data_4OMO # _model_server_result.job_id itJF3xWtbcLdri28qtuOuA _model_server_result.datetime_utc '2024-11-05 00:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4omo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4OMO # _exptl.entry_id 4OMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OMO _cell.length_a 43.711 _cell.length_b 45.464 _cell.length_c 57.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 1 A GLY 81 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc2 A N SER 2 A SER 82 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc3 A N HIS 3 A HIS 83 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc4 A ND1 HIS 3 A HIS 83 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc5 B N GLY 1 B GLY 81 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc6 B N SER 2 B SER 82 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc7 B N HIS 3 B HIS 83 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc8 B ND1 HIS 3 B HIS 83 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 4OMO _atom_sites.fract_transf_matrix[1][1] 0.022878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 2 NI NI . D 3 EPE A 1 202 1 EPE EPE . E 2 NI B 1 201 3 NI NI . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 2 HOH HOH . F 4 HOH A 3 303 7 HOH HOH . F 4 HOH A 4 304 8 HOH HOH . F 4 HOH A 5 305 9 HOH HOH . F 4 HOH A 6 306 10 HOH HOH . F 4 HOH A 7 307 13 HOH HOH . F 4 HOH A 8 308 14 HOH HOH . F 4 HOH A 9 309 16 HOH HOH . F 4 HOH A 10 310 17 HOH HOH . F 4 HOH A 11 311 18 HOH HOH . F 4 HOH A 12 312 19 HOH HOH . F 4 HOH A 13 313 20 HOH HOH . F 4 HOH A 14 314 21 HOH HOH . F 4 HOH A 15 315 22 HOH HOH . F 4 HOH A 16 316 25 HOH HOH . F 4 HOH A 17 317 26 HOH HOH . F 4 HOH A 18 318 27 HOH HOH . F 4 HOH A 19 319 29 HOH HOH . F 4 HOH A 20 320 32 HOH HOH . F 4 HOH A 21 321 34 HOH HOH . F 4 HOH A 22 322 35 HOH HOH . F 4 HOH A 23 323 36 HOH HOH . F 4 HOH A 24 324 38 HOH HOH . F 4 HOH A 25 325 39 HOH HOH . F 4 HOH A 26 326 40 HOH HOH . F 4 HOH A 27 327 41 HOH HOH . F 4 HOH A 28 328 42 HOH HOH . F 4 HOH A 29 329 45 HOH HOH . F 4 HOH A 30 330 46 HOH HOH . F 4 HOH A 31 331 48 HOH HOH . F 4 HOH A 32 332 49 HOH HOH . F 4 HOH A 33 333 52 HOH HOH . F 4 HOH A 34 334 53 HOH HOH . F 4 HOH A 35 335 56 HOH HOH . F 4 HOH A 36 336 59 HOH HOH . F 4 HOH A 37 337 61 HOH HOH . F 4 HOH A 38 338 62 HOH HOH . F 4 HOH A 39 339 63 HOH HOH . F 4 HOH A 40 340 65 HOH HOH . F 4 HOH A 41 341 66 HOH HOH . F 4 HOH A 42 342 69 HOH HOH . F 4 HOH A 43 343 70 HOH HOH . F 4 HOH A 44 344 71 HOH HOH . F 4 HOH A 45 345 72 HOH HOH . F 4 HOH A 46 346 73 HOH HOH . F 4 HOH A 47 347 79 HOH HOH . F 4 HOH A 48 348 80 HOH HOH . F 4 HOH A 49 349 83 HOH HOH . F 4 HOH A 50 350 86 HOH HOH . F 4 HOH A 51 351 88 HOH HOH . F 4 HOH A 52 352 89 HOH HOH . F 4 HOH A 53 353 90 HOH HOH . F 4 HOH A 54 354 91 HOH HOH . F 4 HOH A 55 355 92 HOH HOH . F 4 HOH A 56 356 93 HOH HOH . F 4 HOH A 57 357 97 HOH HOH . F 4 HOH A 58 358 101 HOH HOH . F 4 HOH A 59 359 103 HOH HOH . F 4 HOH A 60 360 104 HOH HOH . F 4 HOH A 61 361 105 HOH HOH . F 4 HOH A 62 362 107 HOH HOH . F 4 HOH A 63 363 108 HOH HOH . F 4 HOH A 64 364 110 HOH HOH . F 4 HOH A 65 365 113 HOH HOH . F 4 HOH A 66 366 116 HOH HOH . F 4 HOH A 67 367 119 HOH HOH . F 4 HOH A 68 368 122 HOH HOH . F 4 HOH A 69 369 123 HOH HOH . F 4 HOH A 70 370 127 HOH HOH . F 4 HOH A 71 371 128 HOH HOH . F 4 HOH A 72 372 130 HOH HOH . F 4 HOH A 73 373 133 HOH HOH . F 4 HOH A 74 374 137 HOH HOH . F 4 HOH A 75 375 138 HOH HOH . F 4 HOH A 76 376 139 HOH HOH . F 4 HOH A 77 377 140 HOH HOH . F 4 HOH A 78 378 144 HOH HOH . F 4 HOH A 79 379 145 HOH HOH . F 4 HOH A 80 380 147 HOH HOH . F 4 HOH A 81 381 150 HOH HOH . F 4 HOH A 82 382 151 HOH HOH . G 4 HOH B 1 301 3 HOH HOH . G 4 HOH B 2 302 4 HOH HOH . G 4 HOH B 3 303 5 HOH HOH . G 4 HOH B 4 304 6 HOH HOH . G 4 HOH B 5 305 11 HOH HOH . G 4 HOH B 6 306 12 HOH HOH . G 4 HOH B 7 307 15 HOH HOH . G 4 HOH B 8 308 23 HOH HOH . G 4 HOH B 9 309 24 HOH HOH . G 4 HOH B 10 310 28 HOH HOH . G 4 HOH B 11 311 30 HOH HOH . G 4 HOH B 12 312 31 HOH HOH . G 4 HOH B 13 313 33 HOH HOH . G 4 HOH B 14 314 37 HOH HOH . G 4 HOH B 15 315 43 HOH HOH . G 4 HOH B 16 316 44 HOH HOH . G 4 HOH B 17 317 47 HOH HOH . G 4 HOH B 18 318 50 HOH HOH . G 4 HOH B 19 319 51 HOH HOH . G 4 HOH B 20 320 54 HOH HOH . G 4 HOH B 21 321 55 HOH HOH . G 4 HOH B 22 322 57 HOH HOH . G 4 HOH B 23 323 58 HOH HOH . G 4 HOH B 24 324 60 HOH HOH . G 4 HOH B 25 325 64 HOH HOH . G 4 HOH B 26 326 67 HOH HOH . G 4 HOH B 27 327 68 HOH HOH . G 4 HOH B 28 328 74 HOH HOH . G 4 HOH B 29 329 75 HOH HOH . G 4 HOH B 30 330 76 HOH HOH . G 4 HOH B 31 331 77 HOH HOH . G 4 HOH B 32 332 78 HOH HOH . G 4 HOH B 33 333 81 HOH HOH . G 4 HOH B 34 334 82 HOH HOH . G 4 HOH B 35 335 84 HOH HOH . G 4 HOH B 36 336 85 HOH HOH . G 4 HOH B 37 337 87 HOH HOH . G 4 HOH B 38 338 94 HOH HOH . G 4 HOH B 39 339 95 HOH HOH . G 4 HOH B 40 340 96 HOH HOH . G 4 HOH B 41 341 98 HOH HOH . G 4 HOH B 42 342 99 HOH HOH . G 4 HOH B 43 343 100 HOH HOH . G 4 HOH B 44 344 102 HOH HOH . G 4 HOH B 45 345 106 HOH HOH . G 4 HOH B 46 346 109 HOH HOH . G 4 HOH B 47 347 111 HOH HOH . G 4 HOH B 48 348 112 HOH HOH . G 4 HOH B 49 349 114 HOH HOH . G 4 HOH B 50 350 115 HOH HOH . G 4 HOH B 51 351 117 HOH HOH . G 4 HOH B 52 352 118 HOH HOH . G 4 HOH B 53 353 120 HOH HOH . G 4 HOH B 54 354 121 HOH HOH . G 4 HOH B 55 355 124 HOH HOH . G 4 HOH B 56 356 125 HOH HOH . G 4 HOH B 57 357 126 HOH HOH . G 4 HOH B 58 358 129 HOH HOH . G 4 HOH B 59 359 131 HOH HOH . G 4 HOH B 60 360 132 HOH HOH . G 4 HOH B 61 361 134 HOH HOH . G 4 HOH B 62 362 135 HOH HOH . G 4 HOH B 63 363 136 HOH HOH . G 4 HOH B 64 364 141 HOH HOH . G 4 HOH B 65 365 142 HOH HOH . G 4 HOH B 66 366 143 HOH HOH . G 4 HOH B 67 367 146 HOH HOH . G 4 HOH B 68 368 148 HOH HOH . G 4 HOH B 69 369 149 HOH HOH . G 4 HOH B 70 370 152 HOH HOH . G 4 HOH B 71 371 153 HOH HOH . G 4 HOH B 72 372 154 HOH HOH . G 4 HOH B 73 373 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 3 0.417 0.786 -18.098 0.69 30.52 ? N1 EPE 202 A 1 HETATM 2 C C2 EPE . . . D 3 1.695 0.06 -18.111 0.69 30.49 ? C2 EPE 202 A 1 HETATM 3 C C3 EPE . . . D 3 2.889 0.99 -17.981 0.69 36.76 ? C3 EPE 202 A 1 HETATM 4 N N4 EPE . . . D 3 2.77 2.13 -18.865 0.69 35.95 ? N4 EPE 202 A 1 HETATM 5 C C5 EPE . . . D 3 1.454 2.585 -19.258 0.69 37.88 ? C5 EPE 202 A 1 HETATM 6 C C6 EPE . . . D 3 0.446 2.253 -18.173 0.69 35.62 ? C6 EPE 202 A 1 HETATM 7 C C7 EPE . . . D 3 3.955 2.839 -19.302 0.69 35.02 ? C7 EPE 202 A 1 HETATM 8 C C8 EPE . . . D 3 4.054 4.244 -18.726 0.69 31.17 ? C8 EPE 202 A 1 HETATM 9 O O8 EPE . . . D 3 3.731 4.232 -17.355 0.69 33.16 ? O8 EPE 202 A 1 HETATM 10 C C9 EPE . . . D 3 -0.693 0.15 -17.384 0.69 30.78 ? C9 EPE 202 A 1 HETATM 11 C C10 EPE . . . D 3 -1.895 0.228 -18.302 0.69 26.07 ? C10 EPE 202 A 1 HETATM 12 S S EPE . . . D 3 -3.237 -0.775 -17.663 0.69 16.1 ? S EPE 202 A 1 HETATM 13 O O1S EPE . . . D 3 -2.931 -2.177 -17.921 0.69 19.53 ? O1S EPE 202 A 1 HETATM 14 O O2S EPE . . . D 3 -3.349 -0.596 -16.226 0.69 20.04 ? O2S EPE 202 A 1 HETATM 15 O O3S EPE . . . D 3 -4.465 -0.381 -18.288 0.69 19.29 ? O3S EPE 202 A 1 HETATM 16 H H21 EPE . . . D 3 1.77 -0.48 -19.054 0.69 22.53 ? H21 EPE 202 A 1 HETATM 17 H H22 EPE . . . D 3 1.72 -0.672 -17.312 0.69 33.88 ? H22 EPE 202 A 1 HETATM 18 H H31 EPE . . . D 3 3.792 0.434 -18.225 0.69 43.68 ? H31 EPE 202 A 1 HETATM 19 H H32 EPE . . . D 3 2.977 1.329 -16.949 0.69 38.24 ? H32 EPE 202 A 1 HETATM 20 H H51 EPE . . . D 3 1.158 2.084 -20.18 0.69 42.53 ? H51 EPE 202 A 1 HETATM 21 H H52 EPE . . . D 3 1.464 3.658 -19.441 0.69 38.49 ? H52 EPE 202 A 1 HETATM 22 H H61 EPE . . . D 3 -0.536 2.634 -18.449 0.69 37.64 ? H61 EPE 202 A 1 HETATM 23 H H62 EPE . . . D 3 0.744 2.711 -17.231 0.69 37.16 ? H62 EPE 202 A 1 HETATM 24 H H71 EPE . . . D 3 4.833 2.27 -19.012 0.69 38.44 ? H71 EPE 202 A 1 HETATM 25 H H72 EPE . . . D 3 3.948 2.906 -20.389 0.69 35.3 ? H72 EPE 202 A 1 HETATM 26 H H81 EPE . . . D 3 5.064 4.624 -18.861 0.69 21.13 ? H81 EPE 202 A 1 HETATM 27 H H82 EPE . . . D 3 3.373 4.895 -19.266 0.69 33.88 ? H82 EPE 202 A 1 HETATM 28 H HO8 EPE . . . D 3 3.675 3.306 -17.035 0.69 31.48 ? HO8 EPE 202 A 1 HETATM 29 H H91 EPE . . . D 3 -0.909 0.648 -16.438 0.69 34.12 ? H91 EPE 202 A 1 HETATM 30 H H92 EPE . . . D 3 -0.459 -0.894 -17.184 0.69 35.39 ? H92 EPE 202 A 1 HETATM 31 H H101 EPE . . . D 3 -2.22 1.262 -18.403 0.69 31.48 ? H101 EPE 202 A 1 HETATM 32 H H102 EPE . . . D 3 -1.608 -0.136 -19.287 0.69 33.11 ? H102 EPE 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #