data_4OHW # _model_server_result.job_id SALMnQsQ9UQEf7I3lZLLEQ _model_server_result.datetime_utc '2024-11-29 02:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ohw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4OHW # _exptl.entry_id 4OHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OHW _cell.length_a 99.34 _cell.length_b 99.34 _cell.length_c 40.8 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 B O1B ATP . A ATP 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 B O3G ATP . A ATP 501 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc4 C MN MN . A MN 502 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc5 C MN MN . A MN 502 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 135 n n PG O2G ATP sing 136 n n PG O3G ATP sing 137 n n PG O3B ATP sing 138 n n O2G HOG2 ATP sing 139 n n O3G HOG3 ATP sing 140 n n PB O1B ATP doub 141 n n PB O2B ATP sing 142 n n PB O3B ATP sing 143 n n PB O3A ATP sing 144 n n O2B HOB2 ATP sing 145 n n PA O1A ATP doub 146 n n PA O2A ATP sing 147 n n PA O3A ATP sing 148 n n PA O5' ATP sing 149 n n O2A HOA2 ATP sing 150 n n O5' C5' ATP sing 151 n n C5' C4' ATP sing 152 n n C5' "H5'1" ATP sing 153 n n C5' "H5'2" ATP sing 154 n n C4' O4' ATP sing 155 n n C4' C3' ATP sing 156 n n C4' H4' ATP sing 157 n n O4' C1' ATP sing 158 n n C3' O3' ATP sing 159 n n C3' C2' ATP sing 160 n n C3' H3' ATP sing 161 n n O3' HO3' ATP sing 162 n n C2' O2' ATP sing 163 n n C2' C1' ATP sing 164 n n C2' H2' ATP sing 165 n n O2' HO2' ATP sing 166 n n C1' N9 ATP sing 167 n n C1' H1' ATP sing 168 n n N9 C8 ATP sing 169 n y N9 C4 ATP sing 170 n y C8 N7 ATP doub 171 n y C8 H8 ATP sing 172 n n N7 C5 ATP sing 173 n y C5 C6 ATP sing 174 n y C5 C4 ATP doub 175 n y C6 N6 ATP sing 176 n n C6 N1 ATP doub 177 n y N6 HN61 ATP sing 178 n n N6 HN62 ATP sing 179 n n N1 C2 ATP sing 180 n y C2 N3 ATP doub 181 n y C2 H2 ATP sing 182 n n N3 C4 ATP sing 183 n y # _atom_sites.entry_id 4OHW _atom_sites.fract_transf_matrix[1][1] 0.010066 _atom_sites.fract_transf_matrix[1][2] 0.005812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 501 1 ATP ATP . C 3 MN A 1 502 2 MN MN . D 4 2PE A 1 503 11 2PE 2PE . E 5 HOH A 1 601 2 HOH HOH . E 5 HOH A 2 602 3 HOH HOH . E 5 HOH A 3 603 6 HOH HOH . E 5 HOH A 4 604 7 HOH HOH . E 5 HOH A 5 605 8 HOH HOH . E 5 HOH A 6 606 9 HOH HOH . E 5 HOH A 7 607 10 HOH HOH . E 5 HOH A 8 608 11 HOH HOH . E 5 HOH A 9 609 12 HOH HOH . E 5 HOH A 10 610 13 HOH HOH . E 5 HOH A 11 611 14 HOH HOH . E 5 HOH A 12 612 15 HOH HOH . E 5 HOH A 13 613 17 HOH HOH . E 5 HOH A 14 614 18 HOH HOH . E 5 HOH A 15 615 19 HOH HOH . E 5 HOH A 16 616 20 HOH HOH . E 5 HOH A 17 617 21 HOH HOH . E 5 HOH A 18 618 22 HOH HOH . E 5 HOH A 19 619 23 HOH HOH . E 5 HOH A 20 620 24 HOH HOH . E 5 HOH A 21 621 25 HOH HOH . E 5 HOH A 22 622 27 HOH HOH . E 5 HOH A 23 623 29 HOH HOH . E 5 HOH A 24 624 30 HOH HOH . E 5 HOH A 25 625 32 HOH HOH . E 5 HOH A 26 626 33 HOH HOH . E 5 HOH A 27 627 34 HOH HOH . E 5 HOH A 28 628 35 HOH HOH . E 5 HOH A 29 629 36 HOH HOH . E 5 HOH A 30 630 37 HOH HOH . E 5 HOH A 31 631 38 HOH HOH . E 5 HOH A 32 632 39 HOH HOH . E 5 HOH A 33 633 40 HOH HOH . E 5 HOH A 34 634 41 HOH HOH . E 5 HOH A 35 635 42 HOH HOH . E 5 HOH A 36 636 43 HOH HOH . E 5 HOH A 37 637 45 HOH HOH . E 5 HOH A 38 638 46 HOH HOH . E 5 HOH A 39 639 47 HOH HOH . E 5 HOH A 40 640 49 HOH HOH . E 5 HOH A 41 641 51 HOH HOH . E 5 HOH A 42 642 53 HOH HOH . E 5 HOH A 43 643 54 HOH HOH . E 5 HOH A 44 644 56 HOH HOH . E 5 HOH A 45 645 57 HOH HOH . E 5 HOH A 46 646 58 HOH HOH . E 5 HOH A 47 647 59 HOH HOH . E 5 HOH A 48 648 60 HOH HOH . E 5 HOH A 49 649 61 HOH HOH . E 5 HOH A 50 650 62 HOH HOH . E 5 HOH A 51 651 63 HOH HOH . E 5 HOH A 52 652 64 HOH HOH . E 5 HOH A 53 653 65 HOH HOH . E 5 HOH A 54 654 66 HOH HOH . E 5 HOH A 55 655 67 HOH HOH . E 5 HOH A 56 656 68 HOH HOH . E 5 HOH A 57 657 69 HOH HOH . E 5 HOH A 58 658 70 HOH HOH . E 5 HOH A 59 659 71 HOH HOH . E 5 HOH A 60 660 72 HOH HOH . E 5 HOH A 61 661 73 HOH HOH . E 5 HOH A 62 662 75 HOH HOH . E 5 HOH A 63 663 76 HOH HOH . E 5 HOH A 64 664 77 HOH HOH . E 5 HOH A 65 665 78 HOH HOH . E 5 HOH A 66 666 79 HOH HOH . E 5 HOH A 67 667 80 HOH HOH . E 5 HOH A 68 668 81 HOH HOH . E 5 HOH A 69 669 82 HOH HOH . E 5 HOH A 70 670 83 HOH HOH . E 5 HOH A 71 671 84 HOH HOH . E 5 HOH A 72 672 85 HOH HOH . E 5 HOH A 73 673 87 HOH HOH . E 5 HOH A 74 674 90 HOH HOH . E 5 HOH A 75 675 92 HOH HOH . E 5 HOH A 76 676 94 HOH HOH . E 5 HOH A 77 677 95 HOH HOH . E 5 HOH A 78 678 96 HOH HOH . E 5 HOH A 79 679 97 HOH HOH . E 5 HOH A 80 680 99 HOH HOH . E 5 HOH A 81 681 101 HOH HOH . E 5 HOH A 82 682 104 HOH HOH . E 5 HOH A 83 683 105 HOH HOH . E 5 HOH A 84 684 106 HOH HOH . E 5 HOH A 85 685 107 HOH HOH . E 5 HOH A 86 686 108 HOH HOH . E 5 HOH A 87 687 109 HOH HOH . E 5 HOH A 88 688 110 HOH HOH . E 5 HOH A 89 689 111 HOH HOH . E 5 HOH A 90 690 113 HOH HOH . E 5 HOH A 91 691 114 HOH HOH . E 5 HOH A 92 692 115 HOH HOH . E 5 HOH A 93 693 116 HOH HOH . E 5 HOH A 94 694 117 HOH HOH . E 5 HOH A 95 695 118 HOH HOH . E 5 HOH A 96 696 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -9.224 24.177 11.009 1 42.11 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . B 2 -8.651 25.568 10.874 1 42.42 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . B 2 -8.614 23.366 12.121 1 42.12 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . B 2 -10.733 24.117 10.967 1 41.7 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . B 2 -9.378 22.096 9.092 1 39.33 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . B 2 -10.417 22.447 8.059 1 39.69 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . B 2 -9.759 21.2 10.241 1 40.04 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . B 2 -8.713 23.449 9.661 1 40.86 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . B 2 -7.643 21.858 6.878 1 37.88 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . B 2 -7.539 23.362 6.815 1 38.48 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . B 2 -8.479 21.126 5.864 1 37.4 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . B 2 -8.128 21.42 8.35 1 39.2 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . B 2 -6.164 21.228 6.886 1 37.38 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . B 2 -5.151 21.761 7.741 1 36.52 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . B 2 -3.789 21.672 7.056 1 35.85 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . B 2 -3.437 20.297 6.86 1 35.13 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . B 2 -3.782 22.34 5.687 1 35.29 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . B 2 -2.587 23.117 5.558 1 35.86 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . B 2 -3.776 21.19 4.697 1 35.02 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . B 2 -3.031 21.489 3.511 1 35.2 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . B 2 -3.142 20.053 5.481 1 34.37 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . B 2 -3.674 18.734 5.062 1 34.16 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . B 2 -4.965 18.349 5.042 1 33.99 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . B 2 -5.087 17.07 4.605 1 33.97 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . B 2 -3.85 16.619 4.338 1 34.01 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . B 2 -3.251 15.357 3.842 1 33.79 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . B 2 -4.022 14.289 3.533 1 33.96 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . B 2 -1.905 15.31 3.709 1 34.15 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . B 2 -1.112 16.358 4.006 1 33.94 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . B 2 -1.588 17.532 4.459 1 33.89 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . B 2 -2.92 17.72 4.642 1 34.09 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #