data_4OLX # _model_server_result.job_id FhAOza6jxzEupmGVeQ8eag _model_server_result.datetime_utc '2024-11-30 23:40:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4olx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":506}' # _entry.id 4OLX # _exptl.entry_id 4OLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OLX _cell.length_a 67.442 _cell.length_b 76.036 _cell.length_c 198.158 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 245 G CYS 378 1_555 A SG CYS 306 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 252 G CYS 385 1_555 A SG CYS 279 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 262 G CYS 395 1_555 A SG CYS 271 G CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 32 H CYS 32 1_555 B SG CYS 102 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 B SG CYS 152 H CYS 140 1_555 B SG CYS 208 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 B SG CYS 228 H CYS 216 1_555 C SG CYS 210 L CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 C SG CYS 23 L CYS 23 1_555 C SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf14 C SG CYS 130 L CYS 136 1_555 C SG CYS 190 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 118 G ASN 234 1_555 D C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale2 A ND2 ASN 146 G ASN 262 1_555 E C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 160 G ASN 276 1_555 F C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 A ND2 ASN 173 G ASN 289 1_555 G C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 A ND2 ASN 179 G ASN 295 1_555 H C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 A ND2 ASN 202 G ASN 334 1_555 I C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 A ND2 ASN 253 G ASN 386 1_555 J C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale8 A ND2 ASN 309 G ASN 448 1_555 K C1 NAG . G NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OLX _atom_sites.fract_transf_matrix[1][1] 0.014828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG G 1 501 734 NAG NAG . E 4 NAG G 1 502 762 NAG NAG . F 4 NAG G 1 503 776 NAG NAG . G 4 NAG G 1 504 789 NAG NAG . H 4 NAG G 1 505 795 NAG NAG . I 4 NAG G 1 506 834 NAG NAG . J 4 NAG G 1 507 886 NAG NAG . K 4 NAG G 1 508 948 NAG NAG . L 5 HOH G 1 601 6 HOH HOH . L 5 HOH G 2 602 7 HOH HOH . L 5 HOH G 3 603 10 HOH HOH . L 5 HOH G 4 604 11 HOH HOH . L 5 HOH G 5 605 13 HOH HOH . L 5 HOH G 6 606 14 HOH HOH . L 5 HOH G 7 607 19 HOH HOH . L 5 HOH G 8 608 22 HOH HOH . L 5 HOH G 9 609 23 HOH HOH . L 5 HOH G 10 610 24 HOH HOH . L 5 HOH G 11 611 25 HOH HOH . L 5 HOH G 12 612 27 HOH HOH . L 5 HOH G 13 613 34 HOH HOH . L 5 HOH G 14 614 36 HOH HOH . L 5 HOH G 15 615 38 HOH HOH . L 5 HOH G 16 616 45 HOH HOH . L 5 HOH G 17 617 49 HOH HOH . L 5 HOH G 18 618 50 HOH HOH . L 5 HOH G 19 619 51 HOH HOH . L 5 HOH G 20 620 52 HOH HOH . L 5 HOH G 21 621 61 HOH HOH . L 5 HOH G 22 622 68 HOH HOH . L 5 HOH G 23 623 71 HOH HOH . L 5 HOH G 24 624 73 HOH HOH . L 5 HOH G 25 625 76 HOH HOH . L 5 HOH G 26 626 77 HOH HOH . L 5 HOH G 27 627 79 HOH HOH . L 5 HOH G 28 628 80 HOH HOH . L 5 HOH G 29 629 81 HOH HOH . L 5 HOH G 30 630 83 HOH HOH . L 5 HOH G 31 631 88 HOH HOH . L 5 HOH G 32 632 93 HOH HOH . L 5 HOH G 33 633 95 HOH HOH . L 5 HOH G 34 634 98 HOH HOH . L 5 HOH G 35 635 101 HOH HOH . L 5 HOH G 36 636 103 HOH HOH . L 5 HOH G 37 637 108 HOH HOH . L 5 HOH G 38 638 110 HOH HOH . L 5 HOH G 39 639 113 HOH HOH . L 5 HOH G 40 640 115 HOH HOH . L 5 HOH G 41 641 116 HOH HOH . L 5 HOH G 42 642 118 HOH HOH . L 5 HOH G 43 643 121 HOH HOH . M 5 HOH H 1 301 1 HOH HOH . M 5 HOH H 2 302 2 HOH HOH . M 5 HOH H 3 303 4 HOH HOH . M 5 HOH H 4 304 12 HOH HOH . M 5 HOH H 5 305 15 HOH HOH . M 5 HOH H 6 306 16 HOH HOH . M 5 HOH H 7 307 17 HOH HOH . M 5 HOH H 8 308 28 HOH HOH . M 5 HOH H 9 309 29 HOH HOH . M 5 HOH H 10 310 30 HOH HOH . M 5 HOH H 11 311 31 HOH HOH . M 5 HOH H 12 312 32 HOH HOH . M 5 HOH H 13 313 35 HOH HOH . M 5 HOH H 14 314 37 HOH HOH . M 5 HOH H 15 315 39 HOH HOH . M 5 HOH H 16 316 41 HOH HOH . M 5 HOH H 17 317 43 HOH HOH . M 5 HOH H 18 318 44 HOH HOH . M 5 HOH H 19 319 47 HOH HOH . M 5 HOH H 20 320 48 HOH HOH . M 5 HOH H 21 321 54 HOH HOH . M 5 HOH H 22 322 55 HOH HOH . M 5 HOH H 23 323 56 HOH HOH . M 5 HOH H 24 324 57 HOH HOH . M 5 HOH H 25 325 59 HOH HOH . M 5 HOH H 26 326 60 HOH HOH . M 5 HOH H 27 327 62 HOH HOH . M 5 HOH H 28 328 63 HOH HOH . M 5 HOH H 29 329 66 HOH HOH . M 5 HOH H 30 330 70 HOH HOH . M 5 HOH H 31 331 72 HOH HOH . M 5 HOH H 32 332 74 HOH HOH . M 5 HOH H 33 333 78 HOH HOH . M 5 HOH H 34 334 84 HOH HOH . M 5 HOH H 35 335 85 HOH HOH . M 5 HOH H 36 336 86 HOH HOH . M 5 HOH H 37 337 87 HOH HOH . M 5 HOH H 38 338 90 HOH HOH . M 5 HOH H 39 339 91 HOH HOH . M 5 HOH H 40 340 94 HOH HOH . M 5 HOH H 41 341 99 HOH HOH . M 5 HOH H 42 342 105 HOH HOH . M 5 HOH H 43 343 106 HOH HOH . M 5 HOH H 44 344 107 HOH HOH . M 5 HOH H 45 345 109 HOH HOH . M 5 HOH H 46 346 114 HOH HOH . M 5 HOH H 47 347 117 HOH HOH . N 5 HOH L 1 301 3 HOH HOH . N 5 HOH L 2 302 5 HOH HOH . N 5 HOH L 3 303 8 HOH HOH . N 5 HOH L 4 304 9 HOH HOH . N 5 HOH L 5 305 18 HOH HOH . N 5 HOH L 6 306 20 HOH HOH . N 5 HOH L 7 307 21 HOH HOH . N 5 HOH L 8 308 26 HOH HOH . N 5 HOH L 9 309 33 HOH HOH . N 5 HOH L 10 310 40 HOH HOH . N 5 HOH L 11 311 42 HOH HOH . N 5 HOH L 12 312 46 HOH HOH . N 5 HOH L 13 313 53 HOH HOH . N 5 HOH L 14 314 58 HOH HOH . N 5 HOH L 15 315 64 HOH HOH . N 5 HOH L 16 316 65 HOH HOH . N 5 HOH L 17 317 67 HOH HOH . N 5 HOH L 18 318 69 HOH HOH . N 5 HOH L 19 319 75 HOH HOH . N 5 HOH L 20 320 82 HOH HOH . N 5 HOH L 21 321 89 HOH HOH . N 5 HOH L 22 322 92 HOH HOH . N 5 HOH L 23 323 96 HOH HOH . N 5 HOH L 24 324 97 HOH HOH . N 5 HOH L 25 325 100 HOH HOH . N 5 HOH L 26 326 102 HOH HOH . N 5 HOH L 27 327 104 HOH HOH . N 5 HOH L 28 328 111 HOH HOH . N 5 HOH L 29 329 112 HOH HOH . N 5 HOH L 30 330 119 HOH HOH . N 5 HOH L 31 331 120 HOH HOH . N 5 HOH L 32 332 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 5.833 -9.584 -7.712 1 81.88 ? C1 NAG 506 G 1 HETATM 2 C C2 NAG . . . I 4 5.383 -9.788 -9.172 1 98.4 ? C2 NAG 506 G 1 HETATM 3 C C3 NAG . . . I 4 5.107 -11.266 -9.46 1 103.97 ? C3 NAG 506 G 1 HETATM 4 C C4 NAG . . . I 4 6.286 -12.13 -9.042 1 102.93 ? C4 NAG 506 G 1 HETATM 5 C C5 NAG . . . I 4 6.577 -11.886 -7.571 1 96.08 ? C5 NAG 506 G 1 HETATM 6 C C6 NAG . . . I 4 7.752 -12.684 -7.059 1 93.32 ? C6 NAG 506 G 1 HETATM 7 C C7 NAG . . . I 4 4.148 -8.07 -10.426 1 114.7 ? C7 NAG 506 G 1 HETATM 8 C C8 NAG . . . I 4 2.843 -7.345 -10.572 1 115.7 ? C8 NAG 506 G 1 HETATM 9 N N2 NAG . . . I 4 4.201 -8.99 -9.457 1 109.72 ? N2 NAG 506 G 1 HETATM 10 O O3 NAG . . . I 4 4.85 -11.439 -10.849 1 109.19 ? O3 NAG 506 G 1 HETATM 11 O O4 NAG . . . I 4 5.987 -13.507 -9.24 1 105.67 ? O4 NAG 506 G 1 HETATM 12 O O5 NAG . . . I 4 6.903 -10.502 -7.392 1 91.84 ? O5 NAG 506 G 1 HETATM 13 O O6 NAG . . . I 4 7.968 -12.454 -5.674 1 93.13 ? O6 NAG 506 G 1 HETATM 14 O O7 NAG . . . I 4 5.11 -7.832 -11.149 1 116.18 ? O7 NAG 506 G 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #