data_4OGW # _model_server_result.job_id 6n3MZagTG1UAzUxDycIBLw _model_server_result.datetime_utc '2024-12-26 17:55:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ogw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4OGW # _exptl.entry_id 4OGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OGW _cell.length_a 49.341 _cell.length_b 64.467 _cell.length_c 73.501 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 67 1_555 A SG CYS 39 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 56 A CYS 99 1_555 A SG CYS 137 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 76 A CYS 119 1_555 A SG CYS 158 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 117 A CYS 160 1_555 A SG CYS 130 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 211 A CYS 254 1_555 A SG CYS 232 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 237 n n P O1P NMN sing 238 n n P O2P NMN sing 239 n n P O5R NMN sing 240 n n O1P H1PO NMN sing 241 n n O2P H2PO NMN sing 242 n n O5R C5R NMN sing 243 n n C5R C4R NMN sing 244 n n C5R H5R1 NMN sing 245 n n C5R H5R2 NMN sing 246 n n C4R O4R NMN sing 247 n n C4R C3R NMN sing 248 n n C4R H4RC NMN sing 249 n n O4R C1R NMN sing 250 n n C3R O3R NMN sing 251 n n C3R C2R NMN sing 252 n n C3R H3RC NMN sing 253 n n O3R H3RO NMN sing 254 n n C2R O2R NMN sing 255 n n C2R C1R NMN sing 256 n n C2R H2RC NMN sing 257 n n O2R H2RO NMN sing 258 n n C1R N1 NMN sing 259 n n C1R H1RC NMN sing 260 n n N1 C2 NMN doub 261 n y N1 C6 NMN sing 262 n y C2 C3 NMN sing 263 n y C2 HC2 NMN sing 264 n n C3 C7 NMN sing 265 n n C3 C4 NMN doub 266 n y C7 O7 NMN doub 267 n n C7 N7 NMN sing 268 n n N7 HN71 NMN sing 269 n n N7 HN72 NMN sing 270 n n C4 C5 NMN sing 271 n y C4 HC4 NMN sing 272 n n C5 C6 NMN doub 273 n y C5 HC5 NMN sing 274 n n C6 HC6 NMN sing 275 n n # _atom_sites.entry_id 4OGW _atom_sites.fract_transf_matrix[1][1] 0.020267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NMN A 1 401 1 NMN NMN . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . C 3 HOH A 59 559 59 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 63 HOH HOH . C 3 HOH A 64 564 64 HOH HOH . C 3 HOH A 65 565 65 HOH HOH . C 3 HOH A 66 566 66 HOH HOH . C 3 HOH A 67 567 67 HOH HOH . C 3 HOH A 68 568 68 HOH HOH . C 3 HOH A 69 569 69 HOH HOH . C 3 HOH A 70 570 70 HOH HOH . C 3 HOH A 71 571 71 HOH HOH . C 3 HOH A 72 572 72 HOH HOH . C 3 HOH A 73 573 73 HOH HOH . C 3 HOH A 74 574 74 HOH HOH . C 3 HOH A 75 575 75 HOH HOH . C 3 HOH A 76 576 76 HOH HOH . C 3 HOH A 77 577 77 HOH HOH . C 3 HOH A 78 578 78 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 80 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 83 HOH HOH . C 3 HOH A 84 584 84 HOH HOH . C 3 HOH A 85 585 85 HOH HOH . C 3 HOH A 86 586 86 HOH HOH . C 3 HOH A 87 587 87 HOH HOH . C 3 HOH A 88 588 88 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 90 HOH HOH . C 3 HOH A 91 591 91 HOH HOH . C 3 HOH A 92 592 92 HOH HOH . C 3 HOH A 93 593 93 HOH HOH . C 3 HOH A 94 594 94 HOH HOH . C 3 HOH A 95 595 95 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 97 HOH HOH . C 3 HOH A 98 598 98 HOH HOH . C 3 HOH A 99 599 99 HOH HOH . C 3 HOH A 100 600 100 HOH HOH . C 3 HOH A 101 601 101 HOH HOH . C 3 HOH A 102 602 102 HOH HOH . C 3 HOH A 103 603 103 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 105 HOH HOH . C 3 HOH A 106 606 106 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 108 HOH HOH . C 3 HOH A 109 609 109 HOH HOH . C 3 HOH A 110 610 110 HOH HOH . C 3 HOH A 111 611 111 HOH HOH . C 3 HOH A 112 612 112 HOH HOH . C 3 HOH A 113 613 113 HOH HOH . C 3 HOH A 114 614 114 HOH HOH . C 3 HOH A 115 615 115 HOH HOH . C 3 HOH A 116 616 116 HOH HOH . C 3 HOH A 117 617 117 HOH HOH . C 3 HOH A 118 618 118 HOH HOH . C 3 HOH A 119 619 119 HOH HOH . C 3 HOH A 120 620 120 HOH HOH . C 3 HOH A 121 621 121 HOH HOH . C 3 HOH A 122 622 122 HOH HOH . C 3 HOH A 123 623 123 HOH HOH . C 3 HOH A 124 624 124 HOH HOH . C 3 HOH A 125 625 125 HOH HOH . C 3 HOH A 126 626 126 HOH HOH . C 3 HOH A 127 627 127 HOH HOH . C 3 HOH A 128 628 128 HOH HOH . C 3 HOH A 129 629 129 HOH HOH . C 3 HOH A 130 630 130 HOH HOH . C 3 HOH A 131 631 131 HOH HOH . C 3 HOH A 132 632 132 HOH HOH . C 3 HOH A 133 633 133 HOH HOH . C 3 HOH A 134 634 134 HOH HOH . C 3 HOH A 135 635 135 HOH HOH . C 3 HOH A 136 636 136 HOH HOH . C 3 HOH A 137 637 137 HOH HOH . C 3 HOH A 138 638 138 HOH HOH . C 3 HOH A 139 639 139 HOH HOH . C 3 HOH A 140 640 140 HOH HOH . C 3 HOH A 141 641 141 HOH HOH . C 3 HOH A 142 642 142 HOH HOH . C 3 HOH A 143 643 143 HOH HOH . C 3 HOH A 144 644 144 HOH HOH . C 3 HOH A 145 645 145 HOH HOH . C 3 HOH A 146 646 146 HOH HOH . C 3 HOH A 147 647 147 HOH HOH . C 3 HOH A 148 648 148 HOH HOH . C 3 HOH A 149 649 149 HOH HOH . C 3 HOH A 150 650 150 HOH HOH . C 3 HOH A 151 651 151 HOH HOH . C 3 HOH A 152 652 152 HOH HOH . C 3 HOH A 153 653 153 HOH HOH . C 3 HOH A 154 654 154 HOH HOH . C 3 HOH A 155 655 155 HOH HOH . C 3 HOH A 156 656 156 HOH HOH . C 3 HOH A 157 657 157 HOH HOH . C 3 HOH A 158 658 158 HOH HOH . C 3 HOH A 159 659 159 HOH HOH . C 3 HOH A 160 660 160 HOH HOH . C 3 HOH A 161 661 161 HOH HOH . C 3 HOH A 162 662 162 HOH HOH . C 3 HOH A 163 663 163 HOH HOH . C 3 HOH A 164 664 164 HOH HOH . C 3 HOH A 165 665 165 HOH HOH . C 3 HOH A 166 666 166 HOH HOH . C 3 HOH A 167 667 167 HOH HOH . C 3 HOH A 168 668 168 HOH HOH . C 3 HOH A 169 669 169 HOH HOH . C 3 HOH A 170 670 170 HOH HOH . C 3 HOH A 171 671 171 HOH HOH . C 3 HOH A 172 672 172 HOH HOH . C 3 HOH A 173 673 173 HOH HOH . C 3 HOH A 174 674 174 HOH HOH . C 3 HOH A 175 675 176 HOH HOH . C 3 HOH A 176 676 177 HOH HOH . C 3 HOH A 177 677 178 HOH HOH . C 3 HOH A 178 678 179 HOH HOH . C 3 HOH A 179 679 180 HOH HOH . C 3 HOH A 180 680 181 HOH HOH . C 3 HOH A 181 681 183 HOH HOH . C 3 HOH A 182 682 184 HOH HOH . C 3 HOH A 183 683 185 HOH HOH . C 3 HOH A 184 684 186 HOH HOH . C 3 HOH A 185 685 187 HOH HOH . C 3 HOH A 186 686 188 HOH HOH . C 3 HOH A 187 687 189 HOH HOH . C 3 HOH A 188 688 190 HOH HOH . C 3 HOH A 189 689 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . B 2 -10.641 -20.483 19.384 1 17.5 ? O3P NMN 401 A 1 HETATM 2 P P NMN . . . B 2 -10.247 -20.737 17.944 1 17.06 ? P NMN 401 A 1 HETATM 3 O O1P NMN . . . B 2 -9.223 -21.829 17.74 1 18.64 ? O1P NMN 401 A 1 HETATM 4 O O2P NMN . . . B 2 -11.412 -20.825 16.988 1 17.45 ? O2P NMN 401 A 1 HETATM 5 O O5R NMN . . . B 2 -9.439 -19.375 17.548 1 17.32 ? O5R NMN 401 A 1 HETATM 6 C C5R NMN . . . B 2 -10.206 -18.183 17.554 1 15.85 ? C5R NMN 401 A 1 HETATM 7 C C4R NMN . . . B 2 -9.539 -17.081 18.357 1 15.37 ? C4R NMN 401 A 1 HETATM 8 O O4R NMN . . . B 2 -8.142 -16.946 18.078 1 15.55 ? O4R NMN 401 A 1 HETATM 9 C C3R NMN . . . B 2 -10.152 -15.784 17.924 1 14.48 ? C3R NMN 401 A 1 HETATM 10 O O3R NMN . . . B 2 -10.149 -14.919 19.051 1 13.19 ? O3R NMN 401 A 1 HETATM 11 C C2R NMN . . . B 2 -9.252 -15.315 16.804 1 14.82 ? C2R NMN 401 A 1 HETATM 12 O O2R NMN . . . B 2 -9.071 -13.91 16.853 1 14.67 ? O2R NMN 401 A 1 HETATM 13 C C1R NMN . . . B 2 -7.943 -16.068 16.968 1 14.53 ? C1R NMN 401 A 1 HETATM 14 N N1 NMN . . . B 2 -7.678 -16.905 15.79 1 14.08 ? N1 NMN 401 A 1 HETATM 15 C C2 NMN . . . B 2 -8.071 -16.523 14.575 1 14.14 ? C2 NMN 401 A 1 HETATM 16 C C3 NMN . . . B 2 -7.811 -17.337 13.496 1 14.14 ? C3 NMN 401 A 1 HETATM 17 C C7 NMN . . . B 2 -8.236 -16.95 12.15 1 13.99 ? C7 NMN 401 A 1 HETATM 18 O O7 NMN . . . B 2 -8.275 -17.798 11.273 1 14.82 ? O7 NMN 401 A 1 HETATM 19 N N7 NMN . . . B 2 -8.572 -15.63 11.992 1 13.81 ? N7 NMN 401 A 1 HETATM 20 C C4 NMN . . . B 2 -7.155 -18.539 13.654 1 14.44 ? C4 NMN 401 A 1 HETATM 21 C C5 NMN . . . B 2 -6.759 -18.907 14.92 1 14.3 ? C5 NMN 401 A 1 HETATM 22 C C6 NMN . . . B 2 -7.035 -18.061 15.972 1 14.84 ? C6 NMN 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #