data_4OMN # _model_server_result.job_id wpMKcdC6EEY0DZC4v6Zkew _model_server_result.datetime_utc '2024-11-12 19:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4omn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4OMN # _exptl.entry_id 4OMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4OMN _cell.length_a 46.688 _cell.length_b 46.688 _cell.length_c 127.683 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4OMN _atom_sites.fract_transf_matrix[1][1] 0.021419 _atom_sites.fract_transf_matrix[1][2] 0.012366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 201 1 PGE PGE . C 3 PEG A 1 202 2 PEG PEG . D 3 PEG A 1 203 3 PEG PEG . E 4 SO4 A 1 204 1 SO4 SO4 . F 5 GOL A 1 205 1 GOL GOL . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 2 HOH HOH . G 6 HOH A 3 303 3 HOH HOH . G 6 HOH A 4 304 4 HOH HOH . G 6 HOH A 5 305 5 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 7 HOH HOH . G 6 HOH A 8 308 8 HOH HOH . G 6 HOH A 9 309 10 HOH HOH . G 6 HOH A 10 310 11 HOH HOH . G 6 HOH A 11 311 12 HOH HOH . G 6 HOH A 12 312 13 HOH HOH . G 6 HOH A 13 313 14 HOH HOH . G 6 HOH A 14 314 15 HOH HOH . G 6 HOH A 15 315 16 HOH HOH . G 6 HOH A 16 316 17 HOH HOH . G 6 HOH A 17 317 18 HOH HOH . G 6 HOH A 18 318 19 HOH HOH . G 6 HOH A 19 319 20 HOH HOH . G 6 HOH A 20 320 21 HOH HOH . G 6 HOH A 21 321 22 HOH HOH . G 6 HOH A 22 322 23 HOH HOH . G 6 HOH A 23 323 25 HOH HOH . G 6 HOH A 24 324 26 HOH HOH . G 6 HOH A 25 325 28 HOH HOH . G 6 HOH A 26 326 29 HOH HOH . G 6 HOH A 27 327 34 HOH HOH . G 6 HOH A 28 328 36 HOH HOH . G 6 HOH A 29 329 37 HOH HOH . G 6 HOH A 30 330 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 5.996 11.063 12.182 1 46.08 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 5 6.605 12.058 12.975 1 54.8 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 5 6.537 9.694 12.579 1 46.28 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 5 7.876 9.813 13.002 1 61.23 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 5 5.684 9.102 13.695 1 48.18 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 5 6.416 8.103 14.373 1 52.13 ? O3 GOL 205 A 1 HETATM 7 H H11 GOL . . . F 5 4.915 11.088 12.325 1 55.3 ? H11 GOL 205 A 1 HETATM 8 H H12 GOL . . . F 5 6.205 11.251 11.129 1 55.3 ? H12 GOL 205 A 1 HETATM 9 H HO1 GOL . . . F 5 6.306 12.942 12.676 1 65.76 ? HO1 GOL 205 A 1 HETATM 10 H H2 GOL . . . F 5 6.482 9.034 11.713 1 55.53 ? H2 GOL 205 A 1 HETATM 11 H HO2 GOL . . . F 5 7.919 10.391 13.793 1 73.47 ? HO2 GOL 205 A 1 HETATM 12 H H31 GOL . . . F 5 5.397 9.887 14.395 1 57.82 ? H31 GOL 205 A 1 HETATM 13 H H32 GOL . . . F 5 4.775 8.671 13.275 1 57.82 ? H32 GOL 205 A 1 HETATM 14 H HO3 GOL . . . F 5 5.806 7.398 14.674 1 62.56 ? HO3 GOL 205 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #