data_4OHZ # _model_server_result.job_id jmMUFTPmqQ9fCqCIZtMyFQ _model_server_result.datetime_utc '2024-11-25 08:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ohz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4OHZ # _exptl.entry_id 4OHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OHZ _cell.length_a 99.66 _cell.length_b 99.66 _cell.length_c 40.83 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 C O2B ADP . A ADP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 D MG MG . A MG 502 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 D MG MG . A MG 502 1_555 G O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc5 D MG MG . A MG 502 1_555 G O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 D MG MG . A MG 502 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 105 n n PB O2B ADP sing 106 n n PB O3B ADP sing 107 n n PB O3A ADP sing 108 n n O2B HOB2 ADP sing 109 n n O3B HOB3 ADP sing 110 n n PA O1A ADP doub 111 n n PA O2A ADP sing 112 n n PA O3A ADP sing 113 n n PA O5' ADP sing 114 n n O2A HOA2 ADP sing 115 n n O5' C5' ADP sing 116 n n C5' C4' ADP sing 117 n n C5' "H5'1" ADP sing 118 n n C5' "H5'2" ADP sing 119 n n C4' O4' ADP sing 120 n n C4' C3' ADP sing 121 n n C4' H4' ADP sing 122 n n O4' C1' ADP sing 123 n n C3' O3' ADP sing 124 n n C3' C2' ADP sing 125 n n C3' H3' ADP sing 126 n n O3' HO3' ADP sing 127 n n C2' O2' ADP sing 128 n n C2' C1' ADP sing 129 n n C2' H2' ADP sing 130 n n O2' HO2' ADP sing 131 n n C1' N9 ADP sing 132 n n C1' H1' ADP sing 133 n n N9 C8 ADP sing 134 n y N9 C4 ADP sing 135 n y C8 N7 ADP doub 136 n y C8 H8 ADP sing 137 n n N7 C5 ADP sing 138 n y C5 C6 ADP sing 139 n y C5 C4 ADP doub 140 n y C6 N6 ADP sing 141 n n C6 N1 ADP doub 142 n y N6 HN61 ADP sing 143 n n N6 HN62 ADP sing 144 n n N1 C2 ADP sing 145 n y C2 N3 ADP doub 146 n y C2 H2 ADP sing 147 n n N3 C4 ADP sing 148 n y # _atom_sites.entry_id 4OHZ _atom_sites.fract_transf_matrix[1][1] 0.010034 _atom_sites.fract_transf_matrix[1][2] 0.005793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 501 1 ADP ADP . D 4 MG A 1 502 2 MG MG . E 5 SAR A 1 503 10 SAR SAR . F 6 2PE A 1 504 11 2PE 2PE . G 7 HOH A 1 601 1 HOH HOH . G 7 HOH A 2 602 2 HOH HOH . G 7 HOH A 3 603 3 HOH HOH . G 7 HOH A 4 604 4 HOH HOH . G 7 HOH A 5 605 5 HOH HOH . G 7 HOH A 6 606 6 HOH HOH . G 7 HOH A 7 607 7 HOH HOH . G 7 HOH A 8 608 8 HOH HOH . G 7 HOH A 9 609 9 HOH HOH . G 7 HOH A 10 610 10 HOH HOH . G 7 HOH A 11 611 11 HOH HOH . G 7 HOH A 12 612 12 HOH HOH . G 7 HOH A 13 613 13 HOH HOH . G 7 HOH A 14 614 14 HOH HOH . G 7 HOH A 15 615 15 HOH HOH . G 7 HOH A 16 616 16 HOH HOH . G 7 HOH A 17 617 17 HOH HOH . G 7 HOH A 18 618 18 HOH HOH . G 7 HOH A 19 619 19 HOH HOH . G 7 HOH A 20 620 20 HOH HOH . G 7 HOH A 21 621 21 HOH HOH . G 7 HOH A 22 622 22 HOH HOH . G 7 HOH A 23 623 23 HOH HOH . G 7 HOH A 24 624 24 HOH HOH . G 7 HOH A 25 625 25 HOH HOH . G 7 HOH A 26 626 26 HOH HOH . G 7 HOH A 27 627 27 HOH HOH . G 7 HOH A 28 628 28 HOH HOH . G 7 HOH A 29 629 29 HOH HOH . G 7 HOH A 30 630 30 HOH HOH . G 7 HOH A 31 631 31 HOH HOH . G 7 HOH A 32 632 32 HOH HOH . G 7 HOH A 33 633 33 HOH HOH . G 7 HOH A 34 634 34 HOH HOH . G 7 HOH A 35 635 35 HOH HOH . G 7 HOH A 36 636 36 HOH HOH . G 7 HOH A 37 637 37 HOH HOH . G 7 HOH A 38 638 38 HOH HOH . G 7 HOH A 39 639 39 HOH HOH . G 7 HOH A 40 640 40 HOH HOH . G 7 HOH A 41 641 41 HOH HOH . G 7 HOH A 42 642 42 HOH HOH . G 7 HOH A 43 643 43 HOH HOH . G 7 HOH A 44 644 44 HOH HOH . G 7 HOH A 45 645 45 HOH HOH . G 7 HOH A 46 646 46 HOH HOH . G 7 HOH A 47 647 47 HOH HOH . G 7 HOH A 48 648 48 HOH HOH . G 7 HOH A 49 649 49 HOH HOH . G 7 HOH A 50 650 50 HOH HOH . G 7 HOH A 51 651 51 HOH HOH . G 7 HOH A 52 652 52 HOH HOH . G 7 HOH A 53 653 53 HOH HOH . G 7 HOH A 54 654 54 HOH HOH . G 7 HOH A 55 655 55 HOH HOH . G 7 HOH A 56 656 56 HOH HOH . G 7 HOH A 57 657 57 HOH HOH . G 7 HOH A 58 658 58 HOH HOH . G 7 HOH A 59 659 59 HOH HOH . G 7 HOH A 60 660 60 HOH HOH . G 7 HOH A 61 661 62 HOH HOH . G 7 HOH A 62 662 63 HOH HOH . G 7 HOH A 63 663 64 HOH HOH . G 7 HOH A 64 664 65 HOH HOH . G 7 HOH A 65 665 66 HOH HOH . G 7 HOH A 66 666 67 HOH HOH . G 7 HOH A 67 667 68 HOH HOH . G 7 HOH A 68 668 69 HOH HOH . G 7 HOH A 69 669 70 HOH HOH . G 7 HOH A 70 670 73 HOH HOH . G 7 HOH A 71 671 74 HOH HOH . G 7 HOH A 72 672 75 HOH HOH . G 7 HOH A 73 673 76 HOH HOH . G 7 HOH A 74 674 77 HOH HOH . G 7 HOH A 75 675 78 HOH HOH . G 7 HOH A 76 676 79 HOH HOH . G 7 HOH A 77 677 80 HOH HOH . G 7 HOH A 78 678 81 HOH HOH . G 7 HOH A 79 679 82 HOH HOH . G 7 HOH A 80 680 83 HOH HOH . G 7 HOH A 81 681 84 HOH HOH . G 7 HOH A 82 682 85 HOH HOH . H 7 HOH B 1 101 61 HOH HOH . H 7 HOH B 2 102 71 HOH HOH . H 7 HOH B 3 103 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 -9.67 21.937 9.393 1 26.69 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . C 3 -10.479 20.756 9.873 1 25.11 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . C 3 -10.316 22.786 8.317 1 27.36 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . C 3 -9.035 22.776 10.471 1 29.08 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . C 3 -7.783 21.747 7.294 1 26.08 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . C 3 -8.626 21.079 6.237 1 26.68 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . C 3 -7.577 23.234 7.272 1 27.97 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . C 3 -8.388 21.272 8.702 1 26.57 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . C 3 -6.333 21.086 7.324 1 27.94 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . C 3 -5.325 21.514 8.246 1 28.89 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . C 3 -3.977 21.522 7.537 1 29.89 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . C 3 -3.597 20.179 7.196 1 30.47 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . C 3 -4.009 22.287 6.223 1 30.47 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . C 3 -2.789 22.997 6.078 1 33.26 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . C 3 -4.059 21.23 5.149 1 31.6 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . C 3 -3.401 21.639 3.943 1 33.7 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . C 3 -3.329 20.067 5.797 1 29.73 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . C 3 -3.78 18.753 5.301 1 30.38 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . C 3 -5.049 18.308 5.176 1 30.21 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . C 3 -5.076 17.042 4.685 1 30.49 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . C 3 -3.8 16.661 4.503 1 30.53 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . C 3 -3.094 15.457 4.038 1 30.92 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . C 3 -3.758 14.363 3.635 1 31.53 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . C 3 -1.752 15.478 4.009 1 31.56 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . C 3 -1.048 16.547 4.381 1 30.78 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . C 3 -1.628 17.67 4.826 1 30.43 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . C 3 -2.961 17.783 4.915 1 30.08 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #