data_4OI6 # _model_server_result.job_id --mG8XWaLztp8YsexE4ubQ _model_server_result.datetime_utc '2024-12-08 21:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4OI6 # _exptl.entry_id 4OI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.98 _cell.angle_gamma 90 _cell.entry_id 4OI6 _cell.length_a 28.33 _cell.length_b 67.14 _cell.length_c 35.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 11 A PHE 4 1_555 A N MSE 12 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 12 A MSE 5 1_555 A N ASP 13 A ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLY 17 A GLY 10 1_555 A N MSE 18 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 18 A MSE 11 1_555 A N HIS 19 A HIS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C PHE 11 B PHE 4 1_555 B N MSE 12 B MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C MSE 12 B MSE 5 1_555 B N ASP 13 B ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C GLY 17 B GLY 10 1_555 B N MSE 18 B MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 18 B MSE 11 1_555 B N HIS 19 B HIS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 30 A HIS 23 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A OE1 GLU 81 A GLU 74 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A OE2 GLU 81 A GLU 74 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A ND1 HIS 83 A HIS 76 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 C NI NI . A NI 101 1_555 H O HOH . A HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 C NI NI . A NI 101 1_555 H O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 C NI NI . A NI 101 1_555 H O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 D NI NI . A NI 102 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc9 D NI NI . A NI 102 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 D NI NI . A NI 102 1_555 B OXT ALA 89 B ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 D NI NI . A NI 102 1_555 I O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 B NE2 HIS 10 B HIS 3 1_555 F NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc13 B OE2 GLU 45 B GLU 38 1_555 F NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc14 B OD2 ASP 50 B ASP 43 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc15 B OG SER 53 B SER 46 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc16 E NI NI . B NI 101 1_555 G O7 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc17 E NI NI . B NI 101 1_555 G O4 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 E NI NI . B NI 101 1_555 G O6 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc19 F NI NI . B NI 102 1_555 I O HOH . B HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc20 F NI NI . B NI 102 1_555 I O HOH . B HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc21 F NI NI . B NI 102 1_555 I O HOH . B HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OI6 _atom_sites.fract_transf_matrix[1][1] 0.035298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003076 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 101 3 NI NI . D 2 NI A 1 102 5 NI NI . E 2 NI B 1 101 1 NI NI . F 2 NI B 1 102 2 NI NI . G 3 CIT B 1 103 2 CIT CIT . H 4 HOH A 1 201 1 HOH HOH . H 4 HOH A 2 202 2 HOH HOH . H 4 HOH A 3 203 6 HOH HOH . H 4 HOH A 4 204 8 HOH HOH . H 4 HOH A 5 205 11 HOH HOH . H 4 HOH A 6 206 12 HOH HOH . H 4 HOH A 7 207 13 HOH HOH . H 4 HOH A 8 208 14 HOH HOH . H 4 HOH A 9 209 16 HOH HOH . H 4 HOH A 10 210 17 HOH HOH . H 4 HOH A 11 211 19 HOH HOH . H 4 HOH A 12 212 24 HOH HOH . H 4 HOH A 13 213 25 HOH HOH . H 4 HOH A 14 214 28 HOH HOH . H 4 HOH A 15 215 31 HOH HOH . H 4 HOH A 16 216 36 HOH HOH . H 4 HOH A 17 217 38 HOH HOH . H 4 HOH A 18 218 39 HOH HOH . H 4 HOH A 19 219 40 HOH HOH . H 4 HOH A 20 220 42 HOH HOH . H 4 HOH A 21 221 43 HOH HOH . H 4 HOH A 22 222 44 HOH HOH . H 4 HOH A 23 223 50 HOH HOH . H 4 HOH A 24 224 51 HOH HOH . H 4 HOH A 25 225 54 HOH HOH . H 4 HOH A 26 226 56 HOH HOH . H 4 HOH A 27 227 57 HOH HOH . H 4 HOH A 28 228 60 HOH HOH . H 4 HOH A 29 229 62 HOH HOH . H 4 HOH A 30 230 63 HOH HOH . H 4 HOH A 31 231 64 HOH HOH . H 4 HOH A 32 232 65 HOH HOH . H 4 HOH A 33 233 68 HOH HOH . H 4 HOH A 34 234 70 HOH HOH . H 4 HOH A 35 235 71 HOH HOH . H 4 HOH A 36 236 72 HOH HOH . H 4 HOH A 37 237 73 HOH HOH . H 4 HOH A 38 238 78 HOH HOH . H 4 HOH A 39 239 80 HOH HOH . H 4 HOH A 40 240 81 HOH HOH . H 4 HOH A 41 241 82 HOH HOH . H 4 HOH A 42 242 89 HOH HOH . H 4 HOH A 43 243 90 HOH HOH . H 4 HOH A 44 244 91 HOH HOH . H 4 HOH A 45 245 92 HOH HOH . I 4 HOH B 1 201 3 HOH HOH . I 4 HOH B 2 202 4 HOH HOH . I 4 HOH B 3 203 5 HOH HOH . I 4 HOH B 4 204 7 HOH HOH . I 4 HOH B 5 205 9 HOH HOH . I 4 HOH B 6 206 10 HOH HOH . I 4 HOH B 7 207 15 HOH HOH . I 4 HOH B 8 208 18 HOH HOH . I 4 HOH B 9 209 20 HOH HOH . I 4 HOH B 10 210 21 HOH HOH . I 4 HOH B 11 211 22 HOH HOH . I 4 HOH B 12 212 23 HOH HOH . I 4 HOH B 13 213 26 HOH HOH . I 4 HOH B 14 214 27 HOH HOH . I 4 HOH B 15 215 29 HOH HOH . I 4 HOH B 16 216 30 HOH HOH . I 4 HOH B 17 217 32 HOH HOH . I 4 HOH B 18 218 33 HOH HOH . I 4 HOH B 19 219 34 HOH HOH . I 4 HOH B 20 220 35 HOH HOH . I 4 HOH B 21 221 37 HOH HOH . I 4 HOH B 22 222 41 HOH HOH . I 4 HOH B 23 223 45 HOH HOH . I 4 HOH B 24 224 46 HOH HOH . I 4 HOH B 25 225 47 HOH HOH . I 4 HOH B 26 226 48 HOH HOH . I 4 HOH B 27 227 49 HOH HOH . I 4 HOH B 28 228 52 HOH HOH . I 4 HOH B 29 229 53 HOH HOH . I 4 HOH B 30 230 55 HOH HOH . I 4 HOH B 31 231 58 HOH HOH . I 4 HOH B 32 232 59 HOH HOH . I 4 HOH B 33 233 61 HOH HOH . I 4 HOH B 34 234 66 HOH HOH . I 4 HOH B 35 235 67 HOH HOH . I 4 HOH B 36 236 69 HOH HOH . I 4 HOH B 37 237 74 HOH HOH . I 4 HOH B 38 238 75 HOH HOH . I 4 HOH B 39 239 76 HOH HOH . I 4 HOH B 40 240 77 HOH HOH . I 4 HOH B 41 241 79 HOH HOH . I 4 HOH B 42 242 83 HOH HOH . I 4 HOH B 43 243 84 HOH HOH . I 4 HOH B 44 244 85 HOH HOH . I 4 HOH B 45 245 86 HOH HOH . I 4 HOH B 46 246 87 HOH HOH . I 4 HOH B 47 247 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.097 _atom_site.Cartn_y -1.428 _atom_site.Cartn_z 2.776 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 17.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #