data_4OJE
#
_model_server_result.job_id            ee105eU7ExtC1TnWM5nuyw 
_model_server_result.datetime_utc      '2025-07-30 14:36:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1104}' 
#
_entry.id    4OJE 
#
_exptl.entry_id    4OJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4OJE 
_cell.length_a            106.886 
_cell.length_b            106.886 
_cell.length_c            135.62 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 53.443 -92.565991 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 106.886 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 A 1 NAG H 1101 NAG 
2 n B NAG 2 A 2 NAG H 1102 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 H CYS 40 1_555 A SG CYS 55 H CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 111 H CYS 131 1_555 A SG CYS 167 H CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 113 H CYS 133 1_555 A SG CYS 311 H CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 115 H CYS 135 1_555 A SG CYS 157 H CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf5 A SG CYS 122 H CYS 142 1_555 A SG CYS 166 H CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf6 A SG CYS 132 H CYS 152 1_555 A SG CYS 144 H CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 466 H CYS 486 1_555 A SG CYS 479 H CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
covale ? covale1 A ND2 ASN 386 H ASN 406 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 A ND2 ASN 408 H ASN 428 1_555 C C1 NAG . H NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 290 n n 
P O2 PO4 sing 291 n n 
P O3 PO4 sing 292 n n 
P O4 PO4 sing 293 n n 
#
_atom_sites.entry_id                     4OJE 
_atom_sites.fract_transf_matrix[1][1]    0.009356 
_atom_sites.fract_transf_matrix[1][2]    0.005402 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG H 1 1103 1201 NAG NAG . 
D 4 PO4 H 1 1104 1 PO4 PO4 . 
E 4 PO4 H 1 1105 2 PO4 PO4 . 
F 4 PO4 H 1 1106 3 PO4 PO4 . 
G 4 PO4 H 1 1107 4 PO4 PO4 . 
H 5 HOH H 1 1201 1 HOH HOH . 
H 5 HOH H 2 1202 2 HOH HOH . 
H 5 HOH H 3 1203 3 HOH HOH . 
H 5 HOH H 4 1204 4 HOH HOH . 
H 5 HOH H 5 1205 5 HOH HOH . 
H 5 HOH H 6 1206 6 HOH HOH . 
H 5 HOH H 7 1207 7 HOH HOH . 
H 5 HOH H 8 1208 8 HOH HOH . 
H 5 HOH H 9 1209 9 HOH HOH . 
H 5 HOH H 10 1210 10 HOH HOH . 
H 5 HOH H 11 1211 12 HOH HOH . 
H 5 HOH H 12 1212 13 HOH HOH . 
H 5 HOH H 13 1213 15 HOH HOH . 
H 5 HOH H 14 1214 16 HOH HOH . 
H 5 HOH H 15 1215 17 HOH HOH . 
H 5 HOH H 16 1216 18 HOH HOH . 
H 5 HOH H 17 1217 19 HOH HOH . 
H 5 HOH H 18 1218 20 HOH HOH . 
H 5 HOH H 19 1219 21 HOH HOH . 
H 5 HOH H 20 1220 23 HOH HOH . 
H 5 HOH H 21 1221 24 HOH HOH . 
H 5 HOH H 22 1222 25 HOH HOH . 
H 5 HOH H 23 1223 26 HOH HOH . 
H 5 HOH H 24 1224 27 HOH HOH . 
H 5 HOH H 25 1225 28 HOH HOH . 
H 5 HOH H 26 1226 29 HOH HOH . 
H 5 HOH H 27 1227 30 HOH HOH . 
H 5 HOH H 28 1228 31 HOH HOH . 
H 5 HOH H 29 1229 32 HOH HOH . 
H 5 HOH H 30 1230 33 HOH HOH . 
H 5 HOH H 31 1231 35 HOH HOH . 
H 5 HOH H 32 1232 36 HOH HOH . 
H 5 HOH H 33 1233 37 HOH HOH . 
H 5 HOH H 34 1234 38 HOH HOH . 
H 5 HOH H 35 1235 39 HOH HOH . 
H 5 HOH H 36 1236 40 HOH HOH . 
H 5 HOH H 37 1237 41 HOH HOH . 
H 5 HOH H 38 1238 42 HOH HOH . 
H 5 HOH H 39 1239 43 HOH HOH . 
H 5 HOH H 40 1240 44 HOH HOH . 
H 5 HOH H 41 1241 45 HOH HOH . 
H 5 HOH H 42 1242 46 HOH HOH . 
H 5 HOH H 43 1243 47 HOH HOH . 
H 5 HOH H 44 1244 48 HOH HOH . 
H 5 HOH H 45 1245 49 HOH HOH . 
H 5 HOH H 46 1246 50 HOH HOH . 
H 5 HOH H 47 1247 51 HOH HOH . 
H 5 HOH H 48 1248 52 HOH HOH . 
H 5 HOH H 49 1249 53 HOH HOH . 
H 5 HOH H 50 1250 54 HOH HOH . 
H 5 HOH H 51 1251 55 HOH HOH . 
H 5 HOH H 52 1252 56 HOH HOH . 
H 5 HOH H 53 1253 57 HOH HOH . 
H 5 HOH H 54 1254 58 HOH HOH . 
H 5 HOH H 55 1255 59 HOH HOH . 
H 5 HOH H 56 1256 60 HOH HOH . 
H 5 HOH H 57 1257 61 HOH HOH . 
H 5 HOH H 58 1258 62 HOH HOH . 
H 5 HOH H 59 1259 63 HOH HOH . 
H 5 HOH H 60 1260 64 HOH HOH . 
H 5 HOH H 61 1261 65 HOH HOH . 
H 5 HOH H 62 1262 66 HOH HOH . 
H 5 HOH H 63 1263 67 HOH HOH . 
H 5 HOH H 64 1264 68 HOH HOH . 
H 5 HOH H 65 1265 69 HOH HOH . 
H 5 HOH H 66 1266 70 HOH HOH . 
H 5 HOH H 67 1267 71 HOH HOH . 
H 5 HOH H 68 1268 72 HOH HOH . 
H 5 HOH H 69 1269 73 HOH HOH . 
H 5 HOH H 70 1270 74 HOH HOH . 
H 5 HOH H 71 1271 75 HOH HOH . 
H 5 HOH H 72 1272 76 HOH HOH . 
H 5 HOH H 73 1273 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 4 53.202 -30.479 -30.177 0.33 32.36 ? P PO4 1104 H 1 
HETATM 2 O O1 PO4 . . . D 4 54.741 -30.377 -30.323 0.33 32.87 ? O1 PO4 1104 H 1 
HETATM 3 O O2 PO4 . . . D 4 52.554 -29.173 -30.696 0.33 32.94 ? O2 PO4 1104 H 1 
HETATM 4 O O3 PO4 . . . D 4 52.672 -31.679 -31.013 0.33 32.71 ? O3 PO4 1104 H 1 
HETATM 5 O O4 PO4 . . . D 4 52.839 -30.679 -28.694 0.33 28.51 ? O4 PO4 1104 H 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           1357 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#