data_4OK3 # _model_server_result.job_id D2ObSGZdd6jgrJE_AtLGGQ _model_server_result.datetime_utc '2024-11-22 09:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ok3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4OK3 # _exptl.entry_id 4OK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.752 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-(3-chlorobenzyl)-1H-indol-3-yl]acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OK3 _cell.length_a 81.394 _cell.length_b 104.232 _cell.length_c 117.954 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 271 A ASP 437 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD1 ASP 271 A ASP 437 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 A OD2 ASP 271 A ASP 437 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc4 A OE2 GLU 281 A GLU 447 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 D CA CA . A CA 702 1_555 F O HOH . A HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc6 D CA CA . A CA 702 1_555 B OD2 ASP 271 B ASP 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc7 D CA CA . A CA 702 1_555 G O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc8 D CA CA . A CA 702 1_555 G O HOH . B HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc9 D CA CA . A CA 702 1_555 G O HOH . B HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 E CA CA . A CA 703 1_555 F O HOH . A HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc11 E CA CA . A CA 703 1_555 B OD1 ASP 271 B ASP 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 E CA CA . A CA 703 1_555 B OD2 ASP 271 B ASP 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? # _chem_comp.formula 'C17 H14 Cl N O2' _chem_comp.formula_weight 299.752 _chem_comp.id 2SY _chem_comp.mon_nstd_flag . _chem_comp.name '[1-(3-chlorobenzyl)-1H-indol-3-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C17 2SY doub 1 n y C20 C16 2SY sing 2 n y C17 C14 2SY sing 3 n y CL2 C16 2SY sing 4 n n C16 C13 2SY doub 5 n y C14 C10 2SY doub 6 n y C13 C10 2SY sing 7 n y C10 C6 2SY sing 8 n n C6 N2 2SY sing 9 n n N2 C5 2SY sing 10 n y N2 C1 2SY sing 11 n y C5 C7 2SY doub 12 n y C1 C4 2SY doub 13 n y C1 C3 2SY sing 14 n y C4 C9 2SY sing 15 n y C7 C3 2SY sing 16 n y C7 C11 2SY sing 17 n n C3 C8 2SY doub 18 n y C9 C12 2SY doub 19 n y C11 C15 2SY sing 20 n n C8 C12 2SY sing 21 n y O19 C15 2SY doub 22 n n C15 O18 2SY sing 23 n n C13 H1 2SY sing 24 n n C20 H2 2SY sing 25 n n C17 H3 2SY sing 26 n n C14 H4 2SY sing 27 n n C6 H5 2SY sing 28 n n C6 H6 2SY sing 29 n n C5 H7 2SY sing 30 n n C11 H8 2SY sing 31 n n C11 H9 2SY sing 32 n n O18 H10 2SY sing 33 n n C8 H11 2SY sing 34 n n C12 H12 2SY sing 35 n n C9 H13 2SY sing 36 n n C4 H14 2SY sing 37 n n # _atom_sites.entry_id 4OK3 _atom_sites.fract_transf_matrix[1][1] 0.012286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2SY A 1 701 999 2SY 81 . D 3 CA A 1 702 1001 CA CA . E 3 CA A 1 703 1002 CA CA . F 4 HOH A 1 801 2 HOH HOH . F 4 HOH A 2 802 4 HOH HOH . F 4 HOH A 3 803 5 HOH HOH . F 4 HOH A 4 804 6 HOH HOH . F 4 HOH A 5 805 10 HOH HOH . F 4 HOH A 6 806 11 HOH HOH . F 4 HOH A 7 807 12 HOH HOH . F 4 HOH A 8 808 17 HOH HOH . F 4 HOH A 9 809 20 HOH HOH . F 4 HOH A 10 810 22 HOH HOH . F 4 HOH A 11 811 23 HOH HOH . F 4 HOH A 12 812 26 HOH HOH . F 4 HOH A 13 813 35 HOH HOH . F 4 HOH A 14 814 36 HOH HOH . F 4 HOH A 15 815 39 HOH HOH . F 4 HOH A 16 816 42 HOH HOH . F 4 HOH A 17 817 44 HOH HOH . F 4 HOH A 18 818 45 HOH HOH . F 4 HOH A 19 819 46 HOH HOH . F 4 HOH A 20 820 47 HOH HOH . F 4 HOH A 21 821 48 HOH HOH . F 4 HOH A 22 822 49 HOH HOH . F 4 HOH A 23 823 53 HOH HOH . F 4 HOH A 24 824 54 HOH HOH . F 4 HOH A 25 825 55 HOH HOH . F 4 HOH A 26 826 56 HOH HOH . F 4 HOH A 27 827 57 HOH HOH . F 4 HOH A 28 828 58 HOH HOH . F 4 HOH A 29 829 62 HOH HOH . F 4 HOH A 30 830 64 HOH HOH . F 4 HOH A 31 831 70 HOH HOH . F 4 HOH A 32 832 71 HOH HOH . F 4 HOH A 33 833 73 HOH HOH . F 4 HOH A 34 834 74 HOH HOH . F 4 HOH A 35 835 75 HOH HOH . F 4 HOH A 36 836 77 HOH HOH . F 4 HOH A 37 837 81 HOH HOH . F 4 HOH A 38 838 84 HOH HOH . F 4 HOH A 39 839 89 HOH HOH . F 4 HOH A 40 840 91 HOH HOH . F 4 HOH A 41 841 93 HOH HOH . F 4 HOH A 42 842 98 HOH HOH . F 4 HOH A 43 843 100 HOH HOH . F 4 HOH A 44 844 1 HOH HOH . F 4 HOH A 45 845 7 HOH HOH . F 4 HOH A 46 846 8 HOH HOH . G 4 HOH B 1 701 1 HOH HOH . G 4 HOH B 2 702 7 HOH HOH . G 4 HOH B 3 703 8 HOH HOH . G 4 HOH B 4 704 9 HOH HOH . G 4 HOH B 5 705 13 HOH HOH . G 4 HOH B 6 706 14 HOH HOH . G 4 HOH B 7 707 15 HOH HOH . G 4 HOH B 8 708 16 HOH HOH . G 4 HOH B 9 709 18 HOH HOH . G 4 HOH B 10 710 19 HOH HOH . G 4 HOH B 11 711 21 HOH HOH . G 4 HOH B 12 712 24 HOH HOH . G 4 HOH B 13 713 25 HOH HOH . G 4 HOH B 14 714 27 HOH HOH . G 4 HOH B 15 715 28 HOH HOH . G 4 HOH B 16 716 29 HOH HOH . G 4 HOH B 17 717 30 HOH HOH . G 4 HOH B 18 718 31 HOH HOH . G 4 HOH B 19 719 33 HOH HOH . G 4 HOH B 20 720 34 HOH HOH . G 4 HOH B 21 721 37 HOH HOH . G 4 HOH B 22 722 38 HOH HOH . G 4 HOH B 23 723 40 HOH HOH . G 4 HOH B 24 724 41 HOH HOH . G 4 HOH B 25 725 43 HOH HOH . G 4 HOH B 26 726 51 HOH HOH . G 4 HOH B 27 727 52 HOH HOH . G 4 HOH B 28 728 59 HOH HOH . G 4 HOH B 29 729 60 HOH HOH . G 4 HOH B 30 730 61 HOH HOH . G 4 HOH B 31 731 63 HOH HOH . G 4 HOH B 32 732 65 HOH HOH . G 4 HOH B 33 733 66 HOH HOH . G 4 HOH B 34 734 67 HOH HOH . G 4 HOH B 35 735 68 HOH HOH . G 4 HOH B 36 736 69 HOH HOH . G 4 HOH B 37 737 72 HOH HOH . G 4 HOH B 38 738 76 HOH HOH . G 4 HOH B 39 739 78 HOH HOH . G 4 HOH B 40 740 79 HOH HOH . G 4 HOH B 41 741 82 HOH HOH . G 4 HOH B 42 742 83 HOH HOH . G 4 HOH B 43 743 85 HOH HOH . G 4 HOH B 44 744 86 HOH HOH . G 4 HOH B 45 745 87 HOH HOH . G 4 HOH B 46 746 88 HOH HOH . G 4 HOH B 47 747 92 HOH HOH . G 4 HOH B 48 748 94 HOH HOH . G 4 HOH B 49 749 95 HOH HOH . G 4 HOH B 50 750 96 HOH HOH . G 4 HOH B 51 751 97 HOH HOH . G 4 HOH B 52 752 99 HOH HOH . G 4 HOH B 53 753 101 HOH HOH . G 4 HOH B 54 754 2 HOH HOH . G 4 HOH B 55 755 3 HOH HOH . G 4 HOH B 56 756 4 HOH HOH . G 4 HOH B 57 757 5 HOH HOH . G 4 HOH B 58 758 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 2SY . . . C 2 -21.626 -28.671 27.916 1 59.84 ? CL2 2SY 701 A 1 HETATM 2 C C16 2SY . . . C 2 -20.266 -29.791 28.004 1 51.84 ? C16 2SY 701 A 1 HETATM 3 C C13 2SY . . . C 2 -20.183 -30.704 29.049 1 48.78 ? C13 2SY 701 A 1 HETATM 4 C C20 2SY . . . C 2 -19.263 -29.775 27.038 1 51.96 ? C20 2SY 701 A 1 HETATM 5 C C17 2SY . . . C 2 -18.204 -30.66 27.116 1 47.15 ? C17 2SY 701 A 1 HETATM 6 C C14 2SY . . . C 2 -18.122 -31.563 28.163 1 49.03 ? C14 2SY 701 A 1 HETATM 7 C C10 2SY . . . C 2 -19.117 -31.582 29.135 1 56.18 ? C10 2SY 701 A 1 HETATM 8 C C6 2SY . . . C 2 -19.054 -32.592 30.254 1 49.02 ? C6 2SY 701 A 1 HETATM 9 N N2 2SY . . . C 2 -18.916 -32.102 31.638 1 54.26 ? N2 2SY 701 A 1 HETATM 10 C C5 2SY . . . C 2 -18.045 -31.151 32.124 1 46.79 ? C5 2SY 701 A 1 HETATM 11 C C7 2SY . . . C 2 -18.211 -31.034 33.457 1 46.06 ? C7 2SY 701 A 1 HETATM 12 C C11 2SY . . . C 2 -17.512 -30.09 34.395 1 46.97 ? C11 2SY 701 A 1 HETATM 13 C C15 2SY . . . C 2 -16.739 -30.834 35.454 1 55.34 ? C15 2SY 701 A 1 HETATM 14 O O19 2SY . . . C 2 -15.97 -31.711 35.121 1 58.66 ? O19 2SY 701 A 1 HETATM 15 O O18 2SY . . . C 2 -16.89 -30.511 36.758 1 57 ? O18 2SY 701 A 1 HETATM 16 C C3 2SY . . . C 2 -19.238 -32.001 33.855 1 49.61 ? C3 2SY 701 A 1 HETATM 17 C C1 2SY . . . C 2 -19.634 -32.651 32.681 1 42.82 ? C1 2SY 701 A 1 HETATM 18 C C8 2SY . . . C 2 -19.825 -32.346 35.077 1 51.76 ? C8 2SY 701 A 1 HETATM 19 C C12 2SY . . . C 2 -20.778 -33.32 35.119 1 55 ? C12 2SY 701 A 1 HETATM 20 C C9 2SY . . . C 2 -21.18 -33.972 33.953 1 51.36 ? C9 2SY 701 A 1 HETATM 21 C C4 2SY . . . C 2 -20.608 -33.637 32.743 1 46.04 ? C4 2SY 701 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 647 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #