data_4OIZ # _model_server_result.job_id LK2wQyzbRguvAT1bNycc_Q _model_server_result.datetime_utc '2024-10-10 02:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 4OIZ # _exptl.entry_id 4OIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.69 _cell.angle_gamma 90 _cell.entry_id 4OIZ _cell.length_a 123.51 _cell.length_b 80.86 _cell.length_c 100.94 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H 1 1 C,D,I,J 2 1 E,K 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 57.700544 0 76.537567 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 201 n n C1 O1 MMA sing 202 n n C1 O5 MMA sing 203 n n C1 H1 MMA sing 204 n n C2 C3 MMA sing 205 n n C2 O2 MMA sing 206 n n C2 H2 MMA sing 207 n n C3 C4 MMA sing 208 n n C3 O3 MMA sing 209 n n C3 H3 MMA sing 210 n n C4 C5 MMA sing 211 n n C4 O4 MMA sing 212 n n C4 H4 MMA sing 213 n n C5 C6 MMA sing 214 n n C5 O5 MMA sing 215 n n C5 H5 MMA sing 216 n n C6 O6 MMA sing 217 n n C6 H61 MMA sing 218 n n C6 H62 MMA sing 219 n n C7 O1 MMA sing 220 n n C7 H71 MMA sing 221 n n C7 H72 MMA sing 222 n n C7 H73 MMA sing 223 n n O2 HO2 MMA sing 224 n n O3 HO3 MMA sing 225 n n O4 HO4 MMA sing 226 n n O6 HO6 MMA sing 227 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 4OIZ _atom_sites.fract_transf_matrix[1][1] 0.008097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006962 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MMA B 1 201 1 MMA MMA . G 2 MMA B 1 202 2 MMA MMA . H 2 MMA B 1 203 3 MMA MMA . I 2 MMA C 1 201 4 MMA MMA . J 2 MMA C 1 202 5 MMA MMA . K 2 MMA E 1 201 6 MMA MMA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . I 2 -13.26 -9.17 27.058 1 59.25 ? C1 MMA 201 C 1 HETATM 2 C C2 MMA . . . I 2 -14.746 -9.36 26.76 1 59.29 ? C2 MMA 201 C 1 HETATM 3 C C3 MMA . . . I 2 -15.273 -10.608 27.461 1 58.61 ? C3 MMA 201 C 1 HETATM 4 C C4 MMA . . . I 2 -14.426 -11.81 27.054 1 57.97 ? C4 MMA 201 C 1 HETATM 5 C C5 MMA . . . I 2 -12.974 -11.541 27.433 1 58.15 ? C5 MMA 201 C 1 HETATM 6 C C6 MMA . . . I 2 -12.077 -12.731 27.097 1 58.06 ? C6 MMA 201 C 1 HETATM 7 C C7 MMA . . . I 2 -13.275 -7.45 28.733 1 59.63 ? C7 MMA 201 C 1 HETATM 8 O O1 MMA . . . I 2 -13.086 -8.835 28.438 1 59.34 ? O1 MMA 201 C 1 HETATM 9 O O2 MMA . . . I 2 -14.933 -9.472 25.342 1 60.75 ? O2 MMA 201 C 1 HETATM 10 O O3 MMA . . . I 2 -16.649 -10.813 27.128 1 59.04 ? O3 MMA 201 C 1 HETATM 11 O O4 MMA . . . I 2 -14.9 -12.994 27.701 1 57.56 ? O4 MMA 201 C 1 HETATM 12 O O5 MMA . . . I 2 -12.527 -10.366 26.746 1 58.67 ? O5 MMA 201 C 1 HETATM 13 O O6 MMA . . . I 2 -10.689 -12.364 27.17 1 57.85 ? O6 MMA 201 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #