data_4OIA # _model_server_result.job_id NM2M8eMF4h8Bnefetqt_ng _model_server_result.datetime_utc '2025-01-02 19:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2314}' # _entry.id 4OIA # _exptl.entry_id 4OIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OIA _cell.length_a 96.07 _cell.length_b 96.07 _cell.length_c 321.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M,N,O,P 1 1 B,H,I,J,K,L,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2301 NAG 2 n C NAG 2 C 2 NAG A 2302 NAG 2 n D NAG 1 D 1 NAG A 4301 NAG 2 n D NAG 2 D 2 NAG A 4302 NAG 3 n E NAG 1 E 1 NAG A 1061 NAG 3 n E NAG 2 E 2 NAG A 1062 NAG 3 n E BMA 3 E 3 BMA A 1063 BMA 3 n F NAG 1 F 1 NAG A 1641 NAG 3 n F NAG 2 F 2 NAG A 1642 NAG 3 n F BMA 3 F 3 BMA A 1643 BMA 2 n G NAG 1 G 1 NAG A 2721 NAG 2 n G NAG 2 G 2 NAG A 2722 NAG 2 n H NAG 1 H 1 NAG B 2301 NAG 2 n H NAG 2 H 2 NAG B 2302 NAG 2 n I NAG 1 I 1 NAG B 1061 NAG 2 n I NAG 2 I 2 NAG B 1062 NAG 2 n J NAG 1 J 1 NAG B 1641 NAG 2 n J NAG 2 J 2 NAG B 1642 NAG 3 n K NAG 1 K 1 NAG B 1831 NAG 3 n K NAG 2 K 2 NAG B 1832 NAG 3 n K BMA 3 K 3 BMA B 1833 BMA 2 n L NAG 1 L 1 NAG B 2721 NAG 2 n L NAG 2 L 2 NAG B 2722 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 111 A CYS 111 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 218 A CYS 218 1_555 A SG CYS 271 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 313 A CYS 313 1_555 A SG CYS 352 A CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 24 B CYS 24 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 28 B CYS 28 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 111 B CYS 111 1_555 B SG CYS 167 B CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 218 B CYS 218 1_555 B SG CYS 271 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 313 B CYS 313 1_555 B SG CYS 352 B CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 43 A ASN 43 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 164 A ASN 164 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 183 A ASN 183 1_555 M C1 NAG . A NAG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 272 A ASN 272 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 A ND2 ASN 285 A ASN 285 1_555 N C1 NAG . A NAG 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 366 A ASN 366 1_555 O C1 NAG . A NAG 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 B ND2 ASN 23 B ASN 23 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 B ND2 ASN 43 B ASN 43 1_555 Q C1 NAG . B NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 B ND2 ASN 106 B ASN 106 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 B ND2 ASN 164 B ASN 164 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 B ND2 ASN 183 B ASN 183 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 B ND2 ASN 272 B ASN 272 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 B ND2 ASN 285 B ASN 285 1_555 R C1 NAG . B NAG 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 B ND2 ASN 366 B ASN 366 1_555 S C1 NAG . B NAG 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale18 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale19 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale20 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale21 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale23 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale25 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale26 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale27 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale28 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale29 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 268 n n C1 O1 NAG sing 269 n n C1 O5 NAG sing 270 n n C1 H1 NAG sing 271 n n C2 C3 NAG sing 272 n n C2 N2 NAG sing 273 n n C2 H2 NAG sing 274 n n C3 C4 NAG sing 275 n n C3 O3 NAG sing 276 n n C3 H3 NAG sing 277 n n C4 C5 NAG sing 278 n n C4 O4 NAG sing 279 n n C4 H4 NAG sing 280 n n C5 C6 NAG sing 281 n n C5 O5 NAG sing 282 n n C5 H5 NAG sing 283 n n C6 O6 NAG sing 284 n n C6 H61 NAG sing 285 n n C6 H62 NAG sing 286 n n C7 C8 NAG sing 287 n n C7 N2 NAG sing 288 n n C7 O7 NAG doub 289 n n C8 H81 NAG sing 290 n n C8 H82 NAG sing 291 n n C8 H83 NAG sing 292 n n N2 HN2 NAG sing 293 n n O1 HO1 NAG sing 294 n n O3 HO3 NAG sing 295 n n O4 HO4 NAG sing 296 n n O6 HO6 NAG sing 297 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OIA _atom_sites.fract_transf_matrix[1][1] 0.010409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 NAG A 1 2311 1831 NAG NAG . N 4 NAG A 1 2314 2851 NAG NAG . O 4 NAG A 1 2315 3661 NAG NAG . P 5 EDO A 1 2316 1 EDO EDO . Q 4 NAG B 1 2303 4301 NAG NAG . R 4 NAG B 1 2313 2851 NAG NAG . S 4 NAG B 1 2314 3661 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 4 44.056 41.615 -33.094 1 189.86 ? C1 NAG 2314 A 1 HETATM 2 C C2 NAG . . . N 4 45.481 41.207 -32.729 1 205.13 ? C2 NAG 2314 A 1 HETATM 3 C C3 NAG . . . N 4 46.084 42.217 -31.756 1 195.14 ? C3 NAG 2314 A 1 HETATM 4 C C4 NAG . . . N 4 45.979 43.628 -32.321 1 211.27 ? C4 NAG 2314 A 1 HETATM 5 C C5 NAG . . . N 4 44.534 43.933 -32.709 1 230.7 ? C5 NAG 2314 A 1 HETATM 6 C C6 NAG . . . N 4 44.375 45.274 -33.388 1 191.43 ? C6 NAG 2314 A 1 HETATM 7 C C7 NAG . . . N 4 46.522 39.015 -32.368 1 212.26 ? C7 NAG 2314 A 1 HETATM 8 C C8 NAG . . . N 4 46.392 37.675 -31.709 1 197.19 ? C8 NAG 2314 A 1 HETATM 9 N N2 NAG . . . N 4 45.514 39.869 -32.164 1 217.97 ? N2 NAG 2314 A 1 HETATM 10 O O3 NAG . . . N 4 47.449 41.891 -31.515 1 157.53 ? O3 NAG 2314 A 1 HETATM 11 O O4 NAG . . . N 4 46.419 44.574 -31.353 1 171.43 ? O4 NAG 2314 A 1 HETATM 12 O O5 NAG . . . N 4 44.057 42.942 -33.631 1 234.59 ? O5 NAG 2314 A 1 HETATM 13 O O6 NAG . . . N 4 43.009 45.576 -33.638 1 127.91 ? O6 NAG 2314 A 1 HETATM 14 O O7 NAG . . . N 4 47.497 39.312 -33.053 1 202.44 ? O7 NAG 2314 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #