data_4ONJ # _model_server_result.job_id CC6DI41Rn2gpqNO4WcDlaw _model_server_result.datetime_utc '2024-10-20 12:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4onj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 4ONJ # _exptl.entry_id 4ONJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ONJ _cell.length_a 153.324 _cell.length_b 153.324 _cell.length_c 148.967 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ONJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 288 n n N HN1 SFG sing 289 n n N HN2 SFG sing 290 n n CA C SFG sing 291 n n CA CB SFG sing 292 n n CA HA SFG sing 293 n n C O SFG doub 294 n n C OXT SFG sing 295 n n OXT HXT SFG sing 296 n n CB CG SFG sing 297 n n CB HB1 SFG sing 298 n n CB HB2 SFG sing 299 n n CG CD SFG sing 300 n n CG HG1 SFG sing 301 n n CG HG2 SFG sing 302 n n CD NE SFG sing 303 n n CD C5' SFG sing 304 n n CD HD SFG sing 305 n n NE HNE1 SFG sing 306 n n NE HNE2 SFG sing 307 n n C5' C4' SFG sing 308 n n C5' "H5'1" SFG sing 309 n n C5' "H5'2" SFG sing 310 n n C4' O4' SFG sing 311 n n C4' C3' SFG sing 312 n n C4' H4' SFG sing 313 n n O4' C1' SFG sing 314 n n C3' O3' SFG sing 315 n n C3' C2' SFG sing 316 n n C3' H3' SFG sing 317 n n O3' HO3' SFG sing 318 n n C2' O2' SFG sing 319 n n C2' C1' SFG sing 320 n n C2' H2' SFG sing 321 n n O2' HO2' SFG sing 322 n n C1' N9 SFG sing 323 n n C1' H1' SFG sing 324 n n N9 C8 SFG sing 325 n y N9 C4 SFG sing 326 n y C8 N7 SFG doub 327 n y C8 H8 SFG sing 328 n n N7 C5 SFG sing 329 n y C5 C6 SFG sing 330 n y C5 C4 SFG doub 331 n y C6 N6 SFG sing 332 n n C6 N1 SFG doub 333 n y N6 HN61 SFG sing 334 n n N6 HN62 SFG sing 335 n n N1 C2 SFG sing 336 n y C2 N3 SFG doub 337 n y C2 H2 SFG sing 338 n n N3 C4 SFG sing 339 n y # _atom_sites.entry_id 4ONJ _atom_sites.fract_transf_matrix[1][1] 0.006522 _atom_sites.fract_transf_matrix[1][2] 0.003766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 700 700 SFG SFG . D 2 SFG B 1 700 700 SFG SFG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . D 2 -34.749 -60.321 -25.292 1 104.27 ? N SFG 700 B 1 HETATM 2 C CA SFG . . . D 2 -33.954 -59.438 -26.124 1 110.1 ? CA SFG 700 B 1 HETATM 3 C C SFG . . . D 2 -32.6 -59.253 -25.505 1 95.57 ? C SFG 700 B 1 HETATM 4 O O SFG . . . D 2 -31.926 -58.253 -25.835 1 79.23 ? O SFG 700 B 1 HETATM 5 O OXT SFG . . . D 2 -32.198 -60.104 -24.684 1 82.38 ? OXT SFG 700 B 1 HETATM 6 C CB SFG . . . D 2 -34.649 -58.087 -26.239 1 98.97 ? CB SFG 700 B 1 HETATM 7 C CG SFG . . . D 2 -36.128 -58.259 -26.564 1 98.05 ? CG SFG 700 B 1 HETATM 8 C CD SFG . . . D 2 -36.757 -56.931 -26.968 1 96.62 ? CD SFG 700 B 1 HETATM 9 N NE SFG . . . D 2 -37.581 -56.436 -25.882 1 94.52 ? NE SFG 700 B 1 HETATM 10 C C5' SFG . . . D 2 -37.619 -57.133 -28.208 1 101.92 ? C5' SFG 700 B 1 HETATM 11 C C4' SFG . . . D 2 -36.793 -57.685 -29.363 1 128.12 ? C4' SFG 700 B 1 HETATM 12 O O4' SFG . . . D 2 -37.599 -58.559 -30.159 1 124.54 ? O4' SFG 700 B 1 HETATM 13 C C3' SFG . . . D 2 -36.289 -56.568 -30.263 1 137.3 ? C3' SFG 700 B 1 HETATM 14 O O3' SFG . . . D 2 -34.859 -56.575 -30.298 1 148.82 ? O3' SFG 700 B 1 HETATM 15 C C2' SFG . . . D 2 -36.844 -56.853 -31.645 1 119.53 ? C2' SFG 700 B 1 HETATM 16 O O2' SFG . . . D 2 -35.772 -57.043 -32.573 1 132.22 ? O2' SFG 700 B 1 HETATM 17 C C1' SFG . . . D 2 -37.66 -58.13 -31.522 1 117.7 ? C1' SFG 700 B 1 HETATM 18 N N9 SFG . . . D 2 -39.07 -57.861 -31.9 1 105.97 ? N9 SFG 700 B 1 HETATM 19 C C8 SFG . . . D 2 -39.768 -56.751 -31.597 1 104.15 ? C8 SFG 700 B 1 HETATM 20 N N7 SFG . . . D 2 -41.032 -56.817 -32.089 1 102.85 ? N7 SFG 700 B 1 HETATM 21 C C5 SFG . . . D 2 -41.156 -57.996 -32.726 1 99.95 ? C5 SFG 700 B 1 HETATM 22 C C6 SFG . . . D 2 -42.227 -58.701 -33.47 1 93.74 ? C6 SFG 700 B 1 HETATM 23 N N6 SFG . . . D 2 -43.45 -58.142 -33.634 1 94.46 ? N6 SFG 700 B 1 HETATM 24 N N1 SFG . . . D 2 -41.941 -59.92 -33.978 1 86.16 ? N1 SFG 700 B 1 HETATM 25 C C2 SFG . . . D 2 -40.73 -60.486 -33.822 1 83.51 ? C2 SFG 700 B 1 HETATM 26 N N3 SFG . . . D 2 -39.714 -59.905 -33.16 1 81.59 ? N3 SFG 700 B 1 HETATM 27 C C4 SFG . . . D 2 -39.86 -58.681 -32.599 1 90.7 ? C4 SFG 700 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #