data_4OKU # _model_server_result.job_id VLlVn1P4XJ9M9gLg4gEJ1A _model_server_result.datetime_utc '2024-11-28 06:49:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4OKU # _exptl.entry_id 4OKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OKU _cell.length_a 87.434 _cell.length_b 159.321 _cell.length_c 41.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 A,C 3 1 B,D 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_554 x+1/2,-y+1/2,-z-1 1 0 0 0 -1 0 0 0 -1 43.717 79.6605 -41.305 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 71 1_555 A SG CYS 235 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 49 A CYS 78 1_555 A SG CYS 135 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 244 A CYS 273 1_555 A SG CYS 290 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 253 A CYS 282 1_555 A SG CYS 302 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 279 A CYS 308 1_555 A SG CYS 282 A CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 42 B CYS 71 1_555 B SG CYS 235 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 49 B CYS 78 1_555 B SG CYS 135 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 244 B CYS 273 1_555 B SG CYS 290 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 253 B CYS 282 1_555 B SG CYS 302 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 279 B CYS 308 1_555 B SG CYS 282 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A CD1 TRP 247 A TRP 276 1_555 C C1 MAN . A MAN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale2 B CD1 TRP 247 B TRP 276 1_555 D C1 MAN . B MAN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 216 n n C1 O1 MAN sing 217 n n C1 O5 MAN sing 218 n n C1 H1 MAN sing 219 n n C2 C3 MAN sing 220 n n C2 O2 MAN sing 221 n n C2 H2 MAN sing 222 n n C3 C4 MAN sing 223 n n C3 O3 MAN sing 224 n n C3 H3 MAN sing 225 n n C4 C5 MAN sing 226 n n C4 O4 MAN sing 227 n n C4 H4 MAN sing 228 n n C5 C6 MAN sing 229 n n C5 O5 MAN sing 230 n n C5 H5 MAN sing 231 n n C6 O6 MAN sing 232 n n C6 H61 MAN sing 233 n n C6 H62 MAN sing 234 n n O1 HO1 MAN sing 235 n n O2 HO2 MAN sing 236 n n O3 HO3 MAN sing 237 n n O4 HO4 MAN sing 238 n n O6 HO6 MAN sing 239 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OKU _atom_sites.fract_transf_matrix[1][1] 0.011437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MAN A 1 401 1276 MAN MAN . D 2 MAN B 1 401 1276 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 2 -23.712 54.327 -3.912 0.5 86.57 ? C1 MAN 401 B 1 HETATM 2 C C2 MAN . . . D 2 -22.739 53.228 -4.358 0.5 81.52 ? C2 MAN 401 B 1 HETATM 3 C C3 MAN . . . D 2 -21.61 53.047 -3.336 0.5 78.48 ? C3 MAN 401 B 1 HETATM 4 C C4 MAN . . . D 2 -22.12 52.979 -1.873 0.5 76.7 ? C4 MAN 401 B 1 HETATM 5 C C5 MAN . . . D 2 -23.158 54.087 -1.563 0.5 78.06 ? C5 MAN 401 B 1 HETATM 6 C C6 MAN . . . D 2 -22.544 55.47 -1.385 0.5 78.26 ? C6 MAN 401 B 1 HETATM 7 O O2 MAN . . . D 2 -22.088 53.576 -5.58 0.5 80.01 ? O2 MAN 401 B 1 HETATM 8 O O3 MAN . . . D 2 -20.598 54.047 -3.478 0.5 78.09 ? O3 MAN 401 B 1 HETATM 9 O O4 MAN . . . D 2 -22.685 51.699 -1.61 0.5 77.42 ? O4 MAN 401 B 1 HETATM 10 O O5 MAN . . . D 2 -24.174 54.157 -2.6 0.5 81.72 ? O5 MAN 401 B 1 HETATM 11 O O6 MAN . . . D 2 -23.421 56.246 -0.573 0.5 80.75 ? O6 MAN 401 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #