data_4OI9 # _model_server_result.job_id X8u8yiL0sg178EaY4EHtRQ _model_server_result.datetime_utc '2024-10-12 17:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2312}' # _entry.id 4OI9 # _exptl.entry_id 4OI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.34 _cell.angle_gamma 90 _cell.entry_id 4OI9 _cell.length_a 76.59 _cell.length_b 46.91 _cell.length_c 95.79 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2301 NAG 2 n B NAG 2 B 2 NAG A 2302 NAG 2 n C NAG 1 C 1 NAG A 1831 NAG 2 n C NAG 2 C 2 NAG A 1832 NAG 3 n D NAG 1 D 1 NAG A 2851 NAG 3 n D NAG 2 D 2 NAG A 2852 NAG 3 n D BMA 3 D 3 BMA A 2853 BMA 3 n D MAN 4 D 4 MAN A 2854 MAN 2 n E NAG 1 E 1 NAG A 2721 NAG 2 n E NAG 2 E 2 NAG A 2722 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 111 A CYS 111 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 218 A CYS 218 1_555 A SG CYS 271 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 313 A CYS 313 1_555 A SG CYS 352 A CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 43 A ASN 43 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 106 A ASN 106 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 164 A ASN 164 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 183 A ASN 183 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 272 A ASN 272 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 285 A ASN 285 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 340 A ASN 340 1_555 I C1 NAG . A NAG 2312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 A ND2 ASN 366 A ASN 366 1_555 J C1 NAG . A NAG 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OI9 _atom_sites.fract_transf_matrix[1][1] 0.013057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003338 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 2303 4301 NAG NAG . G 4 NAG A 1 2304 1061 NAG NAG . H 4 NAG A 1 2305 1641 NAG NAG . I 4 NAG A 1 2312 3401 NAG NAG . J 4 NAG A 1 2315 3661 NAG NAG . K 5 EDO A 1 2316 1 EDO EDO . L 5 EDO A 1 2317 2 EDO EDO . M 5 EDO A 1 2318 3 EDO EDO . N 5 EDO A 1 2319 4 EDO EDO . O 5 EDO A 1 2320 5 EDO EDO . P 5 EDO A 1 2321 6 EDO EDO . Q 5 EDO A 1 2322 7 EDO EDO . R 5 EDO A 1 2323 8 EDO EDO . S 5 EDO A 1 2324 9 EDO EDO . T 5 EDO A 1 2325 10 EDO EDO . U 5 EDO A 1 2326 11 EDO EDO . V 5 EDO A 1 2327 12 EDO EDO . W 5 EDO A 1 2328 13 EDO EDO . X 5 EDO A 1 2329 14 EDO EDO . Y 5 EDO A 1 2330 15 EDO EDO . Z 5 EDO A 1 2331 16 EDO EDO . AA 5 EDO A 1 2332 17 EDO EDO . BA 5 EDO A 1 2333 18 EDO EDO . CA 5 EDO A 1 2334 19 EDO EDO . DA 5 EDO A 1 2335 20 EDO EDO . EA 5 EDO A 1 2336 21 EDO EDO . FA 5 EDO A 1 2337 22 EDO EDO . GA 5 EDO A 1 2338 23 EDO EDO . HA 5 EDO A 1 2339 24 EDO EDO . IA 5 EDO A 1 2340 25 EDO EDO . JA 5 EDO A 1 2341 26 EDO EDO . KA 5 EDO A 1 2342 27 EDO EDO . LA 5 EDO A 1 2343 28 EDO EDO . MA 5 EDO A 1 2344 29 EDO EDO . NA 5 EDO A 1 2345 30 EDO EDO . OA 5 EDO A 1 2346 31 EDO EDO . PA 6 HOH A 1 2401 1 HOH HOH . PA 6 HOH A 2 2402 2 HOH HOH . PA 6 HOH A 3 2403 3 HOH HOH . PA 6 HOH A 4 2404 4 HOH HOH . PA 6 HOH A 5 2405 5 HOH HOH . PA 6 HOH A 6 2406 6 HOH HOH . PA 6 HOH A 7 2407 7 HOH HOH . PA 6 HOH A 8 2408 8 HOH HOH . PA 6 HOH A 9 2409 9 HOH HOH . PA 6 HOH A 10 2410 10 HOH HOH . PA 6 HOH A 11 2411 11 HOH HOH . PA 6 HOH A 12 2412 12 HOH HOH . PA 6 HOH A 13 2413 13 HOH HOH . PA 6 HOH A 14 2414 14 HOH HOH . PA 6 HOH A 15 2415 15 HOH HOH . PA 6 HOH A 16 2416 16 HOH HOH . PA 6 HOH A 17 2417 17 HOH HOH . PA 6 HOH A 18 2418 19 HOH HOH . PA 6 HOH A 19 2419 20 HOH HOH . PA 6 HOH A 20 2420 21 HOH HOH . PA 6 HOH A 21 2421 22 HOH HOH . PA 6 HOH A 22 2422 23 HOH HOH . PA 6 HOH A 23 2423 24 HOH HOH . PA 6 HOH A 24 2424 25 HOH HOH . PA 6 HOH A 25 2425 26 HOH HOH . PA 6 HOH A 26 2426 27 HOH HOH . PA 6 HOH A 27 2427 28 HOH HOH . PA 6 HOH A 28 2428 29 HOH HOH . PA 6 HOH A 29 2429 30 HOH HOH . PA 6 HOH A 30 2430 31 HOH HOH . PA 6 HOH A 31 2431 32 HOH HOH . PA 6 HOH A 32 2432 33 HOH HOH . PA 6 HOH A 33 2433 34 HOH HOH . PA 6 HOH A 34 2434 35 HOH HOH . PA 6 HOH A 35 2435 36 HOH HOH . PA 6 HOH A 36 2436 37 HOH HOH . PA 6 HOH A 37 2437 38 HOH HOH . PA 6 HOH A 38 2438 40 HOH HOH . PA 6 HOH A 39 2439 41 HOH HOH . PA 6 HOH A 40 2440 42 HOH HOH . PA 6 HOH A 41 2441 43 HOH HOH . PA 6 HOH A 42 2442 44 HOH HOH . PA 6 HOH A 43 2443 45 HOH HOH . PA 6 HOH A 44 2444 46 HOH HOH . PA 6 HOH A 45 2445 48 HOH HOH . PA 6 HOH A 46 2446 49 HOH HOH . PA 6 HOH A 47 2447 50 HOH HOH . PA 6 HOH A 48 2448 51 HOH HOH . PA 6 HOH A 49 2449 52 HOH HOH . PA 6 HOH A 50 2450 53 HOH HOH . PA 6 HOH A 51 2451 54 HOH HOH . PA 6 HOH A 52 2452 55 HOH HOH . PA 6 HOH A 53 2453 56 HOH HOH . PA 6 HOH A 54 2454 57 HOH HOH . PA 6 HOH A 55 2455 58 HOH HOH . PA 6 HOH A 56 2456 59 HOH HOH . PA 6 HOH A 57 2457 60 HOH HOH . PA 6 HOH A 58 2458 61 HOH HOH . PA 6 HOH A 59 2459 62 HOH HOH . PA 6 HOH A 60 2460 63 HOH HOH . PA 6 HOH A 61 2461 64 HOH HOH . PA 6 HOH A 62 2462 65 HOH HOH . PA 6 HOH A 63 2463 67 HOH HOH . PA 6 HOH A 64 2464 68 HOH HOH . PA 6 HOH A 65 2465 69 HOH HOH . PA 6 HOH A 66 2466 70 HOH HOH . PA 6 HOH A 67 2467 71 HOH HOH . PA 6 HOH A 68 2468 72 HOH HOH . PA 6 HOH A 69 2469 73 HOH HOH . PA 6 HOH A 70 2470 74 HOH HOH . PA 6 HOH A 71 2471 75 HOH HOH . PA 6 HOH A 72 2472 76 HOH HOH . PA 6 HOH A 73 2473 77 HOH HOH . PA 6 HOH A 74 2474 78 HOH HOH . PA 6 HOH A 75 2475 79 HOH HOH . PA 6 HOH A 76 2476 80 HOH HOH . PA 6 HOH A 77 2477 81 HOH HOH . PA 6 HOH A 78 2478 82 HOH HOH . PA 6 HOH A 79 2479 83 HOH HOH . PA 6 HOH A 80 2480 84 HOH HOH . PA 6 HOH A 81 2481 85 HOH HOH . PA 6 HOH A 82 2482 86 HOH HOH . PA 6 HOH A 83 2483 87 HOH HOH . PA 6 HOH A 84 2484 88 HOH HOH . PA 6 HOH A 85 2485 89 HOH HOH . PA 6 HOH A 86 2486 90 HOH HOH . PA 6 HOH A 87 2487 91 HOH HOH . PA 6 HOH A 88 2488 92 HOH HOH . PA 6 HOH A 89 2489 94 HOH HOH . PA 6 HOH A 90 2490 95 HOH HOH . PA 6 HOH A 91 2491 96 HOH HOH . PA 6 HOH A 92 2492 97 HOH HOH . PA 6 HOH A 93 2493 98 HOH HOH . PA 6 HOH A 94 2494 99 HOH HOH . PA 6 HOH A 95 2495 100 HOH HOH . PA 6 HOH A 96 2496 101 HOH HOH . PA 6 HOH A 97 2497 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 101.187 21.641 -7.359 1 98.4 ? C1 NAG 2312 A 1 HETATM 2 C C2 NAG . . . I 4 100.199 21.556 -8.519 1 105.47 ? C2 NAG 2312 A 1 HETATM 3 C C3 NAG . . . I 4 99.981 20.107 -8.941 1 112.49 ? C3 NAG 2312 A 1 HETATM 4 C C4 NAG . . . I 4 101.317 19.421 -9.192 1 114.59 ? C4 NAG 2312 A 1 HETATM 5 C C5 NAG . . . I 4 102.254 19.617 -8.004 1 113.26 ? C5 NAG 2312 A 1 HETATM 6 C C6 NAG . . . I 4 103.627 19.015 -8.287 1 112.76 ? C6 NAG 2312 A 1 HETATM 7 C C7 NAG . . . I 4 98.149 21.923 -7.172 1 98.84 ? C7 NAG 2312 A 1 HETATM 8 C C8 NAG . . . I 4 96.99 22.851 -6.959 1 100.36 ? C8 NAG 2312 A 1 HETATM 9 N N2 NAG . . . I 4 98.938 22.215 -8.208 1 101.11 ? N2 NAG 2312 A 1 HETATM 10 O O3 NAG . . . I 4 99.198 20.069 -10.112 1 114.73 ? O3 NAG 2312 A 1 HETATM 11 O O4 NAG . . . I 4 101.101 18.043 -9.399 1 114.46 ? O4 NAG 2312 A 1 HETATM 12 O O5 NAG . . . I 4 102.398 20.99 -7.692 1 108.79 ? O5 NAG 2312 A 1 HETATM 13 O O6 NAG . . . I 4 104.204 19.644 -9.409 1 112.89 ? O6 NAG 2312 A 1 HETATM 14 O O7 NAG . . . I 4 98.31 20.967 -6.413 1 95.04 ? O7 NAG 2312 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #