data_4OHX # _model_server_result.job_id mpIrBjfcH-RWq-QXnR9sZw _model_server_result.datetime_utc '2024-11-25 10:55:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ohx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4OHX # _exptl.entry_id 4OHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OHX _cell.length_a 98.91 _cell.length_b 98.91 _cell.length_c 42.81 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 B O2B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc3 C MG MG . A MG 502 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 C MG MG . A MG 502 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 C MG MG . A MG 502 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 C MG MG . A MG 502 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 66 n n PB O2B ADP sing 67 n n PB O3B ADP sing 68 n n PB O3A ADP sing 69 n n O2B HOB2 ADP sing 70 n n O3B HOB3 ADP sing 71 n n PA O1A ADP doub 72 n n PA O2A ADP sing 73 n n PA O3A ADP sing 74 n n PA O5' ADP sing 75 n n O2A HOA2 ADP sing 76 n n O5' C5' ADP sing 77 n n C5' C4' ADP sing 78 n n C5' "H5'1" ADP sing 79 n n C5' "H5'2" ADP sing 80 n n C4' O4' ADP sing 81 n n C4' C3' ADP sing 82 n n C4' H4' ADP sing 83 n n O4' C1' ADP sing 84 n n C3' O3' ADP sing 85 n n C3' C2' ADP sing 86 n n C3' H3' ADP sing 87 n n O3' HO3' ADP sing 88 n n C2' O2' ADP sing 89 n n C2' C1' ADP sing 90 n n C2' H2' ADP sing 91 n n O2' HO2' ADP sing 92 n n C1' N9 ADP sing 93 n n C1' H1' ADP sing 94 n n N9 C8 ADP sing 95 n y N9 C4 ADP sing 96 n y C8 N7 ADP doub 97 n y C8 H8 ADP sing 98 n n N7 C5 ADP sing 99 n y C5 C6 ADP sing 100 n y C5 C4 ADP doub 101 n y C6 N6 ADP sing 102 n n C6 N1 ADP doub 103 n y N6 HN61 ADP sing 104 n n N6 HN62 ADP sing 105 n n N1 C2 ADP sing 106 n y C2 N3 ADP doub 107 n y C2 H2 ADP sing 108 n n N3 C4 ADP sing 109 n y # _atom_sites.entry_id 4OHX _atom_sites.fract_transf_matrix[1][1] 0.01011 _atom_sites.fract_transf_matrix[1][2] 0.005837 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1 ADP ADP . C 3 MG A 1 502 2 MG MG . D 4 2PE A 1 503 11 2PE 2PE . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 6 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 8 HOH HOH . E 5 HOH A 9 609 9 HOH HOH . E 5 HOH A 10 610 10 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 12 HOH HOH . E 5 HOH A 13 613 13 HOH HOH . E 5 HOH A 14 614 14 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 16 HOH HOH . E 5 HOH A 17 617 17 HOH HOH . E 5 HOH A 18 618 18 HOH HOH . E 5 HOH A 19 619 19 HOH HOH . E 5 HOH A 20 620 20 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 22 HOH HOH . E 5 HOH A 23 623 23 HOH HOH . E 5 HOH A 24 624 24 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 26 HOH HOH . E 5 HOH A 27 627 27 HOH HOH . E 5 HOH A 28 628 28 HOH HOH . E 5 HOH A 29 629 29 HOH HOH . E 5 HOH A 30 630 30 HOH HOH . E 5 HOH A 31 631 31 HOH HOH . E 5 HOH A 32 632 32 HOH HOH . E 5 HOH A 33 633 33 HOH HOH . E 5 HOH A 34 634 34 HOH HOH . E 5 HOH A 35 635 35 HOH HOH . E 5 HOH A 36 636 36 HOH HOH . E 5 HOH A 37 637 37 HOH HOH . E 5 HOH A 38 638 38 HOH HOH . E 5 HOH A 39 639 39 HOH HOH . E 5 HOH A 40 640 40 HOH HOH . E 5 HOH A 41 641 41 HOH HOH . E 5 HOH A 42 642 42 HOH HOH . E 5 HOH A 43 643 43 HOH HOH . E 5 HOH A 44 644 44 HOH HOH . E 5 HOH A 45 645 45 HOH HOH . E 5 HOH A 46 646 46 HOH HOH . E 5 HOH A 47 647 47 HOH HOH . E 5 HOH A 48 648 48 HOH HOH . E 5 HOH A 49 649 49 HOH HOH . E 5 HOH A 50 650 50 HOH HOH . E 5 HOH A 51 651 51 HOH HOH . E 5 HOH A 52 652 52 HOH HOH . E 5 HOH A 53 653 53 HOH HOH . E 5 HOH A 54 654 54 HOH HOH . E 5 HOH A 55 655 55 HOH HOH . E 5 HOH A 56 656 56 HOH HOH . E 5 HOH A 57 657 57 HOH HOH . E 5 HOH A 58 658 58 HOH HOH . E 5 HOH A 59 659 59 HOH HOH . E 5 HOH A 60 660 60 HOH HOH . E 5 HOH A 61 661 61 HOH HOH . E 5 HOH A 62 662 62 HOH HOH . E 5 HOH A 63 663 63 HOH HOH . E 5 HOH A 64 664 64 HOH HOH . E 5 HOH A 65 665 65 HOH HOH . E 5 HOH A 66 666 66 HOH HOH . E 5 HOH A 67 667 67 HOH HOH . E 5 HOH A 68 668 68 HOH HOH . E 5 HOH A 69 669 69 HOH HOH . E 5 HOH A 70 670 70 HOH HOH . E 5 HOH A 71 671 71 HOH HOH . E 5 HOH A 72 672 72 HOH HOH . E 5 HOH A 73 673 73 HOH HOH . E 5 HOH A 74 674 74 HOH HOH . E 5 HOH A 75 675 75 HOH HOH . E 5 HOH A 76 676 76 HOH HOH . E 5 HOH A 77 677 77 HOH HOH . E 5 HOH A 78 678 78 HOH HOH . E 5 HOH A 79 679 79 HOH HOH . E 5 HOH A 80 680 80 HOH HOH . E 5 HOH A 81 681 81 HOH HOH . E 5 HOH A 82 682 82 HOH HOH . E 5 HOH A 83 683 83 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 85 HOH HOH . E 5 HOH A 86 686 86 HOH HOH . E 5 HOH A 87 687 87 HOH HOH . E 5 HOH A 88 688 88 HOH HOH . E 5 HOH A 89 689 89 HOH HOH . E 5 HOH A 90 690 90 HOH HOH . E 5 HOH A 91 691 91 HOH HOH . E 5 HOH A 92 692 92 HOH HOH . E 5 HOH A 93 693 93 HOH HOH . E 5 HOH A 94 694 94 HOH HOH . E 5 HOH A 95 695 95 HOH HOH . E 5 HOH A 96 696 96 HOH HOH . E 5 HOH A 97 697 97 HOH HOH . E 5 HOH A 98 698 98 HOH HOH . E 5 HOH A 99 699 99 HOH HOH . E 5 HOH A 100 700 100 HOH HOH . E 5 HOH A 101 701 101 HOH HOH . E 5 HOH A 102 702 102 HOH HOH . E 5 HOH A 103 703 103 HOH HOH . E 5 HOH A 104 704 104 HOH HOH . E 5 HOH A 105 705 105 HOH HOH . E 5 HOH A 106 706 106 HOH HOH . E 5 HOH A 107 707 107 HOH HOH . E 5 HOH A 108 708 108 HOH HOH . E 5 HOH A 109 709 109 HOH HOH . E 5 HOH A 110 710 110 HOH HOH . E 5 HOH A 111 711 111 HOH HOH . E 5 HOH A 112 712 112 HOH HOH . E 5 HOH A 113 713 113 HOH HOH . E 5 HOH A 114 714 114 HOH HOH . E 5 HOH A 115 715 115 HOH HOH . E 5 HOH A 116 716 116 HOH HOH . E 5 HOH A 117 717 117 HOH HOH . E 5 HOH A 118 718 118 HOH HOH . E 5 HOH A 119 719 119 HOH HOH . E 5 HOH A 120 720 120 HOH HOH . E 5 HOH A 121 721 121 HOH HOH . E 5 HOH A 122 722 122 HOH HOH . E 5 HOH A 123 723 123 HOH HOH . E 5 HOH A 124 724 124 HOH HOH . E 5 HOH A 125 725 125 HOH HOH . E 5 HOH A 126 726 126 HOH HOH . E 5 HOH A 127 727 127 HOH HOH . E 5 HOH A 128 728 128 HOH HOH . E 5 HOH A 129 729 129 HOH HOH . E 5 HOH A 130 730 130 HOH HOH . E 5 HOH A 131 731 131 HOH HOH . E 5 HOH A 132 732 132 HOH HOH . E 5 HOH A 133 733 133 HOH HOH . E 5 HOH A 134 734 134 HOH HOH . E 5 HOH A 135 735 135 HOH HOH . E 5 HOH A 136 736 136 HOH HOH . E 5 HOH A 137 737 137 HOH HOH . E 5 HOH A 138 738 138 HOH HOH . E 5 HOH A 139 739 139 HOH HOH . E 5 HOH A 140 740 140 HOH HOH . E 5 HOH A 141 741 141 HOH HOH . E 5 HOH A 142 742 142 HOH HOH . E 5 HOH A 143 743 143 HOH HOH . E 5 HOH A 144 744 144 HOH HOH . E 5 HOH A 145 745 145 HOH HOH . E 5 HOH A 146 746 146 HOH HOH . E 5 HOH A 147 747 147 HOH HOH . E 5 HOH A 148 748 148 HOH HOH . E 5 HOH A 149 749 149 HOH HOH . E 5 HOH A 150 750 150 HOH HOH . E 5 HOH A 151 751 151 HOH HOH . E 5 HOH A 152 752 152 HOH HOH . E 5 HOH A 153 753 153 HOH HOH . E 5 HOH A 154 754 154 HOH HOH . E 5 HOH A 155 755 155 HOH HOH . E 5 HOH A 156 756 156 HOH HOH . E 5 HOH A 157 757 157 HOH HOH . E 5 HOH A 158 758 158 HOH HOH . E 5 HOH A 159 759 159 HOH HOH . E 5 HOH A 160 760 160 HOH HOH . E 5 HOH A 161 761 161 HOH HOH . E 5 HOH A 162 762 162 HOH HOH . E 5 HOH A 163 763 163 HOH HOH . E 5 HOH A 164 764 164 HOH HOH . E 5 HOH A 165 765 165 HOH HOH . E 5 HOH A 166 766 166 HOH HOH . E 5 HOH A 167 767 167 HOH HOH . E 5 HOH A 168 768 168 HOH HOH . E 5 HOH A 169 769 169 HOH HOH . E 5 HOH A 170 770 170 HOH HOH . E 5 HOH A 171 771 171 HOH HOH . E 5 HOH A 172 772 172 HOH HOH . E 5 HOH A 173 773 173 HOH HOH . E 5 HOH A 174 774 174 HOH HOH . E 5 HOH A 175 775 175 HOH HOH . E 5 HOH A 176 776 176 HOH HOH . E 5 HOH A 177 777 177 HOH HOH . E 5 HOH A 178 778 178 HOH HOH . E 5 HOH A 179 779 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -9.517 21.713 9.81 1 23.99 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . B 2 -8.956 22.555 10.935 1 27.62 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . B 2 -10.285 22.446 8.77 1 21.02 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . B 2 -10.213 20.467 10.339 1 20.94 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . B 2 -7.617 21.581 7.549 1 24.34 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . B 2 -8.405 20.941 6.443 1 22.63 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . B 2 -7.378 23.073 7.462 1 24.9 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . B 2 -8.194 21.178 9.028 1 23.45 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . B 2 -6.215 20.798 7.523 1 25.67 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . B 2 -5.168 21.131 8.446 1 26.83 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . B 2 -3.832 21.157 7.705 1 27.82 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . B 2 -3.489 19.819 7.304 1 26.08 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . B 2 -3.863 21.985 6.404 1 26.78 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . B 2 -2.606 22.608 6.205 1 27.12 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . B 2 -3.998 20.963 5.311 1 26.13 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . B 2 -3.467 21.386 4.04 1 26.72 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . B 2 -3.24 19.795 5.901 1 26.11 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . B 2 -3.693 18.497 5.359 1 26.37 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . B 2 -4.96 18.077 5.216 1 25.68 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . B 2 -4.985 16.818 4.731 1 24.57 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . B 2 -3.707 16.453 4.564 1 24.91 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . B 2 -3.02 15.26 4.078 1 25.2 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . B 2 -3.727 14.199 3.643 1 25.25 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . B 2 -1.683 15.281 4.072 1 26.43 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . B 2 -0.953 16.32 4.483 1 26.92 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . B 2 -1.511 17.446 4.941 1 27.58 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . B 2 -2.863 17.551 4.991 1 24.47 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #