data_4OIT # _model_server_result.job_id 9f2cbmvapHsrY_bKvUtJLg _model_server_result.datetime_utc '2024-10-10 06:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 4OIT # _exptl.entry_id 4OIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.98 _cell.angle_gamma 90 _cell.entry_id 4OIT _cell.length_a 47.03 _cell.length_b 80.08 _cell.length_c 56.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,P,Q 1 1 C,D,J,K,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 208 n n C1 O1 MAN sing 209 n n C1 O5 MAN sing 210 n n C1 H1 MAN sing 211 n n C2 C3 MAN sing 212 n n C2 O2 MAN sing 213 n n C2 H2 MAN sing 214 n n C3 C4 MAN sing 215 n n C3 O3 MAN sing 216 n n C3 H3 MAN sing 217 n n C4 C5 MAN sing 218 n n C4 O4 MAN sing 219 n n C4 H4 MAN sing 220 n n C5 C6 MAN sing 221 n n C5 O5 MAN sing 222 n n C5 H5 MAN sing 223 n n C6 O6 MAN sing 224 n n C6 H61 MAN sing 225 n n C6 H62 MAN sing 226 n n O1 HO1 MAN sing 227 n n O2 HO2 MAN sing 228 n n O3 HO3 MAN sing 229 n n O4 HO4 MAN sing 230 n n O6 HO6 MAN sing 231 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OIT _atom_sites.fract_transf_matrix[1][1] 0.021263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006089 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MAN A 1 201 1 MAN MAN . F 2 MAN A 1 202 2 MAN MAN . G 2 MAN A 1 203 10 MAN MAN . H 2 MAN B 1 201 3 MAN MAN . I 3 BMA B 1 202 11 BMA BMA . J 2 MAN C 1 201 4 MAN MAN . K 2 MAN C 1 202 5 MAN MAN . L 2 MAN C 1 203 8 MAN MAN . M 2 MAN D 1 201 6 MAN MAN . N 2 MAN D 1 202 7 MAN MAN . O 2 MAN D 1 203 9 MAN MAN . P 4 HOH A 1 301 4 HOH HOH . P 4 HOH A 2 302 5 HOH HOH . P 4 HOH A 3 303 6 HOH HOH . P 4 HOH A 4 304 8 HOH HOH . P 4 HOH A 5 305 9 HOH HOH . P 4 HOH A 6 306 10 HOH HOH . P 4 HOH A 7 307 13 HOH HOH . P 4 HOH A 8 308 17 HOH HOH . P 4 HOH A 9 309 20 HOH HOH . P 4 HOH A 10 310 28 HOH HOH . P 4 HOH A 11 311 30 HOH HOH . P 4 HOH A 12 312 39 HOH HOH . P 4 HOH A 13 313 54 HOH HOH . P 4 HOH A 14 314 59 HOH HOH . P 4 HOH A 15 315 60 HOH HOH . P 4 HOH A 16 316 75 HOH HOH . P 4 HOH A 17 317 77 HOH HOH . P 4 HOH A 18 318 89 HOH HOH . P 4 HOH A 19 319 115 HOH HOH . P 4 HOH A 20 320 130 HOH HOH . P 4 HOH A 21 321 136 HOH HOH . P 4 HOH A 22 322 143 HOH HOH . P 4 HOH A 23 323 146 HOH HOH . P 4 HOH A 24 324 158 HOH HOH . P 4 HOH A 25 325 161 HOH HOH . P 4 HOH A 26 326 162 HOH HOH . P 4 HOH A 27 327 177 HOH HOH . P 4 HOH A 28 328 179 HOH HOH . P 4 HOH A 29 329 185 HOH HOH . P 4 HOH A 30 330 192 HOH HOH . P 4 HOH A 31 331 193 HOH HOH . P 4 HOH A 32 332 206 HOH HOH . P 4 HOH A 33 333 207 HOH HOH . P 4 HOH A 34 334 209 HOH HOH . P 4 HOH A 35 335 11 HOH HOH . Q 4 HOH B 1 301 3 HOH HOH . Q 4 HOH B 2 302 16 HOH HOH . Q 4 HOH B 3 303 18 HOH HOH . Q 4 HOH B 4 304 22 HOH HOH . Q 4 HOH B 5 305 24 HOH HOH . Q 4 HOH B 6 306 25 HOH HOH . Q 4 HOH B 7 307 34 HOH HOH . Q 4 HOH B 8 308 35 HOH HOH . Q 4 HOH B 9 309 43 HOH HOH . Q 4 HOH B 10 310 49 HOH HOH . Q 4 HOH B 11 311 55 HOH HOH . Q 4 HOH B 12 312 57 HOH HOH . Q 4 HOH B 13 313 63 HOH HOH . Q 4 HOH B 14 314 65 HOH HOH . Q 4 HOH B 15 315 74 HOH HOH . Q 4 HOH B 16 316 76 HOH HOH . Q 4 HOH B 17 317 80 HOH HOH . Q 4 HOH B 18 318 87 HOH HOH . Q 4 HOH B 19 319 97 HOH HOH . Q 4 HOH B 20 320 101 HOH HOH . Q 4 HOH B 21 321 104 HOH HOH . Q 4 HOH B 22 322 121 HOH HOH . Q 4 HOH B 23 323 122 HOH HOH . Q 4 HOH B 24 324 127 HOH HOH . Q 4 HOH B 25 325 134 HOH HOH . Q 4 HOH B 26 326 144 HOH HOH . Q 4 HOH B 27 327 151 HOH HOH . Q 4 HOH B 28 328 165 HOH HOH . Q 4 HOH B 29 329 166 HOH HOH . Q 4 HOH B 30 330 208 HOH HOH . Q 4 HOH B 31 331 210 HOH HOH . R 4 HOH C 1 301 15 HOH HOH . R 4 HOH C 2 302 26 HOH HOH . R 4 HOH C 3 303 33 HOH HOH . R 4 HOH C 4 304 38 HOH HOH . R 4 HOH C 5 305 40 HOH HOH . R 4 HOH C 6 306 41 HOH HOH . R 4 HOH C 7 307 42 HOH HOH . R 4 HOH C 8 308 48 HOH HOH . R 4 HOH C 9 309 50 HOH HOH . R 4 HOH C 10 310 56 HOH HOH . R 4 HOH C 11 311 70 HOH HOH . R 4 HOH C 12 312 72 HOH HOH . R 4 HOH C 13 313 73 HOH HOH . R 4 HOH C 14 314 81 HOH HOH . R 4 HOH C 15 315 86 HOH HOH . R 4 HOH C 16 316 91 HOH HOH . R 4 HOH C 17 317 94 HOH HOH . R 4 HOH C 18 318 95 HOH HOH . R 4 HOH C 19 319 99 HOH HOH . R 4 HOH C 20 320 103 HOH HOH . R 4 HOH C 21 321 106 HOH HOH . R 4 HOH C 22 322 111 HOH HOH . R 4 HOH C 23 323 114 HOH HOH . R 4 HOH C 24 324 124 HOH HOH . R 4 HOH C 25 325 126 HOH HOH . R 4 HOH C 26 326 139 HOH HOH . R 4 HOH C 27 327 140 HOH HOH . R 4 HOH C 28 328 147 HOH HOH . R 4 HOH C 29 329 176 HOH HOH . R 4 HOH C 30 330 178 HOH HOH . R 4 HOH C 31 331 183 HOH HOH . R 4 HOH C 32 332 201 HOH HOH . S 4 HOH D 1 301 1 HOH HOH . S 4 HOH D 2 302 7 HOH HOH . S 4 HOH D 3 303 12 HOH HOH . S 4 HOH D 4 304 21 HOH HOH . S 4 HOH D 5 305 27 HOH HOH . S 4 HOH D 6 306 29 HOH HOH . S 4 HOH D 7 307 31 HOH HOH . S 4 HOH D 8 308 32 HOH HOH . S 4 HOH D 9 309 36 HOH HOH . S 4 HOH D 10 310 45 HOH HOH . S 4 HOH D 11 311 52 HOH HOH . S 4 HOH D 12 312 53 HOH HOH . S 4 HOH D 13 313 61 HOH HOH . S 4 HOH D 14 314 67 HOH HOH . S 4 HOH D 15 315 69 HOH HOH . S 4 HOH D 16 316 71 HOH HOH . S 4 HOH D 17 317 88 HOH HOH . S 4 HOH D 18 318 96 HOH HOH . S 4 HOH D 19 319 98 HOH HOH . S 4 HOH D 20 320 110 HOH HOH . S 4 HOH D 21 321 116 HOH HOH . S 4 HOH D 22 322 129 HOH HOH . S 4 HOH D 23 323 135 HOH HOH . S 4 HOH D 24 324 137 HOH HOH . S 4 HOH D 25 325 148 HOH HOH . S 4 HOH D 26 326 153 HOH HOH . S 4 HOH D 27 327 154 HOH HOH . S 4 HOH D 28 328 164 HOH HOH . S 4 HOH D 29 329 174 HOH HOH . S 4 HOH D 30 330 182 HOH HOH . S 4 HOH D 31 331 203 HOH HOH . S 4 HOH D 32 332 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . G 2 -25.261 -30.789 34.049 1 32.19 ? C1 MAN 203 A 1 HETATM 2 C C2 MAN . . . G 2 -25.314 -29.656 35.07 1 32.11 ? C2 MAN 203 A 1 HETATM 3 C C3 MAN . . . G 2 -26.135 -28.463 34.586 1 31.92 ? C3 MAN 203 A 1 HETATM 4 C C4 MAN . . . G 2 -25.814 -28.055 33.155 1 31.99 ? C4 MAN 203 A 1 HETATM 5 C C5 MAN . . . G 2 -25.712 -29.268 32.239 1 32.2 ? C5 MAN 203 A 1 HETATM 6 C C6 MAN . . . G 2 -25.077 -28.848 30.92 1 32.42 ? C6 MAN 203 A 1 HETATM 7 O O1 MAN . . . G 2 -26.499 -31.477 33.958 1 32.34 ? O1 MAN 203 A 1 HETATM 8 O O2 MAN . . . G 2 -23.992 -29.243 35.341 1 32.12 ? O2 MAN 203 A 1 HETATM 9 O O3 MAN . . . G 2 -25.953 -27.359 35.448 1 31.14 ? O3 MAN 203 A 1 HETATM 10 O O4 MAN . . . G 2 -26.834 -27.195 32.689 1 31.68 ? O4 MAN 203 A 1 HETATM 11 O O5 MAN . . . G 2 -24.881 -30.274 32.79 1 32.11 ? O5 MAN 203 A 1 HETATM 12 O O6 MAN . . . G 2 -25.093 -29.93 30.015 1 32.28 ? O6 MAN 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #