data_4ONV # _model_server_result.job_id C2DQNWVybX6zIDEDkQFdIw _model_server_result.datetime_utc '2024-12-01 05:29:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4onv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4ONV # _exptl.entry_id 4ONV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ONV _cell.length_a 141.17 _cell.length_b 155.41 _cell.length_c 55.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ONV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 Y N N ? 3 EA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 192 A LYS 174 1_555 J C5 KDG . A KDG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? covale ? covale2 B NZ LYS 192 B LYS 174 1_555 S C5 KDG . B KDG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale3 C NZ LYS 192 C LYS 174 1_555 AA C5 KDG . C KDG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? covale ? covale4 D NZ LYS 192 D LYS 174 1_555 JA C5 KDG . D KDG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 4ONV _atom_sites.fract_transf_matrix[1][1] 0.007084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 401 415 EDO EDO . F 3 GOL A 1 402 901 GOL GOL . G 3 GOL A 1 403 907 GOL GOL . H 3 GOL A 1 404 911 GOL GOL . I 3 GOL A 1 405 912 GOL GOL . J 4 KDG A 1 406 1004 KDG KDG . K 2 EDO B 1 401 406 EDO EDO . L 2 EDO B 1 402 412 EDO EDO . M 2 EDO B 1 403 403 EDO EDO . N 2 EDO B 1 404 413 EDO EDO . O 3 GOL B 1 405 905 GOL GOL . P 3 GOL B 1 406 908 GOL GOL . Q 3 GOL B 1 407 909 GOL GOL . R 3 GOL B 1 408 910 GOL GOL . S 4 KDG B 1 409 1002 KDG KDG . T 2 EDO C 1 401 401 EDO EDO . U 2 EDO C 1 402 402 EDO EDO . V 2 EDO C 1 403 404 EDO EDO . W 2 EDO C 1 404 409 EDO EDO . X 2 EDO C 1 405 410 EDO EDO . Y 3 GOL C 1 406 913 GOL GOL . Z 2 EDO C 1 407 407 EDO EDO . AA 4 KDG C 1 408 1003 KDG KDG . BA 2 EDO D 1 401 408 EDO EDO . CA 2 EDO D 1 402 411 EDO EDO . DA 2 EDO D 1 403 414 EDO EDO . EA 3 GOL D 1 404 902 GOL GOL . FA 2 EDO D 1 405 405 EDO EDO . GA 3 GOL D 1 406 903 GOL GOL . HA 3 GOL D 1 407 904 GOL GOL . IA 3 GOL D 1 408 906 GOL GOL . JA 4 KDG D 1 409 1001 KDG KDG . KA 5 HOH A 1 501 605 HOH HOH . KA 5 HOH A 2 502 610 HOH HOH . KA 5 HOH A 3 503 624 HOH HOH . KA 5 HOH A 4 504 629 HOH HOH . KA 5 HOH A 5 505 631 HOH HOH . KA 5 HOH A 6 506 632 HOH HOH . KA 5 HOH A 7 507 637 HOH HOH . KA 5 HOH A 8 508 642 HOH HOH . KA 5 HOH A 9 509 655 HOH HOH . KA 5 HOH A 10 510 656 HOH HOH . KA 5 HOH A 11 511 679 HOH HOH . KA 5 HOH A 12 512 681 HOH HOH . KA 5 HOH A 13 513 684 HOH HOH . KA 5 HOH A 14 514 694 HOH HOH . KA 5 HOH A 15 515 699 HOH HOH . KA 5 HOH A 16 516 700 HOH HOH . KA 5 HOH A 17 517 706 HOH HOH . KA 5 HOH A 18 518 707 HOH HOH . KA 5 HOH A 19 519 710 HOH HOH . KA 5 HOH A 20 520 727 HOH HOH . KA 5 HOH A 21 521 749 HOH HOH . KA 5 HOH A 22 522 750 HOH HOH . KA 5 HOH A 23 523 752 HOH HOH . KA 5 HOH A 24 524 753 HOH HOH . KA 5 HOH A 25 525 755 HOH HOH . KA 5 HOH A 26 526 764 HOH HOH . KA 5 HOH A 27 527 770 HOH HOH . KA 5 HOH A 28 528 772 HOH HOH . KA 5 HOH A 29 529 774 HOH HOH . KA 5 HOH A 30 530 791 HOH HOH . KA 5 HOH A 31 531 794 HOH HOH . KA 5 HOH A 32 532 804 HOH HOH . KA 5 HOH A 33 533 1507 HOH HOH . KA 5 HOH A 34 534 1513 HOH HOH . KA 5 HOH A 35 535 1517 HOH HOH . KA 5 HOH A 36 536 1519 HOH HOH . KA 5 HOH A 37 537 1532 HOH HOH . KA 5 HOH A 38 538 1533 HOH HOH . KA 5 HOH A 39 539 1536 HOH HOH . KA 5 HOH A 40 540 1537 HOH HOH . KA 5 HOH A 41 541 1538 HOH HOH . KA 5 HOH A 42 542 1539 HOH HOH . KA 5 HOH A 43 543 1542 HOH HOH . KA 5 HOH A 44 544 1543 HOH HOH . KA 5 HOH A 45 545 1549 HOH HOH . KA 5 HOH A 46 546 1554 HOH HOH . KA 5 HOH A 47 547 1557 HOH HOH . KA 5 HOH A 48 548 1558 HOH HOH . LA 5 HOH B 1 601 601 HOH HOH . LA 5 HOH B 2 602 602 HOH HOH . LA 5 HOH B 3 603 606 HOH HOH . LA 5 HOH B 4 604 609 HOH HOH . LA 5 HOH B 5 605 614 HOH HOH . LA 5 HOH B 6 606 616 HOH HOH . LA 5 HOH B 7 607 617 HOH HOH . LA 5 HOH B 8 608 618 HOH HOH . LA 5 HOH B 9 609 620 HOH HOH . LA 5 HOH B 10 610 630 HOH HOH . LA 5 HOH B 11 611 638 HOH HOH . LA 5 HOH B 12 612 653 HOH HOH . LA 5 HOH B 13 613 654 HOH HOH . LA 5 HOH B 14 614 658 HOH HOH . LA 5 HOH B 15 615 666 HOH HOH . LA 5 HOH B 16 616 667 HOH HOH . LA 5 HOH B 17 617 669 HOH HOH . LA 5 HOH B 18 618 677 HOH HOH . LA 5 HOH B 19 619 692 HOH HOH . LA 5 HOH B 20 620 693 HOH HOH . LA 5 HOH B 21 621 711 HOH HOH . LA 5 HOH B 22 622 714 HOH HOH . LA 5 HOH B 23 623 726 HOH HOH . LA 5 HOH B 24 624 730 HOH HOH . LA 5 HOH B 25 625 739 HOH HOH . LA 5 HOH B 26 626 746 HOH HOH . LA 5 HOH B 27 627 756 HOH HOH . LA 5 HOH B 28 628 757 HOH HOH . LA 5 HOH B 29 629 758 HOH HOH . LA 5 HOH B 30 630 760 HOH HOH . LA 5 HOH B 31 631 761 HOH HOH . LA 5 HOH B 32 632 762 HOH HOH . LA 5 HOH B 33 633 767 HOH HOH . LA 5 HOH B 34 634 773 HOH HOH . LA 5 HOH B 35 635 779 HOH HOH . LA 5 HOH B 36 636 781 HOH HOH . LA 5 HOH B 37 637 785 HOH HOH . LA 5 HOH B 38 638 786 HOH HOH . LA 5 HOH B 39 639 788 HOH HOH . LA 5 HOH B 40 640 793 HOH HOH . LA 5 HOH B 41 641 801 HOH HOH . LA 5 HOH B 42 642 802 HOH HOH . LA 5 HOH B 43 643 1504 HOH HOH . LA 5 HOH B 44 644 1509 HOH HOH . LA 5 HOH B 45 645 1512 HOH HOH . LA 5 HOH B 46 646 1518 HOH HOH . LA 5 HOH B 47 647 1521 HOH HOH . LA 5 HOH B 48 648 1522 HOH HOH . LA 5 HOH B 49 649 1526 HOH HOH . LA 5 HOH B 50 650 1531 HOH HOH . LA 5 HOH B 51 651 1534 HOH HOH . LA 5 HOH B 52 652 1541 HOH HOH . LA 5 HOH B 53 653 1544 HOH HOH . LA 5 HOH B 54 654 1546 HOH HOH . LA 5 HOH B 55 655 1547 HOH HOH . LA 5 HOH B 56 656 1548 HOH HOH . LA 5 HOH B 57 657 1551 HOH HOH . LA 5 HOH B 58 658 1555 HOH HOH . LA 5 HOH B 59 659 1559 HOH HOH . MA 5 HOH C 1 501 604 HOH HOH . MA 5 HOH C 2 502 607 HOH HOH . MA 5 HOH C 3 503 608 HOH HOH . MA 5 HOH C 4 504 615 HOH HOH . MA 5 HOH C 5 505 622 HOH HOH . MA 5 HOH C 6 506 623 HOH HOH . MA 5 HOH C 7 507 626 HOH HOH . MA 5 HOH C 8 508 628 HOH HOH . MA 5 HOH C 9 509 633 HOH HOH . MA 5 HOH C 10 510 647 HOH HOH . MA 5 HOH C 11 511 648 HOH HOH . MA 5 HOH C 12 512 665 HOH HOH . MA 5 HOH C 13 513 668 HOH HOH . MA 5 HOH C 14 514 670 HOH HOH . MA 5 HOH C 15 515 685 HOH HOH . MA 5 HOH C 16 516 686 HOH HOH . MA 5 HOH C 17 517 691 HOH HOH . MA 5 HOH C 18 518 696 HOH HOH . MA 5 HOH C 19 519 717 HOH HOH . MA 5 HOH C 20 520 720 HOH HOH . MA 5 HOH C 21 521 747 HOH HOH . MA 5 HOH C 22 522 748 HOH HOH . MA 5 HOH C 23 523 751 HOH HOH . MA 5 HOH C 24 524 754 HOH HOH . MA 5 HOH C 25 525 759 HOH HOH . MA 5 HOH C 26 526 766 HOH HOH . MA 5 HOH C 27 527 768 HOH HOH . MA 5 HOH C 28 528 769 HOH HOH . MA 5 HOH C 29 529 780 HOH HOH . MA 5 HOH C 30 530 787 HOH HOH . MA 5 HOH C 31 531 796 HOH HOH . MA 5 HOH C 32 532 800 HOH HOH . MA 5 HOH C 33 533 803 HOH HOH . MA 5 HOH C 34 534 1506 HOH HOH . MA 5 HOH C 35 535 1511 HOH HOH . MA 5 HOH C 36 536 1520 HOH HOH . MA 5 HOH C 37 537 1523 HOH HOH . MA 5 HOH C 38 538 1527 HOH HOH . MA 5 HOH C 39 539 1535 HOH HOH . MA 5 HOH C 40 540 1553 HOH HOH . MA 5 HOH C 41 541 1556 HOH HOH . NA 5 HOH D 1 501 613 HOH HOH . NA 5 HOH D 2 502 625 HOH HOH . NA 5 HOH D 3 503 636 HOH HOH . NA 5 HOH D 4 504 639 HOH HOH . NA 5 HOH D 5 505 641 HOH HOH . NA 5 HOH D 6 506 643 HOH HOH . NA 5 HOH D 7 507 645 HOH HOH . NA 5 HOH D 8 508 649 HOH HOH . NA 5 HOH D 9 509 651 HOH HOH . NA 5 HOH D 10 510 652 HOH HOH . NA 5 HOH D 11 511 659 HOH HOH . NA 5 HOH D 12 512 662 HOH HOH . NA 5 HOH D 13 513 675 HOH HOH . NA 5 HOH D 14 514 682 HOH HOH . NA 5 HOH D 15 515 709 HOH HOH . NA 5 HOH D 16 516 715 HOH HOH . NA 5 HOH D 17 517 716 HOH HOH . NA 5 HOH D 18 518 719 HOH HOH . NA 5 HOH D 19 519 729 HOH HOH . NA 5 HOH D 20 520 731 HOH HOH . NA 5 HOH D 21 521 733 HOH HOH . NA 5 HOH D 22 522 738 HOH HOH . NA 5 HOH D 23 523 744 HOH HOH . NA 5 HOH D 24 524 745 HOH HOH . NA 5 HOH D 25 525 763 HOH HOH . NA 5 HOH D 26 526 765 HOH HOH . NA 5 HOH D 27 527 771 HOH HOH . NA 5 HOH D 28 528 775 HOH HOH . NA 5 HOH D 29 529 776 HOH HOH . NA 5 HOH D 30 530 777 HOH HOH . NA 5 HOH D 31 531 778 HOH HOH . NA 5 HOH D 32 532 783 HOH HOH . NA 5 HOH D 33 533 784 HOH HOH . NA 5 HOH D 34 534 789 HOH HOH . NA 5 HOH D 35 535 790 HOH HOH . NA 5 HOH D 36 536 795 HOH HOH . NA 5 HOH D 37 537 1501 HOH HOH . NA 5 HOH D 38 538 1502 HOH HOH . NA 5 HOH D 39 539 1503 HOH HOH . NA 5 HOH D 40 540 1505 HOH HOH . NA 5 HOH D 41 541 1508 HOH HOH . NA 5 HOH D 42 542 1510 HOH HOH . NA 5 HOH D 43 543 1514 HOH HOH . NA 5 HOH D 44 544 1516 HOH HOH . NA 5 HOH D 45 545 1524 HOH HOH . NA 5 HOH D 46 546 1525 HOH HOH . NA 5 HOH D 47 547 1528 HOH HOH . NA 5 HOH D 48 548 1529 HOH HOH . NA 5 HOH D 49 549 1530 HOH HOH . NA 5 HOH D 50 550 1545 HOH HOH . NA 5 HOH D 51 551 1550 HOH HOH . NA 5 HOH D 52 552 1552 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 142.846 56.664 -12.814 1 40.25 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . F 3 141.754 56.445 -13.738 1 38.43 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . F 3 143.999 57.415 -13.508 1 40.78 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . F 3 144.575 58.419 -12.636 1 37.67 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . F 3 145.11 56.466 -13.964 1 39.2 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . F 3 145.471 56.584 -15.346 1 39.12 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 456 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #