data_4OHV # _model_server_result.job_id 7MfrmlMC6WFrT8LPtMpWHA _model_server_result.datetime_utc '2024-11-25 10:37:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ohv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4OHV # _exptl.entry_id 4OHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OHV _cell.length_a 100.72 _cell.length_b 100.72 _cell.length_c 40.38 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 86 A PRO 83 1_555 A N MSE 87 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 87 A MSE 84 1_555 A N VAL 88 A VAL 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ALA 96 A ALA 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 97 A MSE 94 1_555 A N GLU 98 A GLU 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C GLU 209 A GLU 206 1_555 A N MSE 210 A MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 210 A MSE 207 1_555 A N ALA 211 A ALA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C GLY 228 A GLY 225 1_555 A N MSE 229 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 229 A MSE 226 1_555 A N ILE 230 A ILE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 A C LYS 298 A LYS 295 1_555 A N MSE 299 A MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 299 A MSE 296 1_555 A N ARG 300 A ARG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C ILE 358 A ILE 355 1_555 A N MSE 359 A MSE 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C MSE 359 A MSE 356 1_555 A N GLU 360 A GLU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C THR 402 A THR 399 1_555 A N MSE 403 A MSE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 403 A MSE 400 1_555 A N SER 404 A SER 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 B O2B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 B O1G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 C MG MG . A MG 502 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 C MG MG . A MG 502 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 C MG MG . A MG 502 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 4OHV _atom_sites.fract_transf_matrix[1][1] 0.009929 _atom_sites.fract_transf_matrix[1][2] 0.005732 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP ANP . C 3 MG A 1 502 2 MG MG . D 4 2PE A 1 503 11 2PE 2PE . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 8 HOH HOH . E 5 HOH A 9 609 9 HOH HOH . E 5 HOH A 10 610 10 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 12 HOH HOH . E 5 HOH A 13 613 13 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 16 HOH HOH . E 5 HOH A 17 617 17 HOH HOH . E 5 HOH A 18 618 18 HOH HOH . E 5 HOH A 19 619 19 HOH HOH . E 5 HOH A 20 620 20 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 22 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 24 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 26 HOH HOH . E 5 HOH A 27 627 27 HOH HOH . E 5 HOH A 28 628 28 HOH HOH . E 5 HOH A 29 629 29 HOH HOH . E 5 HOH A 30 630 30 HOH HOH . E 5 HOH A 31 631 31 HOH HOH . E 5 HOH A 32 632 32 HOH HOH . E 5 HOH A 33 633 33 HOH HOH . E 5 HOH A 34 634 34 HOH HOH . E 5 HOH A 35 635 35 HOH HOH . E 5 HOH A 36 636 36 HOH HOH . E 5 HOH A 37 637 37 HOH HOH . E 5 HOH A 38 638 38 HOH HOH . E 5 HOH A 39 639 39 HOH HOH . E 5 HOH A 40 640 40 HOH HOH . E 5 HOH A 41 641 41 HOH HOH . E 5 HOH A 42 642 42 HOH HOH . E 5 HOH A 43 643 43 HOH HOH . E 5 HOH A 44 644 44 HOH HOH . E 5 HOH A 45 645 45 HOH HOH . E 5 HOH A 46 646 46 HOH HOH . E 5 HOH A 47 647 47 HOH HOH . E 5 HOH A 48 648 48 HOH HOH . E 5 HOH A 49 649 49 HOH HOH . E 5 HOH A 50 650 50 HOH HOH . E 5 HOH A 51 651 51 HOH HOH . E 5 HOH A 52 652 52 HOH HOH . E 5 HOH A 53 653 53 HOH HOH . E 5 HOH A 54 654 54 HOH HOH . E 5 HOH A 55 655 55 HOH HOH . E 5 HOH A 56 656 56 HOH HOH . E 5 HOH A 57 657 57 HOH HOH . E 5 HOH A 58 658 58 HOH HOH . E 5 HOH A 59 659 59 HOH HOH . E 5 HOH A 60 660 60 HOH HOH . E 5 HOH A 61 661 61 HOH HOH . E 5 HOH A 62 662 62 HOH HOH . E 5 HOH A 63 663 63 HOH HOH . E 5 HOH A 64 664 64 HOH HOH . E 5 HOH A 65 665 65 HOH HOH . E 5 HOH A 66 666 66 HOH HOH . E 5 HOH A 67 667 67 HOH HOH . E 5 HOH A 68 668 68 HOH HOH . E 5 HOH A 69 669 69 HOH HOH . E 5 HOH A 70 670 70 HOH HOH . E 5 HOH A 71 671 71 HOH HOH . E 5 HOH A 72 672 72 HOH HOH . E 5 HOH A 73 673 73 HOH HOH . E 5 HOH A 74 674 74 HOH HOH . E 5 HOH A 75 675 75 HOH HOH . E 5 HOH A 76 676 76 HOH HOH . E 5 HOH A 77 677 77 HOH HOH . E 5 HOH A 78 678 78 HOH HOH . E 5 HOH A 79 679 79 HOH HOH . E 5 HOH A 80 680 80 HOH HOH . E 5 HOH A 81 681 81 HOH HOH . E 5 HOH A 82 682 82 HOH HOH . E 5 HOH A 83 683 83 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 85 HOH HOH . E 5 HOH A 86 686 86 HOH HOH . E 5 HOH A 87 687 87 HOH HOH . E 5 HOH A 88 688 88 HOH HOH . E 5 HOH A 89 689 89 HOH HOH . E 5 HOH A 90 690 90 HOH HOH . E 5 HOH A 91 691 91 HOH HOH . E 5 HOH A 92 692 92 HOH HOH . E 5 HOH A 93 693 93 HOH HOH . E 5 HOH A 94 694 94 HOH HOH . E 5 HOH A 95 695 95 HOH HOH . E 5 HOH A 96 696 96 HOH HOH . E 5 HOH A 97 697 97 HOH HOH . E 5 HOH A 98 698 98 HOH HOH . E 5 HOH A 99 699 99 HOH HOH . E 5 HOH A 100 700 100 HOH HOH . E 5 HOH A 101 701 101 HOH HOH . E 5 HOH A 102 702 102 HOH HOH . E 5 HOH A 103 703 103 HOH HOH . E 5 HOH A 104 704 104 HOH HOH . E 5 HOH A 105 705 105 HOH HOH . E 5 HOH A 106 706 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 2PE . . . D 4 -16.082 10.964 -13.282 1 42.29 ? O4 2PE 503 A 1 HETATM 2 C C5 2PE . . . D 4 -15.299 12.138 -13.007 1 38.9 ? C5 2PE 503 A 1 HETATM 3 C C6 2PE . . . D 4 -15.548 12.61 -11.575 1 36.37 ? C6 2PE 503 A 1 HETATM 4 O O7 2PE . . . D 4 -14.286 12.83 -10.93 1 33.79 ? O7 2PE 503 A 1 HETATM 5 C C8 2PE . . . D 4 -14.252 12.47 -9.555 1 31.38 ? C8 2PE 503 A 1 HETATM 6 C C9 2PE . . . D 4 -12.816 12.237 -9.146 1 30.79 ? C9 2PE 503 A 1 HETATM 7 O O10 2PE . . . D 4 -12.549 10.862 -9.332 1 33.39 ? O10 2PE 503 A 1 HETATM 8 C C11 2PE . . . D 4 -11.24 10.455 -8.947 1 34.15 ? C11 2PE 503 A 1 HETATM 9 C C12 2PE . . . D 4 -10.554 9.761 -10.116 1 36.04 ? C12 2PE 503 A 1 HETATM 10 O O13 2PE . . . D 4 -11.165 8.509 -10.393 1 36.74 ? O13 2PE 503 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #