data_4OI0 # _model_server_result.job_id Lhz4cofk7FJScBFGtMDJcA _model_server_result.datetime_utc '2024-11-25 10:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4OI0 # _exptl.entry_id 4OI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SARCOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OI0 _cell.length_a 100.71 _cell.length_b 100.71 _cell.length_c 40.4 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc2 C O2B ADP . A ADP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc3 D MG MG . A MG 502 1_555 I O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc4 D MG MG . A MG 502 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 D MG MG . A MG 502 1_555 I O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id SAR _chem_comp.mon_nstd_flag n _chem_comp.name SARCOSINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAR sing 466 n n N CN SAR sing 467 n n N H SAR sing 468 n n CA C SAR sing 469 n n CA HA2 SAR sing 470 n n CA HA3 SAR sing 471 n n C O SAR doub 472 n n C OXT SAR sing 473 n n CN HN1 SAR sing 474 n n CN HN2 SAR sing 475 n n CN HN3 SAR sing 476 n n OXT HXT SAR sing 477 n n # _atom_sites.entry_id 4OI0 _atom_sites.fract_transf_matrix[1][1] 0.00993 _atom_sites.fract_transf_matrix[1][2] 0.005733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 501 1 ADP ADP . D 4 MG A 1 502 2 MG MG . E 5 ALF A 1 503 3 ALF ALF . F 6 SAR A 1 504 10 SAR SAR . G 6 SAR A 1 505 11 SAR SAR . H 7 2PE A 1 506 12 2PE 2PE . I 8 HOH A 1 601 1 HOH HOH . I 8 HOH A 2 602 2 HOH HOH . I 8 HOH A 3 603 3 HOH HOH . I 8 HOH A 4 604 4 HOH HOH . I 8 HOH A 5 605 5 HOH HOH . I 8 HOH A 6 606 6 HOH HOH . I 8 HOH A 7 607 7 HOH HOH . I 8 HOH A 8 608 8 HOH HOH . I 8 HOH A 9 609 9 HOH HOH . I 8 HOH A 10 610 10 HOH HOH . I 8 HOH A 11 611 12 HOH HOH . I 8 HOH A 12 612 13 HOH HOH . I 8 HOH A 13 613 14 HOH HOH . I 8 HOH A 14 614 15 HOH HOH . I 8 HOH A 15 615 16 HOH HOH . I 8 HOH A 16 616 17 HOH HOH . I 8 HOH A 17 617 18 HOH HOH . I 8 HOH A 18 618 19 HOH HOH . I 8 HOH A 19 619 20 HOH HOH . I 8 HOH A 20 620 21 HOH HOH . I 8 HOH A 21 621 22 HOH HOH . I 8 HOH A 22 622 23 HOH HOH . I 8 HOH A 23 623 24 HOH HOH . I 8 HOH A 24 624 26 HOH HOH . I 8 HOH A 25 625 27 HOH HOH . I 8 HOH A 26 626 28 HOH HOH . I 8 HOH A 27 627 29 HOH HOH . I 8 HOH A 28 628 30 HOH HOH . I 8 HOH A 29 629 31 HOH HOH . I 8 HOH A 30 630 32 HOH HOH . I 8 HOH A 31 631 33 HOH HOH . I 8 HOH A 32 632 34 HOH HOH . I 8 HOH A 33 633 35 HOH HOH . I 8 HOH A 34 634 36 HOH HOH . I 8 HOH A 35 635 37 HOH HOH . I 8 HOH A 36 636 38 HOH HOH . I 8 HOH A 37 637 39 HOH HOH . I 8 HOH A 38 638 40 HOH HOH . I 8 HOH A 39 639 41 HOH HOH . I 8 HOH A 40 640 42 HOH HOH . I 8 HOH A 41 641 43 HOH HOH . I 8 HOH A 42 642 44 HOH HOH . I 8 HOH A 43 643 45 HOH HOH . I 8 HOH A 44 644 46 HOH HOH . I 8 HOH A 45 645 47 HOH HOH . I 8 HOH A 46 646 48 HOH HOH . I 8 HOH A 47 647 49 HOH HOH . I 8 HOH A 48 648 50 HOH HOH . I 8 HOH A 49 649 51 HOH HOH . I 8 HOH A 50 650 52 HOH HOH . I 8 HOH A 51 651 53 HOH HOH . I 8 HOH A 52 652 54 HOH HOH . I 8 HOH A 53 653 55 HOH HOH . I 8 HOH A 54 654 56 HOH HOH . I 8 HOH A 55 655 57 HOH HOH . I 8 HOH A 56 656 58 HOH HOH . I 8 HOH A 57 657 59 HOH HOH . I 8 HOH A 58 658 60 HOH HOH . I 8 HOH A 59 659 61 HOH HOH . I 8 HOH A 60 660 62 HOH HOH . I 8 HOH A 61 661 63 HOH HOH . I 8 HOH A 62 662 64 HOH HOH . I 8 HOH A 63 663 65 HOH HOH . I 8 HOH A 64 664 66 HOH HOH . I 8 HOH A 65 665 67 HOH HOH . I 8 HOH A 66 666 68 HOH HOH . I 8 HOH A 67 667 69 HOH HOH . I 8 HOH A 68 668 70 HOH HOH . I 8 HOH A 69 669 71 HOH HOH . I 8 HOH A 70 670 72 HOH HOH . I 8 HOH A 71 671 73 HOH HOH . I 8 HOH A 72 672 74 HOH HOH . I 8 HOH A 73 673 75 HOH HOH . I 8 HOH A 74 674 76 HOH HOH . I 8 HOH A 75 675 77 HOH HOH . I 8 HOH A 76 676 78 HOH HOH . I 8 HOH A 77 677 79 HOH HOH . I 8 HOH A 78 678 80 HOH HOH . I 8 HOH A 79 679 81 HOH HOH . I 8 HOH A 80 680 82 HOH HOH . I 8 HOH A 81 681 83 HOH HOH . I 8 HOH A 82 682 84 HOH HOH . I 8 HOH A 83 683 85 HOH HOH . I 8 HOH A 84 684 86 HOH HOH . I 8 HOH A 85 685 87 HOH HOH . I 8 HOH A 86 686 88 HOH HOH . I 8 HOH A 87 687 89 HOH HOH . I 8 HOH A 88 688 90 HOH HOH . I 8 HOH A 89 689 91 HOH HOH . I 8 HOH A 90 690 92 HOH HOH . I 8 HOH A 91 691 93 HOH HOH . I 8 HOH A 92 692 94 HOH HOH . I 8 HOH A 93 693 95 HOH HOH . I 8 HOH A 94 694 96 HOH HOH . I 8 HOH A 95 695 97 HOH HOH . I 8 HOH A 96 696 98 HOH HOH . I 8 HOH A 97 697 99 HOH HOH . I 8 HOH A 98 698 100 HOH HOH . I 8 HOH A 99 699 101 HOH HOH . I 8 HOH A 100 700 102 HOH HOH . I 8 HOH A 101 701 103 HOH HOH . I 8 HOH A 102 702 104 HOH HOH . I 8 HOH A 103 703 105 HOH HOH . I 8 HOH A 104 704 106 HOH HOH . I 8 HOH A 105 705 107 HOH HOH . I 8 HOH A 106 706 108 HOH HOH . I 8 HOH A 107 707 109 HOH HOH . I 8 HOH A 108 708 110 HOH HOH . I 8 HOH A 109 709 111 HOH HOH . I 8 HOH A 110 710 112 HOH HOH . I 8 HOH A 111 711 113 HOH HOH . I 8 HOH A 112 712 114 HOH HOH . I 8 HOH A 113 713 115 HOH HOH . I 8 HOH A 114 714 116 HOH HOH . I 8 HOH A 115 715 117 HOH HOH . I 8 HOH A 116 716 118 HOH HOH . I 8 HOH A 117 717 119 HOH HOH . I 8 HOH A 118 718 120 HOH HOH . I 8 HOH A 119 719 121 HOH HOH . I 8 HOH A 120 720 122 HOH HOH . I 8 HOH A 121 721 123 HOH HOH . I 8 HOH A 122 722 124 HOH HOH . I 8 HOH A 123 723 125 HOH HOH . I 8 HOH A 124 724 126 HOH HOH . I 8 HOH A 125 725 127 HOH HOH . I 8 HOH A 126 726 128 HOH HOH . I 8 HOH A 127 727 129 HOH HOH . I 8 HOH A 128 728 130 HOH HOH . I 8 HOH A 129 729 131 HOH HOH . I 8 HOH A 130 730 132 HOH HOH . I 8 HOH A 131 731 133 HOH HOH . I 8 HOH A 132 732 134 HOH HOH . I 8 HOH A 133 733 135 HOH HOH . J 8 HOH B 1 101 11 HOH HOH . J 8 HOH B 2 102 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAR . . . F 6 5.193 10.854 9.824 1 50.56 ? N SAR 504 A 1 HETATM 2 C CA SAR . . . F 6 6.038 9.657 9.865 1 50.52 ? CA SAR 504 A 1 HETATM 3 C C SAR . . . F 6 7.199 9.667 8.887 1 50.43 ? C SAR 504 A 1 HETATM 4 O O SAR . . . F 6 7.327 8.766 8.057 1 50.28 ? O SAR 504 A 1 HETATM 5 C CN SAR . . . F 6 5.71 12.175 10.148 1 50.91 ? CN SAR 504 A 1 HETATM 6 O OXT SAR . . . F 6 8.058 10.555 8.894 1 50.39 ? OXT SAR 504 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #