data_4OHY # _model_server_result.job_id 9T_EtFdWQ7g3oHOlxtuPgA _model_server_result.datetime_utc '2024-10-10 10:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ohy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4OHY # _exptl.entry_id 4OHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OHY _cell.length_a 100.434 _cell.length_b 100.434 _cell.length_c 40.333 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 C O2B ANP . A ANP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 C O3G ANP . A ANP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 D MG MG . A MG 502 1_555 F O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 D MG MG . A MG 502 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 D MG MG . A MG 502 1_555 F O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 78 n n PG O2G ANP sing 79 n n PG O3G ANP sing 80 n n PG N3B ANP sing 81 n n O2G HOG2 ANP sing 82 n n O3G HOG3 ANP sing 83 n n PB O1B ANP doub 84 n n PB O2B ANP sing 85 n n PB N3B ANP sing 86 n n PB O3A ANP sing 87 n n O2B HOB2 ANP sing 88 n n N3B HNB1 ANP sing 89 n n PA O1A ANP doub 90 n n PA O2A ANP sing 91 n n PA O3A ANP sing 92 n n PA O5' ANP sing 93 n n O2A HOA2 ANP sing 94 n n O5' C5' ANP sing 95 n n C5' C4' ANP sing 96 n n C5' "H5'1" ANP sing 97 n n C5' "H5'2" ANP sing 98 n n C4' O4' ANP sing 99 n n C4' C3' ANP sing 100 n n C4' H4' ANP sing 101 n n O4' C1' ANP sing 102 n n C3' O3' ANP sing 103 n n C3' C2' ANP sing 104 n n C3' H3' ANP sing 105 n n O3' HO3' ANP sing 106 n n C2' O2' ANP sing 107 n n C2' C1' ANP sing 108 n n C2' H2' ANP sing 109 n n O2' HO2' ANP sing 110 n n C1' N9 ANP sing 111 n n C1' H1' ANP sing 112 n n N9 C8 ANP sing 113 n y N9 C4 ANP sing 114 n y C8 N7 ANP doub 115 n y C8 H8 ANP sing 116 n n N7 C5 ANP sing 117 n y C5 C6 ANP sing 118 n y C5 C4 ANP doub 119 n y C6 N6 ANP sing 120 n n C6 N1 ANP doub 121 n y N6 HN61 ANP sing 122 n n N6 HN62 ANP sing 123 n n N1 C2 ANP sing 124 n y C2 N3 ANP doub 125 n y C2 H2 ANP sing 126 n n N3 C4 ANP sing 127 n y # _atom_sites.entry_id 4OHY _atom_sites.fract_transf_matrix[1][1] 0.009957 _atom_sites.fract_transf_matrix[1][2] 0.005749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 501 1 ANP ANP . D 4 MG A 1 502 2 MG MG . E 5 2PE A 1 503 11 2PE 2PE . F 6 HOH A 1 601 1 HOH HOH . F 6 HOH A 2 602 2 HOH HOH . F 6 HOH A 3 603 3 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 5 HOH HOH . F 6 HOH A 6 606 6 HOH HOH . F 6 HOH A 7 607 7 HOH HOH . F 6 HOH A 8 608 8 HOH HOH . F 6 HOH A 9 609 9 HOH HOH . F 6 HOH A 10 610 10 HOH HOH . F 6 HOH A 11 611 11 HOH HOH . F 6 HOH A 12 612 12 HOH HOH . F 6 HOH A 13 613 13 HOH HOH . F 6 HOH A 14 614 14 HOH HOH . F 6 HOH A 15 615 15 HOH HOH . F 6 HOH A 16 616 16 HOH HOH . F 6 HOH A 17 617 17 HOH HOH . F 6 HOH A 18 618 18 HOH HOH . F 6 HOH A 19 619 19 HOH HOH . F 6 HOH A 20 620 20 HOH HOH . F 6 HOH A 21 621 21 HOH HOH . F 6 HOH A 22 622 22 HOH HOH . F 6 HOH A 23 623 23 HOH HOH . F 6 HOH A 24 624 24 HOH HOH . F 6 HOH A 25 625 25 HOH HOH . F 6 HOH A 26 626 26 HOH HOH . F 6 HOH A 27 627 27 HOH HOH . F 6 HOH A 28 628 28 HOH HOH . F 6 HOH A 29 629 29 HOH HOH . F 6 HOH A 30 630 30 HOH HOH . F 6 HOH A 31 631 31 HOH HOH . F 6 HOH A 32 632 32 HOH HOH . F 6 HOH A 33 633 33 HOH HOH . F 6 HOH A 34 634 34 HOH HOH . F 6 HOH A 35 635 35 HOH HOH . F 6 HOH A 36 636 36 HOH HOH . F 6 HOH A 37 637 37 HOH HOH . F 6 HOH A 38 638 38 HOH HOH . F 6 HOH A 39 639 39 HOH HOH . F 6 HOH A 40 640 40 HOH HOH . F 6 HOH A 41 641 41 HOH HOH . F 6 HOH A 42 642 42 HOH HOH . F 6 HOH A 43 643 43 HOH HOH . F 6 HOH A 44 644 44 HOH HOH . F 6 HOH A 45 645 45 HOH HOH . F 6 HOH A 46 646 46 HOH HOH . F 6 HOH A 47 647 47 HOH HOH . F 6 HOH A 48 648 48 HOH HOH . F 6 HOH A 49 649 49 HOH HOH . F 6 HOH A 50 650 50 HOH HOH . F 6 HOH A 51 651 51 HOH HOH . F 6 HOH A 52 652 52 HOH HOH . F 6 HOH A 53 653 53 HOH HOH . F 6 HOH A 54 654 54 HOH HOH . F 6 HOH A 55 655 55 HOH HOH . F 6 HOH A 56 656 56 HOH HOH . F 6 HOH A 57 657 57 HOH HOH . F 6 HOH A 58 658 58 HOH HOH . F 6 HOH A 59 659 59 HOH HOH . F 6 HOH A 60 660 60 HOH HOH . F 6 HOH A 61 661 61 HOH HOH . F 6 HOH A 62 662 62 HOH HOH . F 6 HOH A 63 663 63 HOH HOH . F 6 HOH A 64 664 64 HOH HOH . F 6 HOH A 65 665 65 HOH HOH . F 6 HOH A 66 666 66 HOH HOH . F 6 HOH A 67 667 67 HOH HOH . F 6 HOH A 68 668 68 HOH HOH . F 6 HOH A 69 669 69 HOH HOH . F 6 HOH A 70 670 70 HOH HOH . F 6 HOH A 71 671 71 HOH HOH . F 6 HOH A 72 672 72 HOH HOH . F 6 HOH A 73 673 73 HOH HOH . F 6 HOH A 74 674 74 HOH HOH . F 6 HOH A 75 675 75 HOH HOH . F 6 HOH A 76 676 76 HOH HOH . F 6 HOH A 77 677 77 HOH HOH . F 6 HOH A 78 678 78 HOH HOH . F 6 HOH A 79 679 79 HOH HOH . F 6 HOH A 80 680 80 HOH HOH . F 6 HOH A 81 681 81 HOH HOH . F 6 HOH A 82 682 82 HOH HOH . F 6 HOH A 83 683 83 HOH HOH . F 6 HOH A 84 684 84 HOH HOH . F 6 HOH A 85 685 85 HOH HOH . F 6 HOH A 86 686 86 HOH HOH . F 6 HOH A 87 687 87 HOH HOH . F 6 HOH A 88 688 88 HOH HOH . F 6 HOH A 89 689 89 HOH HOH . F 6 HOH A 90 690 90 HOH HOH . F 6 HOH A 91 691 91 HOH HOH . F 6 HOH A 92 692 92 HOH HOH . F 6 HOH A 93 693 93 HOH HOH . F 6 HOH A 94 694 94 HOH HOH . F 6 HOH A 95 695 95 HOH HOH . F 6 HOH A 96 696 96 HOH HOH . F 6 HOH A 97 697 97 HOH HOH . F 6 HOH A 98 698 98 HOH HOH . F 6 HOH A 99 699 99 HOH HOH . F 6 HOH A 100 700 100 HOH HOH . F 6 HOH A 101 701 101 HOH HOH . F 6 HOH A 102 702 102 HOH HOH . F 6 HOH A 103 703 103 HOH HOH . F 6 HOH A 104 704 104 HOH HOH . F 6 HOH A 105 705 105 HOH HOH . F 6 HOH A 106 706 106 HOH HOH . F 6 HOH A 107 707 107 HOH HOH . F 6 HOH A 108 708 108 HOH HOH . F 6 HOH A 109 709 109 HOH HOH . F 6 HOH A 110 710 110 HOH HOH . F 6 HOH A 111 711 111 HOH HOH . F 6 HOH A 112 712 112 HOH HOH . F 6 HOH A 113 713 113 HOH HOH . F 6 HOH A 114 714 114 HOH HOH . F 6 HOH A 115 715 115 HOH HOH . F 6 HOH A 116 716 116 HOH HOH . F 6 HOH A 117 717 117 HOH HOH . F 6 HOH A 118 718 118 HOH HOH . F 6 HOH A 119 719 119 HOH HOH . F 6 HOH A 120 720 120 HOH HOH . F 6 HOH A 121 721 121 HOH HOH . F 6 HOH A 122 722 122 HOH HOH . F 6 HOH A 123 723 123 HOH HOH . F 6 HOH A 124 724 124 HOH HOH . F 6 HOH A 125 725 125 HOH HOH . F 6 HOH A 126 726 126 HOH HOH . F 6 HOH A 127 727 127 HOH HOH . F 6 HOH A 128 728 128 HOH HOH . F 6 HOH A 129 729 129 HOH HOH . F 6 HOH A 130 730 130 HOH HOH . F 6 HOH A 131 731 131 HOH HOH . F 6 HOH A 132 732 133 HOH HOH . F 6 HOH A 133 733 134 HOH HOH . F 6 HOH A 134 734 135 HOH HOH . F 6 HOH A 135 735 136 HOH HOH . F 6 HOH A 136 736 138 HOH HOH . F 6 HOH A 137 737 139 HOH HOH . F 6 HOH A 138 738 140 HOH HOH . F 6 HOH A 139 739 141 HOH HOH . F 6 HOH A 140 740 142 HOH HOH . F 6 HOH A 141 741 143 HOH HOH . F 6 HOH A 142 742 144 HOH HOH . F 6 HOH A 143 743 145 HOH HOH . F 6 HOH A 144 744 146 HOH HOH . F 6 HOH A 145 745 147 HOH HOH . F 6 HOH A 146 746 148 HOH HOH . F 6 HOH A 147 747 149 HOH HOH . G 6 HOH B 1 101 132 HOH HOH . G 6 HOH B 2 102 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -9.646 24.616 11.083 1 39.93 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 3 -8.673 25.77 11.075 1 42.21 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 3 -9.936 24.093 12.452 1 40.95 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 3 -10.889 24.794 10.251 1 39.92 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 3 -9.378 22.273 9.179 1 32.01 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 3 -10.131 21.18 9.908 1 32.6 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 3 -10.263 22.958 8.169 1 31.05 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 3 -8.683 23.365 10.338 1 35.98 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 3 -7.483 22.02 7.038 1 30.93 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 3 -8.28 21.274 6.01 1 28.71 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 3 -7.351 23.531 6.963 1 31.56 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 3 -8.049 21.652 8.495 1 31.6 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 3 -5.977 21.43 7.052 1 31.39 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 3 -4.958 21.861 7.968 1 31.78 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 3 -3.572 21.843 7.307 1 32.32 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 3 -3.183 20.491 7.011 1 31.97 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 3 -3.507 22.584 5.978 1 33.89 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 3 -2.179 23.108 5.789 1 33.35 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 3 -3.709 21.492 4.954 1 31.48 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 3 -3.112 21.846 3.717 1 32.22 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 3 -2.961 20.343 5.602 1 30.41 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 3 -3.461 19.016 5.165 1 29.39 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 3 -4.739 18.601 5.133 1 29.2 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 3 -4.803 17.317 4.696 1 26.78 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 3 -3.541 16.919 4.456 1 26.22 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 3 -2.89 15.685 3.989 1 26.49 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 3 -3.648 14.605 3.672 1 25.58 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 3 -1.531 15.684 3.895 1 27.34 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 3 -0.765 16.754 4.209 1 29.1 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 3 -1.314 17.916 4.638 1 28.04 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 3 -2.66 18.036 4.775 1 26.58 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #