data_4OMG # _model_server_result.job_id OuLfbgAOlZQ0r419WUCjHQ _model_server_result.datetime_utc '2024-11-07 10:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4omg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4OMG # _exptl.entry_id 4OMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OMG _cell.length_a 59.06 _cell.length_b 100.65 _cell.length_c 108.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 42 A THR 42 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc2 A O TRP 83 A TRP 83 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A O GLN 85 A GLN 85 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 D NA NA . A NA 402 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc5 D NA NA . A NA 402 1_555 G O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 D NA NA . A NA 402 1_555 G O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 B O THR 42 B THR 42 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc8 B O TRP 83 B TRP 83 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 B O GLN 85 B GLN 85 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc10 F NA NA . B NA 402 1_555 H O HOH . B HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc11 F NA NA . B NA 402 1_555 H O HOH . B HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 F NA NA . B NA 402 1_555 H O HOH . B HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4OMG _atom_sites.fract_transf_matrix[1][1] 0.016932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CXS A 1 401 1 CXS CXS . D 3 NA A 1 402 1 NA NA . E 2 CXS B 1 401 1 CXS CXS . F 3 NA B 1 402 1 NA NA . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 6 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 9 HOH HOH . G 4 HOH A 5 505 13 HOH HOH . G 4 HOH A 6 506 15 HOH HOH . G 4 HOH A 7 507 17 HOH HOH . G 4 HOH A 8 508 18 HOH HOH . G 4 HOH A 9 509 19 HOH HOH . G 4 HOH A 10 510 20 HOH HOH . G 4 HOH A 11 511 22 HOH HOH . G 4 HOH A 12 512 24 HOH HOH . G 4 HOH A 13 513 27 HOH HOH . G 4 HOH A 14 514 28 HOH HOH . G 4 HOH A 15 515 30 HOH HOH . G 4 HOH A 16 516 33 HOH HOH . G 4 HOH A 17 517 34 HOH HOH . G 4 HOH A 18 518 35 HOH HOH . G 4 HOH A 19 519 38 HOH HOH . G 4 HOH A 20 520 41 HOH HOH . G 4 HOH A 21 521 42 HOH HOH . G 4 HOH A 22 522 45 HOH HOH . G 4 HOH A 23 523 46 HOH HOH . G 4 HOH A 24 524 47 HOH HOH . G 4 HOH A 25 525 48 HOH HOH . G 4 HOH A 26 526 51 HOH HOH . G 4 HOH A 27 527 52 HOH HOH . G 4 HOH A 28 528 54 HOH HOH . G 4 HOH A 29 529 56 HOH HOH . G 4 HOH A 30 530 57 HOH HOH . G 4 HOH A 31 531 60 HOH HOH . G 4 HOH A 32 532 61 HOH HOH . G 4 HOH A 33 533 62 HOH HOH . G 4 HOH A 34 534 63 HOH HOH . G 4 HOH A 35 535 68 HOH HOH . G 4 HOH A 36 536 73 HOH HOH . G 4 HOH A 37 537 74 HOH HOH . G 4 HOH A 38 538 75 HOH HOH . G 4 HOH A 39 539 76 HOH HOH . G 4 HOH A 40 540 77 HOH HOH . G 4 HOH A 41 541 79 HOH HOH . G 4 HOH A 42 542 84 HOH HOH . G 4 HOH A 43 543 86 HOH HOH . G 4 HOH A 44 544 89 HOH HOH . G 4 HOH A 45 545 90 HOH HOH . G 4 HOH A 46 546 91 HOH HOH . G 4 HOH A 47 547 92 HOH HOH . G 4 HOH A 48 548 94 HOH HOH . G 4 HOH A 49 549 95 HOH HOH . G 4 HOH A 50 550 96 HOH HOH . G 4 HOH A 51 551 97 HOH HOH . G 4 HOH A 52 552 99 HOH HOH . G 4 HOH A 53 553 100 HOH HOH . G 4 HOH A 54 554 101 HOH HOH . G 4 HOH A 55 555 102 HOH HOH . G 4 HOH A 56 556 103 HOH HOH . G 4 HOH A 57 557 105 HOH HOH . G 4 HOH A 58 558 106 HOH HOH . G 4 HOH A 59 559 110 HOH HOH . G 4 HOH A 60 560 111 HOH HOH . G 4 HOH A 61 561 112 HOH HOH . G 4 HOH A 62 562 115 HOH HOH . G 4 HOH A 63 563 122 HOH HOH . G 4 HOH A 64 564 125 HOH HOH . G 4 HOH A 65 565 126 HOH HOH . G 4 HOH A 66 566 127 HOH HOH . G 4 HOH A 67 567 129 HOH HOH . G 4 HOH A 68 568 130 HOH HOH . G 4 HOH A 69 569 131 HOH HOH . G 4 HOH A 70 570 139 HOH HOH . G 4 HOH A 71 571 140 HOH HOH . G 4 HOH A 72 572 143 HOH HOH . G 4 HOH A 73 573 144 HOH HOH . G 4 HOH A 74 574 148 HOH HOH . G 4 HOH A 75 575 149 HOH HOH . G 4 HOH A 76 576 153 HOH HOH . G 4 HOH A 77 577 154 HOH HOH . G 4 HOH A 78 578 156 HOH HOH . G 4 HOH A 79 579 157 HOH HOH . G 4 HOH A 80 580 158 HOH HOH . G 4 HOH A 81 581 159 HOH HOH . G 4 HOH A 82 582 161 HOH HOH . G 4 HOH A 83 583 162 HOH HOH . G 4 HOH A 84 584 165 HOH HOH . G 4 HOH A 85 585 167 HOH HOH . G 4 HOH A 86 586 177 HOH HOH . G 4 HOH A 87 587 180 HOH HOH . G 4 HOH A 88 588 181 HOH HOH . G 4 HOH A 89 589 183 HOH HOH . G 4 HOH A 90 590 185 HOH HOH . G 4 HOH A 91 591 188 HOH HOH . G 4 HOH A 92 592 189 HOH HOH . G 4 HOH A 93 593 191 HOH HOH . G 4 HOH A 94 594 193 HOH HOH . G 4 HOH A 95 595 195 HOH HOH . G 4 HOH A 96 596 196 HOH HOH . G 4 HOH A 97 597 197 HOH HOH . G 4 HOH A 98 598 199 HOH HOH . G 4 HOH A 99 599 201 HOH HOH . G 4 HOH A 100 600 203 HOH HOH . G 4 HOH A 101 601 207 HOH HOH . G 4 HOH A 102 602 210 HOH HOH . G 4 HOH A 103 603 214 HOH HOH . G 4 HOH A 104 604 216 HOH HOH . G 4 HOH A 105 605 217 HOH HOH . G 4 HOH A 106 606 219 HOH HOH . G 4 HOH A 107 607 221 HOH HOH . G 4 HOH A 108 608 225 HOH HOH . G 4 HOH A 109 609 227 HOH HOH . G 4 HOH A 110 610 230 HOH HOH . G 4 HOH A 111 611 231 HOH HOH . G 4 HOH A 112 612 234 HOH HOH . G 4 HOH A 113 613 237 HOH HOH . G 4 HOH A 114 614 239 HOH HOH . G 4 HOH A 115 615 240 HOH HOH . G 4 HOH A 116 616 243 HOH HOH . G 4 HOH A 117 617 244 HOH HOH . G 4 HOH A 118 618 247 HOH HOH . G 4 HOH A 119 619 248 HOH HOH . G 4 HOH A 120 620 251 HOH HOH . G 4 HOH A 121 621 253 HOH HOH . G 4 HOH A 122 622 256 HOH HOH . G 4 HOH A 123 623 257 HOH HOH . G 4 HOH A 124 624 259 HOH HOH . G 4 HOH A 125 625 261 HOH HOH . G 4 HOH A 126 626 263 HOH HOH . G 4 HOH A 127 627 268 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . H 4 HOH B 3 503 4 HOH HOH . H 4 HOH B 4 504 5 HOH HOH . H 4 HOH B 5 505 8 HOH HOH . H 4 HOH B 6 506 10 HOH HOH . H 4 HOH B 7 507 11 HOH HOH . H 4 HOH B 8 508 12 HOH HOH . H 4 HOH B 9 509 14 HOH HOH . H 4 HOH B 10 510 16 HOH HOH . H 4 HOH B 11 511 21 HOH HOH . H 4 HOH B 12 512 23 HOH HOH . H 4 HOH B 13 513 25 HOH HOH . H 4 HOH B 14 514 26 HOH HOH . H 4 HOH B 15 515 29 HOH HOH . H 4 HOH B 16 516 31 HOH HOH . H 4 HOH B 17 517 32 HOH HOH . H 4 HOH B 18 518 36 HOH HOH . H 4 HOH B 19 519 37 HOH HOH . H 4 HOH B 20 520 39 HOH HOH . H 4 HOH B 21 521 40 HOH HOH . H 4 HOH B 22 522 43 HOH HOH . H 4 HOH B 23 523 44 HOH HOH . H 4 HOH B 24 524 49 HOH HOH . H 4 HOH B 25 525 50 HOH HOH . H 4 HOH B 26 526 53 HOH HOH . H 4 HOH B 27 527 55 HOH HOH . H 4 HOH B 28 528 58 HOH HOH . H 4 HOH B 29 529 59 HOH HOH . H 4 HOH B 30 530 64 HOH HOH . H 4 HOH B 31 531 65 HOH HOH . H 4 HOH B 32 532 66 HOH HOH . H 4 HOH B 33 533 67 HOH HOH . H 4 HOH B 34 534 69 HOH HOH . H 4 HOH B 35 535 70 HOH HOH . H 4 HOH B 36 536 71 HOH HOH . H 4 HOH B 37 537 72 HOH HOH . H 4 HOH B 38 538 78 HOH HOH . H 4 HOH B 39 539 80 HOH HOH . H 4 HOH B 40 540 81 HOH HOH . H 4 HOH B 41 541 82 HOH HOH . H 4 HOH B 42 542 83 HOH HOH . H 4 HOH B 43 543 85 HOH HOH . H 4 HOH B 44 544 87 HOH HOH . H 4 HOH B 45 545 88 HOH HOH . H 4 HOH B 46 546 93 HOH HOH . H 4 HOH B 47 547 98 HOH HOH . H 4 HOH B 48 548 104 HOH HOH . H 4 HOH B 49 549 107 HOH HOH . H 4 HOH B 50 550 108 HOH HOH . H 4 HOH B 51 551 109 HOH HOH . H 4 HOH B 52 552 113 HOH HOH . H 4 HOH B 53 553 114 HOH HOH . H 4 HOH B 54 554 116 HOH HOH . H 4 HOH B 55 555 117 HOH HOH . H 4 HOH B 56 556 118 HOH HOH . H 4 HOH B 57 557 119 HOH HOH . H 4 HOH B 58 558 120 HOH HOH . H 4 HOH B 59 559 121 HOH HOH . H 4 HOH B 60 560 123 HOH HOH . H 4 HOH B 61 561 124 HOH HOH . H 4 HOH B 62 562 128 HOH HOH . H 4 HOH B 63 563 132 HOH HOH . H 4 HOH B 64 564 133 HOH HOH . H 4 HOH B 65 565 134 HOH HOH . H 4 HOH B 66 566 135 HOH HOH . H 4 HOH B 67 567 136 HOH HOH . H 4 HOH B 68 568 137 HOH HOH . H 4 HOH B 69 569 138 HOH HOH . H 4 HOH B 70 570 141 HOH HOH . H 4 HOH B 71 571 142 HOH HOH . H 4 HOH B 72 572 145 HOH HOH . H 4 HOH B 73 573 146 HOH HOH . H 4 HOH B 74 574 147 HOH HOH . H 4 HOH B 75 575 150 HOH HOH . H 4 HOH B 76 576 151 HOH HOH . H 4 HOH B 77 577 152 HOH HOH . H 4 HOH B 78 578 155 HOH HOH . H 4 HOH B 79 579 160 HOH HOH . H 4 HOH B 80 580 163 HOH HOH . H 4 HOH B 81 581 164 HOH HOH . H 4 HOH B 82 582 166 HOH HOH . H 4 HOH B 83 583 168 HOH HOH . H 4 HOH B 84 584 169 HOH HOH . H 4 HOH B 85 585 170 HOH HOH . H 4 HOH B 86 586 171 HOH HOH . H 4 HOH B 87 587 172 HOH HOH . H 4 HOH B 88 588 173 HOH HOH . H 4 HOH B 89 589 174 HOH HOH . H 4 HOH B 90 590 175 HOH HOH . H 4 HOH B 91 591 176 HOH HOH . H 4 HOH B 92 592 178 HOH HOH . H 4 HOH B 93 593 179 HOH HOH . H 4 HOH B 94 594 182 HOH HOH . H 4 HOH B 95 595 184 HOH HOH . H 4 HOH B 96 596 186 HOH HOH . H 4 HOH B 97 597 187 HOH HOH . H 4 HOH B 98 598 190 HOH HOH . H 4 HOH B 99 599 192 HOH HOH . H 4 HOH B 100 600 194 HOH HOH . H 4 HOH B 101 601 198 HOH HOH . H 4 HOH B 102 602 200 HOH HOH . H 4 HOH B 103 603 202 HOH HOH . H 4 HOH B 104 604 204 HOH HOH . H 4 HOH B 105 605 205 HOH HOH . H 4 HOH B 106 606 206 HOH HOH . H 4 HOH B 107 607 208 HOH HOH . H 4 HOH B 108 608 209 HOH HOH . H 4 HOH B 109 609 211 HOH HOH . H 4 HOH B 110 610 212 HOH HOH . H 4 HOH B 111 611 213 HOH HOH . H 4 HOH B 112 612 215 HOH HOH . H 4 HOH B 113 613 218 HOH HOH . H 4 HOH B 114 614 220 HOH HOH . H 4 HOH B 115 615 222 HOH HOH . H 4 HOH B 116 616 223 HOH HOH . H 4 HOH B 117 617 224 HOH HOH . H 4 HOH B 118 618 226 HOH HOH . H 4 HOH B 119 619 228 HOH HOH . H 4 HOH B 120 620 229 HOH HOH . H 4 HOH B 121 621 232 HOH HOH . H 4 HOH B 122 622 233 HOH HOH . H 4 HOH B 123 623 235 HOH HOH . H 4 HOH B 124 624 236 HOH HOH . H 4 HOH B 125 625 238 HOH HOH . H 4 HOH B 126 626 241 HOH HOH . H 4 HOH B 127 627 242 HOH HOH . H 4 HOH B 128 628 245 HOH HOH . H 4 HOH B 129 629 246 HOH HOH . H 4 HOH B 130 630 249 HOH HOH . H 4 HOH B 131 631 250 HOH HOH . H 4 HOH B 132 632 252 HOH HOH . H 4 HOH B 133 633 254 HOH HOH . H 4 HOH B 134 634 255 HOH HOH . H 4 HOH B 135 635 258 HOH HOH . H 4 HOH B 136 636 260 HOH HOH . H 4 HOH B 137 637 262 HOH HOH . H 4 HOH B 138 638 264 HOH HOH . H 4 HOH B 139 639 265 HOH HOH . H 4 HOH B 140 640 266 HOH HOH . H 4 HOH B 141 641 267 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.653 _atom_site.Cartn_y 16.4 _atom_site.Cartn_z -3.615 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #