data_4OI1 # _model_server_result.job_id r8OlEx01PrwMO383aqaCMw _model_server_result.datetime_utc '2024-11-29 02:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oi1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 4OI1 # _exptl.entry_id 4OI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OI1 _cell.length_a 100.74 _cell.length_b 100.74 _cell.length_c 40.41 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 131 A THR 128 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C O2B ADP . A ADP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 D MG MG . A MG 502 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 D MG MG . A MG 502 1_555 G O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 D MG MG . A MG 502 1_555 G O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 4OI1 _atom_sites.fract_transf_matrix[1][1] 0.009927 _atom_sites.fract_transf_matrix[1][2] 0.005731 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 501 1 ADP ADP . D 4 MG A 1 502 2 MG MG . E 5 ALF A 1 503 3 ALF ALF . F 6 2PE A 1 504 11 2PE 2PE . G 7 HOH A 1 601 1 HOH HOH . G 7 HOH A 2 602 2 HOH HOH . G 7 HOH A 3 603 3 HOH HOH . G 7 HOH A 4 604 4 HOH HOH . G 7 HOH A 5 605 5 HOH HOH . G 7 HOH A 6 606 6 HOH HOH . G 7 HOH A 7 607 7 HOH HOH . G 7 HOH A 8 608 8 HOH HOH . G 7 HOH A 9 609 9 HOH HOH . G 7 HOH A 10 610 10 HOH HOH . G 7 HOH A 11 611 12 HOH HOH . G 7 HOH A 12 612 13 HOH HOH . G 7 HOH A 13 613 14 HOH HOH . G 7 HOH A 14 614 15 HOH HOH . G 7 HOH A 15 615 16 HOH HOH . G 7 HOH A 16 616 17 HOH HOH . G 7 HOH A 17 617 18 HOH HOH . G 7 HOH A 18 618 19 HOH HOH . G 7 HOH A 19 619 20 HOH HOH . G 7 HOH A 20 620 21 HOH HOH . G 7 HOH A 21 621 22 HOH HOH . G 7 HOH A 22 622 23 HOH HOH . G 7 HOH A 23 623 24 HOH HOH . G 7 HOH A 24 624 25 HOH HOH . G 7 HOH A 25 625 26 HOH HOH . G 7 HOH A 26 626 27 HOH HOH . G 7 HOH A 27 627 28 HOH HOH . G 7 HOH A 28 628 29 HOH HOH . G 7 HOH A 29 629 30 HOH HOH . G 7 HOH A 30 630 31 HOH HOH . G 7 HOH A 31 631 32 HOH HOH . G 7 HOH A 32 632 33 HOH HOH . G 7 HOH A 33 633 34 HOH HOH . G 7 HOH A 34 634 35 HOH HOH . G 7 HOH A 35 635 36 HOH HOH . G 7 HOH A 36 636 37 HOH HOH . G 7 HOH A 37 637 38 HOH HOH . G 7 HOH A 38 638 39 HOH HOH . G 7 HOH A 39 639 40 HOH HOH . G 7 HOH A 40 640 41 HOH HOH . G 7 HOH A 41 641 42 HOH HOH . G 7 HOH A 42 642 43 HOH HOH . G 7 HOH A 43 643 44 HOH HOH . G 7 HOH A 44 644 45 HOH HOH . G 7 HOH A 45 645 46 HOH HOH . G 7 HOH A 46 646 47 HOH HOH . G 7 HOH A 47 647 48 HOH HOH . G 7 HOH A 48 648 49 HOH HOH . G 7 HOH A 49 649 50 HOH HOH . G 7 HOH A 50 650 51 HOH HOH . G 7 HOH A 51 651 52 HOH HOH . G 7 HOH A 52 652 53 HOH HOH . G 7 HOH A 53 653 54 HOH HOH . G 7 HOH A 54 654 56 HOH HOH . G 7 HOH A 55 655 57 HOH HOH . G 7 HOH A 56 656 58 HOH HOH . G 7 HOH A 57 657 59 HOH HOH . G 7 HOH A 58 658 60 HOH HOH . G 7 HOH A 59 659 61 HOH HOH . G 7 HOH A 60 660 62 HOH HOH . G 7 HOH A 61 661 63 HOH HOH . G 7 HOH A 62 662 64 HOH HOH . G 7 HOH A 63 663 65 HOH HOH . G 7 HOH A 64 664 66 HOH HOH . G 7 HOH A 65 665 67 HOH HOH . G 7 HOH A 66 666 68 HOH HOH . G 7 HOH A 67 667 69 HOH HOH . G 7 HOH A 68 668 70 HOH HOH . G 7 HOH A 69 669 71 HOH HOH . G 7 HOH A 70 670 72 HOH HOH . G 7 HOH A 71 671 73 HOH HOH . G 7 HOH A 72 672 74 HOH HOH . G 7 HOH A 73 673 75 HOH HOH . G 7 HOH A 74 674 76 HOH HOH . G 7 HOH A 75 675 77 HOH HOH . G 7 HOH A 76 676 78 HOH HOH . G 7 HOH A 77 677 79 HOH HOH . G 7 HOH A 78 678 80 HOH HOH . G 7 HOH A 79 679 81 HOH HOH . G 7 HOH A 80 680 82 HOH HOH . G 7 HOH A 81 681 83 HOH HOH . G 7 HOH A 82 682 84 HOH HOH . G 7 HOH A 83 683 85 HOH HOH . G 7 HOH A 84 684 86 HOH HOH . G 7 HOH A 85 685 87 HOH HOH . G 7 HOH A 86 686 88 HOH HOH . G 7 HOH A 87 687 89 HOH HOH . G 7 HOH A 88 688 90 HOH HOH . G 7 HOH A 89 689 91 HOH HOH . G 7 HOH A 90 690 92 HOH HOH . G 7 HOH A 91 691 93 HOH HOH . G 7 HOH A 92 692 94 HOH HOH . G 7 HOH A 93 693 95 HOH HOH . G 7 HOH A 94 694 96 HOH HOH . G 7 HOH A 95 695 97 HOH HOH . G 7 HOH A 96 696 98 HOH HOH . G 7 HOH A 97 697 99 HOH HOH . G 7 HOH A 98 698 100 HOH HOH . G 7 HOH A 99 699 101 HOH HOH . G 7 HOH A 100 700 102 HOH HOH . G 7 HOH A 101 701 103 HOH HOH . G 7 HOH A 102 702 104 HOH HOH . G 7 HOH A 103 703 105 HOH HOH . G 7 HOH A 104 704 106 HOH HOH . G 7 HOH A 105 705 107 HOH HOH . G 7 HOH A 106 706 108 HOH HOH . G 7 HOH A 107 707 109 HOH HOH . G 7 HOH A 108 708 110 HOH HOH . G 7 HOH A 109 709 111 HOH HOH . G 7 HOH A 110 710 112 HOH HOH . G 7 HOH A 111 711 114 HOH HOH . G 7 HOH A 112 712 115 HOH HOH . G 7 HOH A 113 713 116 HOH HOH . G 7 HOH A 114 714 117 HOH HOH . G 7 HOH A 115 715 118 HOH HOH . G 7 HOH A 116 716 119 HOH HOH . G 7 HOH A 117 717 120 HOH HOH . G 7 HOH A 118 718 121 HOH HOH . G 7 HOH A 119 719 122 HOH HOH . G 7 HOH A 120 720 123 HOH HOH . G 7 HOH A 121 721 124 HOH HOH . G 7 HOH A 122 722 125 HOH HOH . G 7 HOH A 123 723 126 HOH HOH . G 7 HOH A 124 724 127 HOH HOH . G 7 HOH A 125 725 128 HOH HOH . G 7 HOH A 126 726 129 HOH HOH . G 7 HOH A 127 727 55 HOH HOH . H 7 HOH B 1 101 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . F 6 -16.859 8.065 -13.026 1 60.18 ? O1 2PE 504 A 1 HETATM 2 C C2 2PE . . . F 6 -15.941 8.894 -13.747 1 57.36 ? C2 2PE 504 A 1 HETATM 3 C C3 2PE . . . F 6 -15.471 10.029 -12.836 1 54.65 ? C3 2PE 504 A 1 HETATM 4 O O4 2PE . . . F 6 -15.821 11.303 -13.4 1 50.43 ? O4 2PE 504 A 1 HETATM 5 C C5 2PE . . . F 6 -14.934 12.375 -13.067 1 41.46 ? C5 2PE 504 A 1 HETATM 6 C C6 2PE . . . F 6 -15.313 12.938 -11.707 1 35.34 ? C6 2PE 504 A 1 HETATM 7 O O7 2PE . . . F 6 -14.102 13.114 -10.983 1 31.43 ? O7 2PE 504 A 1 HETATM 8 C C8 2PE . . . F 6 -14.206 12.816 -9.597 1 28.2 ? C8 2PE 504 A 1 HETATM 9 C C9 2PE . . . F 6 -12.79 12.669 -9.056 1 26.86 ? C9 2PE 504 A 1 HETATM 10 O O10 2PE . . . F 6 -12.451 11.296 -9.148 1 28.43 ? O10 2PE 504 A 1 HETATM 11 C C11 2PE . . . F 6 -11.101 10.98 -8.827 1 28.11 ? C11 2PE 504 A 1 HETATM 12 C C12 2PE . . . F 6 -10.434 10.405 -10.066 1 30.98 ? C12 2PE 504 A 1 HETATM 13 O O13 2PE . . . F 6 -10.876 9.07 -10.23 1 33.32 ? O13 2PE 504 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #