data_4OGU # _model_server_result.job_id OunUNIWwaHzf6-V4Du6thg _model_server_result.datetime_utc '2024-10-19 19:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4OGU # _exptl.entry_id 4OGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.069 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PAMIDRONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OGU _cell.length_a 111.21 _cell.length_b 111.21 _cell.length_c 67.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 125 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 A OD1 ASP 125 A ASP 103 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O2 210 . A 210 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 B MG MG . A MG 401 1_555 F O10 210 . A 210 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc8 B MG MG . A MG 401 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc9 B MG MG . A MG 401 1_555 G O HOH . A HOH 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 B MG MG . A MG 401 1_555 G O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc11 C MG MG . A MG 402 1_555 F O9 210 . A 210 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 C MG MG . A MG 402 1_555 F O5 210 . A 210 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc13 C MG MG . A MG 402 1_555 G O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc14 C MG MG . A MG 402 1_555 G O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 C MG MG . A MG 402 1_555 G O HOH . A HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc16 D MG MG . A MG 403 1_555 F O10 210 . A 210 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc17 D MG MG . A MG 403 1_555 G O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc18 D MG MG . A MG 403 1_555 G O HOH . A HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc19 D MG MG . A MG 403 1_555 G O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C3 H11 N O7 P2' _chem_comp.formula_weight 235.069 _chem_comp.id 210 _chem_comp.mon_nstd_flag . _chem_comp.name PAMIDRONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3-AMINO-1-HYDROXY-1-PHOSPHONO-PROPYL)PHOSPHONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O2 210 sing 1 n n P1 O3 210 sing 2 n n P1 O5 210 doub 3 n n P1 C7 210 sing 4 n n O2 HO2 210 sing 5 n n O3 HO3 210 sing 6 n n C7 P8 210 sing 7 n n C7 O14 210 sing 8 n n C7 C16 210 sing 9 n n P8 O9 210 doub 10 n n P8 O10 210 sing 11 n n P8 O12 210 sing 12 n n O10 HO10 210 sing 13 n n O12 HO12 210 sing 14 n n O14 HO14 210 sing 15 n n C16 C19 210 sing 16 n n C16 H161 210 sing 17 n n C16 H162 210 sing 18 n n C19 N22 210 sing 19 n n C19 H191 210 sing 20 n n C19 H192 210 sing 21 n n N22 H221 210 sing 22 n n N22 H222 210 sing 23 n n # _atom_sites.entry_id 4OGU _atom_sites.fract_transf_matrix[1][1] 0.008992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 907 MG MG . C 2 MG A 1 402 908 MG MG . D 2 MG A 1 403 909 MG MG . E 3 IPE A 1 404 900 IPE IPE . F 4 210 A 1 405 901 210 210 . G 5 HOH A 1 501 3 HOH HOH . G 5 HOH A 2 502 4 HOH HOH . G 5 HOH A 3 503 5 HOH HOH . G 5 HOH A 4 504 6 HOH HOH . G 5 HOH A 5 505 7 HOH HOH . G 5 HOH A 6 506 8 HOH HOH . G 5 HOH A 7 507 9 HOH HOH . G 5 HOH A 8 508 10 HOH HOH . G 5 HOH A 9 509 13 HOH HOH . G 5 HOH A 10 510 14 HOH HOH . G 5 HOH A 11 511 15 HOH HOH . G 5 HOH A 12 512 16 HOH HOH . G 5 HOH A 13 513 17 HOH HOH . G 5 HOH A 14 514 18 HOH HOH . G 5 HOH A 15 515 19 HOH HOH . G 5 HOH A 16 516 20 HOH HOH . G 5 HOH A 17 517 21 HOH HOH . G 5 HOH A 18 518 22 HOH HOH . G 5 HOH A 19 519 23 HOH HOH . G 5 HOH A 20 520 24 HOH HOH . G 5 HOH A 21 521 25 HOH HOH . G 5 HOH A 22 522 26 HOH HOH . G 5 HOH A 23 523 27 HOH HOH . G 5 HOH A 24 524 28 HOH HOH . G 5 HOH A 25 525 29 HOH HOH . G 5 HOH A 26 526 30 HOH HOH . G 5 HOH A 27 527 31 HOH HOH . G 5 HOH A 28 528 32 HOH HOH . G 5 HOH A 29 529 33 HOH HOH . G 5 HOH A 30 530 34 HOH HOH . G 5 HOH A 31 531 35 HOH HOH . G 5 HOH A 32 532 36 HOH HOH . G 5 HOH A 33 533 37 HOH HOH . G 5 HOH A 34 534 38 HOH HOH . G 5 HOH A 35 535 39 HOH HOH . G 5 HOH A 36 536 40 HOH HOH . G 5 HOH A 37 537 41 HOH HOH . G 5 HOH A 38 538 44 HOH HOH . G 5 HOH A 39 539 45 HOH HOH . G 5 HOH A 40 540 46 HOH HOH . G 5 HOH A 41 541 49 HOH HOH . G 5 HOH A 42 542 51 HOH HOH . G 5 HOH A 43 543 52 HOH HOH . G 5 HOH A 44 544 53 HOH HOH . G 5 HOH A 45 545 55 HOH HOH . G 5 HOH A 46 546 56 HOH HOH . G 5 HOH A 47 547 57 HOH HOH . G 5 HOH A 48 548 58 HOH HOH . G 5 HOH A 49 549 60 HOH HOH . G 5 HOH A 50 550 62 HOH HOH . G 5 HOH A 51 551 65 HOH HOH . G 5 HOH A 52 552 66 HOH HOH . G 5 HOH A 53 553 70 HOH HOH . G 5 HOH A 54 554 73 HOH HOH . G 5 HOH A 55 555 77 HOH HOH . G 5 HOH A 56 556 78 HOH HOH . G 5 HOH A 57 557 80 HOH HOH . G 5 HOH A 58 558 83 HOH HOH . G 5 HOH A 59 559 84 HOH HOH . G 5 HOH A 60 560 87 HOH HOH . G 5 HOH A 61 561 88 HOH HOH . G 5 HOH A 62 562 90 HOH HOH . G 5 HOH A 63 563 91 HOH HOH . G 5 HOH A 64 564 93 HOH HOH . G 5 HOH A 65 565 95 HOH HOH . G 5 HOH A 66 566 96 HOH HOH . G 5 HOH A 67 567 97 HOH HOH . G 5 HOH A 68 568 102 HOH HOH . G 5 HOH A 69 569 104 HOH HOH . G 5 HOH A 70 570 105 HOH HOH . G 5 HOH A 71 571 106 HOH HOH . G 5 HOH A 72 572 109 HOH HOH . G 5 HOH A 73 573 110 HOH HOH . G 5 HOH A 74 574 114 HOH HOH . G 5 HOH A 75 575 115 HOH HOH . G 5 HOH A 76 576 118 HOH HOH . G 5 HOH A 77 577 119 HOH HOH . G 5 HOH A 78 578 124 HOH HOH . G 5 HOH A 79 579 125 HOH HOH . G 5 HOH A 80 580 126 HOH HOH . G 5 HOH A 81 581 130 HOH HOH . G 5 HOH A 82 582 131 HOH HOH . G 5 HOH A 83 583 132 HOH HOH . G 5 HOH A 84 584 136 HOH HOH . G 5 HOH A 85 585 137 HOH HOH . G 5 HOH A 86 586 139 HOH HOH . G 5 HOH A 87 587 140 HOH HOH . G 5 HOH A 88 588 141 HOH HOH . G 5 HOH A 89 589 142 HOH HOH . G 5 HOH A 90 590 143 HOH HOH . G 5 HOH A 91 591 144 HOH HOH . G 5 HOH A 92 592 145 HOH HOH . G 5 HOH A 93 593 146 HOH HOH . G 5 HOH A 94 594 147 HOH HOH . G 5 HOH A 95 595 148 HOH HOH . G 5 HOH A 96 596 149 HOH HOH . G 5 HOH A 97 597 150 HOH HOH . G 5 HOH A 98 598 151 HOH HOH . G 5 HOH A 99 599 154 HOH HOH . G 5 HOH A 100 600 155 HOH HOH . G 5 HOH A 101 601 156 HOH HOH . G 5 HOH A 102 602 157 HOH HOH . G 5 HOH A 103 603 158 HOH HOH . G 5 HOH A 104 604 159 HOH HOH . G 5 HOH A 105 605 160 HOH HOH . G 5 HOH A 106 606 161 HOH HOH . G 5 HOH A 107 607 162 HOH HOH . G 5 HOH A 108 608 163 HOH HOH . G 5 HOH A 109 609 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 210 . . . F 4 15.08 35.621 -7.636 1 44.38 ? P1 210 405 A 1 HETATM 2 O O2 210 . . . F 4 16.485 35.602 -6.982 1 45.76 ? O2 210 405 A 1 HETATM 3 O O3 210 . . . F 4 14.096 35.756 -6.519 1 40.08 ? O3 210 405 A 1 HETATM 4 O O5 210 . . . F 4 14.948 36.799 -8.671 1 40.11 ? O5 210 405 A 1 HETATM 5 C C7 210 . . . F 4 14.765 34.022 -8.546 1 47.26 ? C7 210 405 A 1 HETATM 6 P P8 210 . . . F 4 15.951 33.841 -9.891 1 48.15 ? P8 210 405 A 1 HETATM 7 O O9 210 . . . F 4 15.896 35.13 -10.81 1 48.7 ? O9 210 405 A 1 HETATM 8 O O10 210 . . . F 4 17.382 33.629 -9.29 1 44.15 ? O10 210 405 A 1 HETATM 9 O O12 210 . . . F 4 15.59 32.656 -10.751 1 43.87 ? O12 210 405 A 1 HETATM 10 O O14 210 . . . F 4 13.524 34.101 -9.131 1 48.82 ? O14 210 405 A 1 HETATM 11 C C16 210 . . . F 4 14.917 32.855 -7.595 1 46.34 ? C16 210 405 A 1 HETATM 12 C C19 210 . . . F 4 14.424 31.459 -7.963 1 47.91 ? C19 210 405 A 1 HETATM 13 N N22 210 . . . F 4 13.825 31.231 -9.302 1 47.85 ? N22 210 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #