data_4OI4 # _model_server_result.job_id fovTiwGEtWj7MSbzENYggA _model_server_result.datetime_utc '2024-11-25 10:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 4OI4 # _exptl.entry_id 4OI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OI4 _cell.length_a 89.64 _cell.length_b 95.77 _cell.length_c 181.58 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F,G,H,M,O 1 1 B,D,I,J,K,L,N,P 2 1 E,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 145 A THR 137 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 F O1G ATP . A ATP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 F O2B ATP . A ATP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 G MG MG . A MG 502 1_555 M O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 G MG MG . A MG 502 1_555 M O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 G MG MG . A MG 502 1_555 M O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 B OG1 THR 145 C THR 137 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc8 I O1B ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 I O2G ATP . C ATP 501 1_555 J MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc10 J MG MG . C MG 502 1_555 N O HOH . C HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc11 J MG MG . C MG 502 1_555 N O HOH . C HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 J MG MG . C MG 502 1_555 N O HOH . C HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 4OI4 _atom_sites.fract_transf_matrix[1][1] 0.011156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 ATP A 1 501 600 ATP ATP . G 4 MG A 1 502 601 MG MG . H 5 GOL A 1 503 2000 GOL GOL . I 3 ATP C 1 501 1600 ATP ATP . J 4 MG C 1 502 1601 MG MG . K 5 GOL C 1 503 2001 GOL GOL . L 5 GOL C 1 504 2003 GOL GOL . M 6 HOH A 1 601 4 HOH HOH . M 6 HOH A 2 602 5 HOH HOH . M 6 HOH A 3 603 6 HOH HOH . M 6 HOH A 4 604 11 HOH HOH . M 6 HOH A 5 605 12 HOH HOH . M 6 HOH A 6 606 14 HOH HOH . M 6 HOH A 7 607 17 HOH HOH . M 6 HOH A 8 608 19 HOH HOH . M 6 HOH A 9 609 21 HOH HOH . M 6 HOH A 10 610 22 HOH HOH . M 6 HOH A 11 611 23 HOH HOH . M 6 HOH A 12 612 31 HOH HOH . M 6 HOH A 13 613 32 HOH HOH . M 6 HOH A 14 614 36 HOH HOH . M 6 HOH A 15 615 39 HOH HOH . M 6 HOH A 16 616 40 HOH HOH . M 6 HOH A 17 617 41 HOH HOH . M 6 HOH A 18 618 43 HOH HOH . M 6 HOH A 19 619 46 HOH HOH . M 6 HOH A 20 620 49 HOH HOH . M 6 HOH A 21 621 52 HOH HOH . M 6 HOH A 22 622 54 HOH HOH . M 6 HOH A 23 623 56 HOH HOH . M 6 HOH A 24 624 58 HOH HOH . M 6 HOH A 25 625 60 HOH HOH . M 6 HOH A 26 626 64 HOH HOH . M 6 HOH A 27 627 67 HOH HOH . M 6 HOH A 28 628 71 HOH HOH . M 6 HOH A 29 629 72 HOH HOH . M 6 HOH A 30 630 75 HOH HOH . M 6 HOH A 31 631 76 HOH HOH . M 6 HOH A 32 632 79 HOH HOH . M 6 HOH A 33 633 82 HOH HOH . M 6 HOH A 34 634 83 HOH HOH . M 6 HOH A 35 635 87 HOH HOH . M 6 HOH A 36 636 89 HOH HOH . M 6 HOH A 37 637 90 HOH HOH . M 6 HOH A 38 638 91 HOH HOH . M 6 HOH A 39 639 94 HOH HOH . M 6 HOH A 40 640 97 HOH HOH . M 6 HOH A 41 641 105 HOH HOH . M 6 HOH A 42 642 107 HOH HOH . M 6 HOH A 43 643 108 HOH HOH . M 6 HOH A 44 644 109 HOH HOH . M 6 HOH A 45 645 112 HOH HOH . M 6 HOH A 46 646 116 HOH HOH . M 6 HOH A 47 647 120 HOH HOH . M 6 HOH A 48 648 122 HOH HOH . M 6 HOH A 49 649 125 HOH HOH . M 6 HOH A 50 650 126 HOH HOH . M 6 HOH A 51 651 128 HOH HOH . M 6 HOH A 52 652 130 HOH HOH . M 6 HOH A 53 653 132 HOH HOH . M 6 HOH A 54 654 134 HOH HOH . M 6 HOH A 55 655 136 HOH HOH . M 6 HOH A 56 656 137 HOH HOH . M 6 HOH A 57 657 138 HOH HOH . M 6 HOH A 58 658 141 HOH HOH . M 6 HOH A 59 659 142 HOH HOH . M 6 HOH A 60 660 143 HOH HOH . M 6 HOH A 61 661 144 HOH HOH . M 6 HOH A 62 662 146 HOH HOH . M 6 HOH A 63 663 148 HOH HOH . M 6 HOH A 64 664 152 HOH HOH . M 6 HOH A 65 665 153 HOH HOH . M 6 HOH A 66 666 162 HOH HOH . M 6 HOH A 67 667 168 HOH HOH . M 6 HOH A 68 668 171 HOH HOH . M 6 HOH A 69 669 172 HOH HOH . M 6 HOH A 70 670 176 HOH HOH . M 6 HOH A 71 671 184 HOH HOH . M 6 HOH A 72 672 187 HOH HOH . M 6 HOH A 73 673 188 HOH HOH . M 6 HOH A 74 674 197 HOH HOH . M 6 HOH A 75 675 200 HOH HOH . M 6 HOH A 76 676 201 HOH HOH . M 6 HOH A 77 677 203 HOH HOH . M 6 HOH A 78 678 210 HOH HOH . M 6 HOH A 79 679 213 HOH HOH . M 6 HOH A 80 680 217 HOH HOH . M 6 HOH A 81 681 220 HOH HOH . M 6 HOH A 82 682 221 HOH HOH . M 6 HOH A 83 683 228 HOH HOH . M 6 HOH A 84 684 234 HOH HOH . M 6 HOH A 85 685 235 HOH HOH . M 6 HOH A 86 686 236 HOH HOH . M 6 HOH A 87 687 239 HOH HOH . M 6 HOH A 88 688 262 HOH HOH . M 6 HOH A 89 689 265 HOH HOH . M 6 HOH A 90 690 266 HOH HOH . M 6 HOH A 91 691 269 HOH HOH . M 6 HOH A 92 692 272 HOH HOH . M 6 HOH A 93 693 273 HOH HOH . M 6 HOH A 94 694 274 HOH HOH . M 6 HOH A 95 695 283 HOH HOH . M 6 HOH A 96 696 294 HOH HOH . M 6 HOH A 97 697 297 HOH HOH . M 6 HOH A 98 698 300 HOH HOH . M 6 HOH A 99 699 306 HOH HOH . M 6 HOH A 100 700 323 HOH HOH . M 6 HOH A 101 701 325 HOH HOH . M 6 HOH A 102 702 327 HOH HOH . M 6 HOH A 103 703 329 HOH HOH . M 6 HOH A 104 704 330 HOH HOH . M 6 HOH A 105 705 333 HOH HOH . M 6 HOH A 106 706 336 HOH HOH . M 6 HOH A 107 707 337 HOH HOH . M 6 HOH A 108 708 338 HOH HOH . M 6 HOH A 109 709 351 HOH HOH . M 6 HOH A 110 710 357 HOH HOH . M 6 HOH A 111 711 359 HOH HOH . M 6 HOH A 112 712 363 HOH HOH . M 6 HOH A 113 713 376 HOH HOH . M 6 HOH A 114 714 377 HOH HOH . M 6 HOH A 115 715 380 HOH HOH . M 6 HOH A 116 716 381 HOH HOH . M 6 HOH A 117 717 382 HOH HOH . M 6 HOH A 118 718 391 HOH HOH . M 6 HOH A 119 719 393 HOH HOH . M 6 HOH A 120 720 394 HOH HOH . N 6 HOH C 1 601 1 HOH HOH . N 6 HOH C 2 602 2 HOH HOH . N 6 HOH C 3 603 8 HOH HOH . N 6 HOH C 4 604 9 HOH HOH . N 6 HOH C 5 605 16 HOH HOH . N 6 HOH C 6 606 18 HOH HOH . N 6 HOH C 7 607 24 HOH HOH . N 6 HOH C 8 608 25 HOH HOH . N 6 HOH C 9 609 26 HOH HOH . N 6 HOH C 10 610 27 HOH HOH . N 6 HOH C 11 611 28 HOH HOH . N 6 HOH C 12 612 29 HOH HOH . N 6 HOH C 13 613 34 HOH HOH . N 6 HOH C 14 614 35 HOH HOH . N 6 HOH C 15 615 37 HOH HOH . N 6 HOH C 16 616 38 HOH HOH . N 6 HOH C 17 617 45 HOH HOH . N 6 HOH C 18 618 47 HOH HOH . N 6 HOH C 19 619 48 HOH HOH . N 6 HOH C 20 620 51 HOH HOH . N 6 HOH C 21 621 53 HOH HOH . N 6 HOH C 22 622 55 HOH HOH . N 6 HOH C 23 623 59 HOH HOH . N 6 HOH C 24 624 62 HOH HOH . N 6 HOH C 25 625 63 HOH HOH . N 6 HOH C 26 626 66 HOH HOH . N 6 HOH C 27 627 70 HOH HOH . N 6 HOH C 28 628 74 HOH HOH . N 6 HOH C 29 629 77 HOH HOH . N 6 HOH C 30 630 78 HOH HOH . N 6 HOH C 31 631 80 HOH HOH . N 6 HOH C 32 632 85 HOH HOH . N 6 HOH C 33 633 93 HOH HOH . N 6 HOH C 34 634 99 HOH HOH . N 6 HOH C 35 635 100 HOH HOH . N 6 HOH C 36 636 101 HOH HOH . N 6 HOH C 37 637 104 HOH HOH . N 6 HOH C 38 638 106 HOH HOH . N 6 HOH C 39 639 115 HOH HOH . N 6 HOH C 40 640 117 HOH HOH . N 6 HOH C 41 641 118 HOH HOH . N 6 HOH C 42 642 129 HOH HOH . N 6 HOH C 43 643 131 HOH HOH . N 6 HOH C 44 644 150 HOH HOH . N 6 HOH C 45 645 160 HOH HOH . N 6 HOH C 46 646 163 HOH HOH . N 6 HOH C 47 647 166 HOH HOH . N 6 HOH C 48 648 167 HOH HOH . N 6 HOH C 49 649 179 HOH HOH . N 6 HOH C 50 650 185 HOH HOH . N 6 HOH C 51 651 186 HOH HOH . N 6 HOH C 52 652 189 HOH HOH . N 6 HOH C 53 653 192 HOH HOH . N 6 HOH C 54 654 193 HOH HOH . N 6 HOH C 55 655 194 HOH HOH . N 6 HOH C 56 656 195 HOH HOH . N 6 HOH C 57 657 215 HOH HOH . N 6 HOH C 58 658 238 HOH HOH . N 6 HOH C 59 659 247 HOH HOH . N 6 HOH C 60 660 250 HOH HOH . N 6 HOH C 61 661 251 HOH HOH . N 6 HOH C 62 662 260 HOH HOH . N 6 HOH C 63 663 268 HOH HOH . N 6 HOH C 64 664 277 HOH HOH . N 6 HOH C 65 665 293 HOH HOH . N 6 HOH C 66 666 295 HOH HOH . N 6 HOH C 67 667 301 HOH HOH . N 6 HOH C 68 668 308 HOH HOH . N 6 HOH C 69 669 316 HOH HOH . N 6 HOH C 70 670 324 HOH HOH . N 6 HOH C 71 671 326 HOH HOH . N 6 HOH C 72 672 331 HOH HOH . N 6 HOH C 73 673 332 HOH HOH . N 6 HOH C 74 674 334 HOH HOH . N 6 HOH C 75 675 335 HOH HOH . N 6 HOH C 76 676 339 HOH HOH . N 6 HOH C 77 677 348 HOH HOH . N 6 HOH C 78 678 358 HOH HOH . N 6 HOH C 79 679 362 HOH HOH . N 6 HOH C 80 680 375 HOH HOH . N 6 HOH C 81 681 378 HOH HOH . N 6 HOH C 82 682 383 HOH HOH . N 6 HOH C 83 683 386 HOH HOH . N 6 HOH C 84 684 388 HOH HOH . N 6 HOH C 85 685 397 HOH HOH . N 6 HOH C 86 686 398 HOH HOH . N 6 HOH C 87 687 400 HOH HOH . N 6 HOH C 88 688 401 HOH HOH . N 6 HOH C 89 689 402 HOH HOH . N 6 HOH C 90 690 404 HOH HOH . O 6 HOH B 1 601 3 HOH HOH . O 6 HOH B 2 602 7 HOH HOH . O 6 HOH B 3 603 13 HOH HOH . O 6 HOH B 4 604 30 HOH HOH . O 6 HOH B 5 605 33 HOH HOH . O 6 HOH B 6 606 44 HOH HOH . O 6 HOH B 7 607 65 HOH HOH . O 6 HOH B 8 608 92 HOH HOH . O 6 HOH B 9 609 102 HOH HOH . O 6 HOH B 10 610 113 HOH HOH . O 6 HOH B 11 611 140 HOH HOH . O 6 HOH B 12 612 145 HOH HOH . O 6 HOH B 13 613 164 HOH HOH . O 6 HOH B 14 614 219 HOH HOH . O 6 HOH B 15 615 280 HOH HOH . O 6 HOH B 16 616 303 HOH HOH . O 6 HOH B 17 617 304 HOH HOH . O 6 HOH B 18 618 328 HOH HOH . O 6 HOH B 19 619 344 HOH HOH . O 6 HOH B 20 620 392 HOH HOH . P 6 HOH D 1 601 10 HOH HOH . P 6 HOH D 2 602 20 HOH HOH . P 6 HOH D 3 603 42 HOH HOH . P 6 HOH D 4 604 61 HOH HOH . P 6 HOH D 5 605 68 HOH HOH . P 6 HOH D 6 606 88 HOH HOH . P 6 HOH D 7 607 135 HOH HOH . P 6 HOH D 8 608 147 HOH HOH . P 6 HOH D 9 609 149 HOH HOH . P 6 HOH D 10 610 271 HOH HOH . P 6 HOH D 11 611 318 HOH HOH . P 6 HOH D 12 612 319 HOH HOH . P 6 HOH D 13 613 321 HOH HOH . P 6 HOH D 14 614 385 HOH HOH . P 6 HOH D 15 615 399 HOH HOH . Q 6 HOH U 1 601 222 HOH HOH . Q 6 HOH U 2 602 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 40.044 15.229 31.194 1 62.11 ? C1 GOL 504 C 1 HETATM 2 O O1 GOL . . . L 5 39.236 15.271 30.036 1 61.62 ? O1 GOL 504 C 1 HETATM 3 C C2 GOL . . . L 5 41.358 14.495 30.947 1 61.46 ? C2 GOL 504 C 1 HETATM 4 O O2 GOL . . . L 5 42.012 14.285 32.18 1 60.81 ? O2 GOL 504 C 1 HETATM 5 C C3 GOL . . . L 5 42.25 15.317 30.023 1 61.48 ? C3 GOL 504 C 1 HETATM 6 O O3 GOL . . . L 5 43.503 14.703 29.791 1 61.89 ? O3 GOL 504 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #