data_4ONJ # _model_server_result.job_id A5OgZD1ns02rXz1nJZ13dg _model_server_result.datetime_utc '2024-10-20 12:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4onj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 4ONJ # _exptl.entry_id 4ONJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ONJ _cell.length_a 153.324 _cell.length_b 153.324 _cell.length_c 148.967 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ONJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 288 n n N HN1 SFG sing 289 n n N HN2 SFG sing 290 n n CA C SFG sing 291 n n CA CB SFG sing 292 n n CA HA SFG sing 293 n n C O SFG doub 294 n n C OXT SFG sing 295 n n OXT HXT SFG sing 296 n n CB CG SFG sing 297 n n CB HB1 SFG sing 298 n n CB HB2 SFG sing 299 n n CG CD SFG sing 300 n n CG HG1 SFG sing 301 n n CG HG2 SFG sing 302 n n CD NE SFG sing 303 n n CD C5' SFG sing 304 n n CD HD SFG sing 305 n n NE HNE1 SFG sing 306 n n NE HNE2 SFG sing 307 n n C5' C4' SFG sing 308 n n C5' "H5'1" SFG sing 309 n n C5' "H5'2" SFG sing 310 n n C4' O4' SFG sing 311 n n C4' C3' SFG sing 312 n n C4' H4' SFG sing 313 n n O4' C1' SFG sing 314 n n C3' O3' SFG sing 315 n n C3' C2' SFG sing 316 n n C3' H3' SFG sing 317 n n O3' HO3' SFG sing 318 n n C2' O2' SFG sing 319 n n C2' C1' SFG sing 320 n n C2' H2' SFG sing 321 n n O2' HO2' SFG sing 322 n n C1' N9 SFG sing 323 n n C1' H1' SFG sing 324 n n N9 C8 SFG sing 325 n y N9 C4 SFG sing 326 n y C8 N7 SFG doub 327 n y C8 H8 SFG sing 328 n n N7 C5 SFG sing 329 n y C5 C6 SFG sing 330 n y C5 C4 SFG doub 331 n y C6 N6 SFG sing 332 n n C6 N1 SFG doub 333 n y N6 HN61 SFG sing 334 n n N6 HN62 SFG sing 335 n n N1 C2 SFG sing 336 n y C2 N3 SFG doub 337 n y C2 H2 SFG sing 338 n n N3 C4 SFG sing 339 n y # _atom_sites.entry_id 4ONJ _atom_sites.fract_transf_matrix[1][1] 0.006522 _atom_sites.fract_transf_matrix[1][2] 0.003766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 700 700 SFG SFG . D 2 SFG B 1 700 700 SFG SFG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . C 2 -74.323 -61.395 -27.286 1 117.55 ? N SFG 700 A 1 HETATM 2 C CA SFG . . . C 2 -74.899 -60.409 -26.393 1 126.25 ? CA SFG 700 A 1 HETATM 3 C C SFG . . . C 2 -76.394 -60.449 -26.502 1 112.32 ? C SFG 700 A 1 HETATM 4 O O SFG . . . C 2 -76.946 -61.544 -26.741 1 101.04 ? O SFG 700 A 1 HETATM 5 O OXT SFG . . . C 2 -77.032 -59.384 -26.35 1 81.69 ? OXT SFG 700 A 1 HETATM 6 C CB SFG . . . C 2 -74.398 -59.022 -26.776 1 153.53 ? CB SFG 700 A 1 HETATM 7 C CG SFG . . . C 2 -72.892 -58.908 -26.568 1 148.15 ? CG SFG 700 A 1 HETATM 8 C CD SFG . . . C 2 -72.419 -57.474 -26.776 1 138.74 ? CD SFG 700 A 1 HETATM 9 N NE SFG . . . C 2 -71.509 -57.425 -27.904 1 147.51 ? NE SFG 700 A 1 HETATM 10 C C5' SFG . . . C 2 -71.7 -56.99 -25.522 1 135.62 ? C5' SFG 700 A 1 HETATM 11 C C4' SFG . . . C 2 -72.238 -57.689 -24.28 1 133.32 ? C4' SFG 700 A 1 HETATM 12 O O4' SFG . . . C 2 -71.151 -58.218 -23.516 1 124.5 ? O4' SFG 700 A 1 HETATM 13 C C3' SFG . . . C 2 -73.005 -56.723 -23.392 1 127.59 ? C3' SFG 700 A 1 HETATM 14 O O3' SFG . . . C 2 -74.357 -57.165 -23.239 1 123.6 ? O3' SFG 700 A 1 HETATM 15 C C2' SFG . . . C 2 -72.302 -56.73 -22.05 1 134.23 ? C2' SFG 700 A 1 HETATM 16 O O2' SFG . . . C 2 -73.199 -57.177 -21.028 1 125.21 ? O2' SFG 700 A 1 HETATM 17 C C1' SFG . . . C 2 -71.139 -57.7 -22.182 1 139.99 ? C1' SFG 700 A 1 HETATM 18 N N9 SFG . . . C 2 -69.861 -56.986 -21.933 1 131.68 ? N9 SFG 700 A 1 HETATM 19 C C8 SFG . . . C 2 -69.371 -55.971 -22.668 1 117.75 ? C8 SFG 700 A 1 HETATM 20 N N7 SFG . . . C 2 -68.181 -55.539 -22.176 1 114.31 ? N7 SFG 700 A 1 HETATM 21 C C5 SFG . . . C 2 -67.894 -56.291 -21.098 1 130.5 ? C5 SFG 700 A 1 HETATM 22 C C6 SFG . . . C 2 -66.791 -56.365 -20.111 1 136.54 ? C6 SFG 700 A 1 HETATM 23 N N6 SFG . . . C 2 -65.73 -55.525 -20.181 1 144.67 ? N6 SFG 700 A 1 HETATM 24 N N1 SFG . . . C 2 -66.879 -57.299 -19.138 1 119.69 ? N1 SFG 700 A 1 HETATM 25 C C2 SFG . . . C 2 -67.928 -58.14 -19.057 1 113.18 ? C2 SFG 700 A 1 HETATM 26 N N3 SFG . . . C 2 -68.962 -58.129 -19.918 1 114.26 ? N3 SFG 700 A 1 HETATM 27 C C4 SFG . . . C 2 -69.004 -57.244 -20.942 1 126.72 ? C4 SFG 700 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #