data_4OI6
#
_model_server_result.job_id            zoHUcgYReXlcKG6gsBvIlg 
_model_server_result.datetime_utc      '2024-12-09 04:41:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oi6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":102}' 
#
_entry.id    4OI6 
#
_exptl.entry_id    4OI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.98 
_cell.angle_gamma         90 
_cell.entry_id            4OI6 
_cell.length_a            28.33 
_cell.length_b            67.14 
_cell.length_c            35.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 11 A PHE 4 1_555 A N MSE 12 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 12 A MSE 5 1_555 A N ASP 13 A ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C GLY 17 A GLY 10 1_555 A N MSE 18 A MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 18 A MSE 11 1_555 A N HIS 19 A HIS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B C PHE 11 B PHE 4 1_555 B N MSE 12 B MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 B C MSE 12 B MSE 5 1_555 B N ASP 13 B ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 B C GLY 17 B GLY 10 1_555 B N MSE 18 B MSE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 B C MSE 18 B MSE 11 1_555 B N HIS 19 B HIS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 30 A HIS 23 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 74 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 A OE2 GLU 81 A GLU 74 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 A ND1 HIS 83 A HIS 76 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 C NI NI . A NI 101 1_555 H O HOH . A HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc6 C NI NI . A NI 101 1_555 H O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 C NI NI . A NI 101 1_555 H O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc8 D NI NI . A NI 102 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc9 D NI NI . A NI 102 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc10 D NI NI . A NI 102 1_555 B OXT ALA 89 B ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc11 D NI NI . A NI 102 1_555 I O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc12 B NE2 HIS 10 B HIS 3 1_555 F NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc13 B OE2 GLU 45 B GLU 38 1_555 F NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc14 B OD2 ASP 50 B ASP 43 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc15 B OG SER 53 B SER 46 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc16 E NI NI . B NI 101 1_555 G O7 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc17 E NI NI . B NI 101 1_555 G O4 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc18 E NI NI . B NI 101 1_555 G O6 CIT . B CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc19 F NI NI . B NI 102 1_555 I O HOH . B HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc20 F NI NI . B NI 102 1_555 I O HOH . B HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc21 F NI NI . B NI 102 1_555 I O HOH . B HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4OI6 
_atom_sites.fract_transf_matrix[1][1]    0.035298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003076 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 101 3 NI NI . 
D 2 NI A 1 102 5 NI NI . 
E 2 NI B 1 101 1 NI NI . 
F 2 NI B 1 102 2 NI NI . 
G 3 CIT B 1 103 2 CIT CIT . 
H 4 HOH A 1 201 1 HOH HOH . 
H 4 HOH A 2 202 2 HOH HOH . 
H 4 HOH A 3 203 6 HOH HOH . 
H 4 HOH A 4 204 8 HOH HOH . 
H 4 HOH A 5 205 11 HOH HOH . 
H 4 HOH A 6 206 12 HOH HOH . 
H 4 HOH A 7 207 13 HOH HOH . 
H 4 HOH A 8 208 14 HOH HOH . 
H 4 HOH A 9 209 16 HOH HOH . 
H 4 HOH A 10 210 17 HOH HOH . 
H 4 HOH A 11 211 19 HOH HOH . 
H 4 HOH A 12 212 24 HOH HOH . 
H 4 HOH A 13 213 25 HOH HOH . 
H 4 HOH A 14 214 28 HOH HOH . 
H 4 HOH A 15 215 31 HOH HOH . 
H 4 HOH A 16 216 36 HOH HOH . 
H 4 HOH A 17 217 38 HOH HOH . 
H 4 HOH A 18 218 39 HOH HOH . 
H 4 HOH A 19 219 40 HOH HOH . 
H 4 HOH A 20 220 42 HOH HOH . 
H 4 HOH A 21 221 43 HOH HOH . 
H 4 HOH A 22 222 44 HOH HOH . 
H 4 HOH A 23 223 50 HOH HOH . 
H 4 HOH A 24 224 51 HOH HOH . 
H 4 HOH A 25 225 54 HOH HOH . 
H 4 HOH A 26 226 56 HOH HOH . 
H 4 HOH A 27 227 57 HOH HOH . 
H 4 HOH A 28 228 60 HOH HOH . 
H 4 HOH A 29 229 62 HOH HOH . 
H 4 HOH A 30 230 63 HOH HOH . 
H 4 HOH A 31 231 64 HOH HOH . 
H 4 HOH A 32 232 65 HOH HOH . 
H 4 HOH A 33 233 68 HOH HOH . 
H 4 HOH A 34 234 70 HOH HOH . 
H 4 HOH A 35 235 71 HOH HOH . 
H 4 HOH A 36 236 72 HOH HOH . 
H 4 HOH A 37 237 73 HOH HOH . 
H 4 HOH A 38 238 78 HOH HOH . 
H 4 HOH A 39 239 80 HOH HOH . 
H 4 HOH A 40 240 81 HOH HOH . 
H 4 HOH A 41 241 82 HOH HOH . 
H 4 HOH A 42 242 89 HOH HOH . 
H 4 HOH A 43 243 90 HOH HOH . 
H 4 HOH A 44 244 91 HOH HOH . 
H 4 HOH A 45 245 92 HOH HOH . 
I 4 HOH B 1 201 3 HOH HOH . 
I 4 HOH B 2 202 4 HOH HOH . 
I 4 HOH B 3 203 5 HOH HOH . 
I 4 HOH B 4 204 7 HOH HOH . 
I 4 HOH B 5 205 9 HOH HOH . 
I 4 HOH B 6 206 10 HOH HOH . 
I 4 HOH B 7 207 15 HOH HOH . 
I 4 HOH B 8 208 18 HOH HOH . 
I 4 HOH B 9 209 20 HOH HOH . 
I 4 HOH B 10 210 21 HOH HOH . 
I 4 HOH B 11 211 22 HOH HOH . 
I 4 HOH B 12 212 23 HOH HOH . 
I 4 HOH B 13 213 26 HOH HOH . 
I 4 HOH B 14 214 27 HOH HOH . 
I 4 HOH B 15 215 29 HOH HOH . 
I 4 HOH B 16 216 30 HOH HOH . 
I 4 HOH B 17 217 32 HOH HOH . 
I 4 HOH B 18 218 33 HOH HOH . 
I 4 HOH B 19 219 34 HOH HOH . 
I 4 HOH B 20 220 35 HOH HOH . 
I 4 HOH B 21 221 37 HOH HOH . 
I 4 HOH B 22 222 41 HOH HOH . 
I 4 HOH B 23 223 45 HOH HOH . 
I 4 HOH B 24 224 46 HOH HOH . 
I 4 HOH B 25 225 47 HOH HOH . 
I 4 HOH B 26 226 48 HOH HOH . 
I 4 HOH B 27 227 49 HOH HOH . 
I 4 HOH B 28 228 52 HOH HOH . 
I 4 HOH B 29 229 53 HOH HOH . 
I 4 HOH B 30 230 55 HOH HOH . 
I 4 HOH B 31 231 58 HOH HOH . 
I 4 HOH B 32 232 59 HOH HOH . 
I 4 HOH B 33 233 61 HOH HOH . 
I 4 HOH B 34 234 66 HOH HOH . 
I 4 HOH B 35 235 67 HOH HOH . 
I 4 HOH B 36 236 69 HOH HOH . 
I 4 HOH B 37 237 74 HOH HOH . 
I 4 HOH B 38 238 75 HOH HOH . 
I 4 HOH B 39 239 76 HOH HOH . 
I 4 HOH B 40 240 77 HOH HOH . 
I 4 HOH B 41 241 79 HOH HOH . 
I 4 HOH B 42 242 83 HOH HOH . 
I 4 HOH B 43 243 84 HOH HOH . 
I 4 HOH B 44 244 85 HOH HOH . 
I 4 HOH B 45 245 86 HOH HOH . 
I 4 HOH B 46 246 87 HOH HOH . 
I 4 HOH B 47 247 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -3.705 
_atom_site.Cartn_y               -13.188 
_atom_site.Cartn_z               14.519 
_atom_site.occupancy             0.98 
_atom_site.B_iso_or_equiv        15.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           1166 
_model_server_stats.encode_time_ms          34 
_model_server_stats.element_count           1 
#