PA 26 HOH C 9 409 409 HOH HOH . PA 26 HOH C 10 410 410 HOH HOH . PA 26 HOH C 11 411 412 HOH HOH . PA 26 HOH C 12 412 414 HOH HOH . PA 26 HOH C 13 413 415 HOH HOH . PA 26 HOH C 14 414 416 HOH HOH . PA 26 HOH C 15 415 418 HOH HOH . PA 26 HOH C 16 416 419 HOH HOH . PA 26 HOH C 17 417 420 HOH HOH . PA 26 HOH C 18 418 421 HOH HOH . PA 26 HOH C 19 419 422 HOH HOH . PA 26 HOH C 20 420 423 HOH HOH . PA 26 HOH C 21 421 424 HOH HOH . PA 26 HOH C 22 422 425 HOH HOH . PA 26 HOH C 23 423 426 HOH HOH . PA 26 HOH C 24 424 427 HOH HOH . PA 26 HOH C 25 425 428 HOH HOH . PA 26 HOH C 26 426 431 HOH HOH . PA 26 HOH C 27 427 432 HOH HOH . PA 26 HOH C 28 428 433 HOH HOH . PA 26 HOH C 29 429 434 HOH HOH . PA 26 HOH C 30 430 435 HOH HOH . PA 26 HOH C 31 431 436 HOH HOH . PA 26 HOH C 32 432 437 HOH HOH . PA 26 HOH C 33 433 438 HOH HOH . PA 26 HOH C 34 434 439 HOH HOH . PA 26 HOH C 35 435 440 HOH HOH . PA 26 HOH C 36 436 441 HOH HOH . PA 26 HOH C 37 437 445 HOH HOH . PA 26 HOH C 38 438 201 HOH HOH . QA 26 HOH D 1 301 301 HOH HOH . RA 26 HOH F 1 201 101 HOH HOH . SA 26 HOH G 1 201 420 HOH HOH . SA 26 HOH G 2 202 311 HOH HOH . SA 26 HOH G 3 203 313 HOH HOH . SA 26 HOH G 4 204 314 HOH HOH . SA 26 HOH G 5 205 429 HOH HOH . SA 26 HOH G 6 206 203 HOH HOH . SA 26 HOH G 7 207 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . I 9 -49.027 65.652 19.553 1 48.2 ? FE HEC 301 A 1 HETATM 2 C CHA HEC . . . I 9 -52.044 64.16 18.915 1 46.92 ? CHA HEC 301 A 1 HETATM 3 C CHB HEC . . . I 9 -50.12 66.405 22.749 1 56.12 ? CHB HEC 301 A 1 HETATM 4 C CHC HEC . . . I 9 -46.005 67.131 20.26 1 48.52 ? CHC HEC 301 A 1 HETATM 5 C CHD HEC . . . I 9 -47.828 64.735 16.468 1 52.62 ? CHD HEC 301 A 1 HETATM 6 N NA HEC . . . I 9 -50.765 65.349 20.63 1 63.77 ? NA HEC 301 A 1 HETATM 7 C C1A HEC . . . I 9 -51.889 64.69 20.172 1 45.25 ? C1A HEC 301 A 1 HETATM 8 C C2A HEC . . . I 9 -52.867 64.652 21.241 1 54.29 ? C2A HEC 301 A 1 HETATM 9 C C3A HEC . . . I 9 -52.332 65.273 22.296 1 50 ? C3A HEC 301 A 1 HETATM 10 C C4A HEC . . . I 9 -51.001 65.724 21.937 1 45.6 ? C4A HEC 301 A 1 HETATM 11 C CMA HEC . . . I 9 -53.009 65.476 23.667 1 43.82 ? CMA HEC 301 A 1 HETATM 12 C CAA HEC . . . I 9 -54.274 64.006 21.17 1 31.77 ? CAA HEC 301 A 1 HETATM 13 C CBA HEC . . . I 9 -55.252 64.923 20.436 1 35.25 ? CBA HEC 301 A 1 HETATM 14 C CGA HEC . . . I 9 -55.343 64.563 18.974 1 50.07 ? CGA HEC 301 A 1 HETATM 15 O O1A HEC . . . I 9 -55.54 65.487 18.143 1 49.53 ? O1A HEC 301 A 1 HETATM 16 O O2A HEC . . . I 9 -55.207 63.359 18.631 1 49.63 ? O2A HEC 301 A 1 HETATM 17 N NB HEC . . . I 9 -48.234 66.625 21.181 1 55.33 ? NB HEC 301 A 1 HETATM 18 C C1B HEC . . . I 9 -48.825 66.756 22.424 1 60.33 ? C1B HEC 301 A 1 HETATM 19 C C2B HEC . . . I 9 -47.848 67.331 23.329 1 47.91 ? C2B HEC 301 A 1 HETATM 20 C C3B HEC . . . I 9 -46.708 67.53 22.64 1 49.42 ? C3B HEC 301 A 1 HETATM 21 C C4B HEC . . . I 9 -46.937 67.09 21.278 1 44.67 ? C4B HEC 301 A 1 HETATM 22 C CMB HEC . . . I 9 -48.14 67.628 24.817 1 40.97 ? CMB HEC 301 A 1 HETATM 23 C CAB HEC . . . I 9 -45.346 68.12 23.099 1 41.16 ? CAB HEC 301 A 1 HETATM 24 C CBB HEC . . . I 9 -45.095 68.638 24.306 1 63.26 ? CBB HEC 301 A 1 HETATM 25 N NC HEC . . . I 9 -47.247 65.89 18.552 1 65.73 ? NC HEC 301 A 1 HETATM 26 C C1C HEC . . . I 9 -46.122 66.533 19.025 1 52.9 ? C1C HEC 301 A 1 HETATM 27 C C2C HEC . . . I 9 -45.1 66.477 17.999 1 59.74 ? C2C HEC 301 A 1 HETATM 28 C C3C HEC . . . I 9 -45.606 65.805 16.948 1 69.36 ? C3C HEC 301 A 1 HETATM 29 C C4C HEC . . . I 9 -46.966 65.435 17.282 1 52.13 ? C4C HEC 301 A 1 HETATM 30 C CMC HEC . . . I 9 -43.69 67.093 18.166 1 45.26 ? CMC HEC 301 A 1 HETATM 31 C CAC HEC . . . I 9 -44.964 65.456 15.577 1 45.38 ? CAC HEC 301 A 1 HETATM 32 C CBC HEC . . . I 9 -43.815 65.964 15.115 1 59.08 ? CBC HEC 301 A 1 HETATM 33 N ND HEC . . . I 9 -49.785 64.56 17.968 1 54.5 ? ND HEC 301 A 1 HETATM 34 C C1D HEC . . . I 9 -49.144 64.427 16.738 1 51.99 ? C1D HEC 301 A 1 HETATM 35 C C2D HEC . . . I 9 -50.089 63.916 15.773 1 51.91 ? C2D HEC 301 A 1 HETATM 36 C C3D HEC . . . I 9 -51.398 63.737 16.548 1 59.25 ? C3D HEC 301 A 1 HETATM 37 C C4D HEC . . . I 9 -51.117 64.164 17.895 1 51.97 ? C4D HEC 301 A 1 HETATM 38 C CMD HEC . . . I 9 -49.828 63.611 14.283 1 40.84 ? CMD HEC 301 A 1 HETATM 39 C CAD HEC . . . I 9 -52.754 63.235 16.02 1 48.09 ? CAD HEC 301 A 1 HETATM 40 C CBD HEC . . . I 9 -53.314 64.304 15.089 1 58.43 ? CBD HEC 301 A 1 HETATM 41 C CGD HEC . . . I 9 -54.79 64.092 14.901 1 66.52 ? CGD HEC 301 A 1 HETATM 42 O O1D HEC . . . I 9 -55.473 63.722 15.889 1 54.72 ? O1D HEC 301 A 1 HETATM 43 O O2D HEC . . . I 9 -55.28 64.304 13.763 1 78.02 ? O2D HEC 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #