data_4OLF # _model_server_result.job_id a36mzbI4S19BSHsRyC4o0w _model_server_result.datetime_utc '2024-10-11 02:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4olf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4OLF # _exptl.entry_id 4OLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OLF _cell.length_a 106.55 _cell.length_b 106.55 _cell.length_c 186.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 506 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 746 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id S _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 818 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.173 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4OLF _atom_sites.fract_transf_matrix[1][1] 0.009385 _atom_sites.fract_transf_matrix[1][2] 0.005419 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 801 1 ANP ANP . C 3 HFG A 1 802 1 HFG HFG . D 4 SO4 A 1 803 1 SO4 SO4 . E 4 SO4 A 1 804 3 SO4 SO4 . F 4 SO4 A 1 805 4 SO4 SO4 . G 4 SO4 A 1 806 6 SO4 SO4 . H 4 SO4 A 1 807 7 SO4 SO4 . I 4 SO4 A 1 808 8 SO4 SO4 . J 4 SO4 A 1 809 9 SO4 SO4 . K 4 SO4 A 1 810 10 SO4 SO4 . L 4 SO4 A 1 811 11 SO4 SO4 . M 4 SO4 A 1 812 12 SO4 SO4 . N 4 SO4 A 1 813 13 SO4 SO4 . O 4 SO4 A 1 814 14 SO4 SO4 . P 4 SO4 A 1 815 15 SO4 SO4 . Q 4 SO4 A 1 816 16 SO4 SO4 . R 4 SO4 A 1 817 17 SO4 SO4 . S 5 NA A 1 818 1 NA NA . T 6 EDO A 1 819 1 EDO EDO . U 7 HOH A 1 901 12 HOH HOH . U 7 HOH A 2 902 14 HOH HOH . U 7 HOH A 3 903 16 HOH HOH . U 7 HOH A 4 904 17 HOH HOH . U 7 HOH A 5 905 18 HOH HOH . U 7 HOH A 6 906 19 HOH HOH . U 7 HOH A 7 907 20 HOH HOH . U 7 HOH A 8 908 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 24.126 49.452 20.203 1 116.39 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . B 2 23.1 48.398 20.581 1 108.88 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . B 2 25.459 48.738 20.132 1 102.9 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . B 2 24.266 50.617 21.179 1 112.68 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . B 2 22.196 50.87 17.829 1 82.1 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . B 2 20.946 50.676 18.675 1 79.51 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . B 2 22.494 52.248 17.307 1 71.45 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . B 2 23.721 50.19 18.578 1 96.29 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . B 2 20.444 49.887 15.778 1 72.22 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . B 2 20.834 49.726 14.342 1 70.59 ? O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . B 2 19.417 50.865 16.31 1 77.98 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . B 2 21.881 50.135 16.437 1 74.03 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . B 2 19.926 48.453 16.264 1 78.48 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . B 2 19.733 47.335 15.385 1 78.79 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . B 2 20.672 46.171 15.722 1 78.32 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . B 2 21.97 46.457 15.197 1 76.31 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . B 2 20.871 45.903 17.215 1 77.31 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . B 2 20.405 44.607 17.602 1 73.36 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . B 2 22.363 45.982 17.438 1 74.17 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . B 2 22.754 44.835 18.16 1 83.9 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . B 2 22.983 45.932 16.061 1 72.61 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . B 2 24.217 46.737 15.879 1 66.94 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . B 2 24.358 48.048 16.133 1 69.75 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . B 2 25.603 48.515 15.821 1 65.21 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . B 2 26.269 47.46 15.352 1 61.12 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . B 2 27.62 47.26 14.842 1 59.05 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . B 2 28.47 48.307 14.808 1 64.09 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . B 2 27.957 46.031 14.432 1 54.03 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . B 2 27.076 45.016 14.477 1 59.37 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . B 2 25.81 45.125 14.924 1 58.05 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . B 2 25.362 46.305 15.373 1 62.02 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #