data_4OO1
#
_model_server_result.job_id            LK6Rdj_5ncWvcj0vqJJNQg 
_model_server_result.datetime_utc      '2025-07-02 07:13:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4oo1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":302}' 
#
_entry.id    4OO1 
#
_exptl.entry_id    4OO1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4OO1 
_cell.length_a            193.292 
_cell.length_b            200.083 
_cell.length_c            97.405 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4OO1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      13 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E OD1 ASP 85 E ASP 81 1_555 L MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 E O GLN 89 E GLN 85 1_555 L MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc3 J OD1 ASN 113 J ASN 238 1_555 P MG MG . S MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc4 K O3' A 5 S A 23 1_555 P MG MG . S MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc5 K OP1 A 6 S A 24 1_555 P MG MG . S MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 299 n n 
C1 H11 MPD sing 300 n n 
C1 H12 MPD sing 301 n n 
C1 H13 MPD sing 302 n n 
C2 O2 MPD sing 303 n n 
C2 CM MPD sing 304 n n 
C2 C3 MPD sing 305 n n 
O2 HO2 MPD sing 306 n n 
CM HM1 MPD sing 307 n n 
CM HM2 MPD sing 308 n n 
CM HM3 MPD sing 309 n n 
C3 C4 MPD sing 310 n n 
C3 H31 MPD sing 311 n n 
C3 H32 MPD sing 312 n n 
C4 O4 MPD sing 313 n n 
C4 C5 MPD sing 314 n n 
C4 H4 MPD sing 315 n n 
O4 HO4 MPD sing 316 n n 
C5 H51 MPD sing 317 n n 
C5 H52 MPD sing 318 n n 
C5 H53 MPD sing 319 n n 
#
_atom_sites.entry_id                     4OO1 
_atom_sites.fract_transf_matrix[1][1]    0.005174 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 12 MG E 1 301 2 MG MG . 
M 13 MPD E 1 302 207 MPD MPD . 
N 14 MES G 1 301 302 MES MES . 
O 15 PO4 I 1 301 2 PO4 PO4 . 
P 12 MG S 1 101 1 MG MG . 
Q 15 PO4 S 1 102 1 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . M 13 203.875 18.994 318.691 1 90.16 ? C1 MPD 302 E 1 
HETATM 2 C C2 MPD . . . M 13 203.313 18.674 320.07 1 115.97 ? C2 MPD 302 E 1 
HETATM 3 O O2 MPD . . . M 13 201.867 18.813 320.007 1 113.72 ? O2 MPD 302 E 1 
HETATM 4 C CM MPD . . . M 13 203.616 17.227 320.433 1 109.26 ? CM MPD 302 E 1 
HETATM 5 C C3 MPD . . . M 13 203.852 19.629 321.13 1 112.04 ? C3 MPD 302 E 1 
HETATM 6 C C4 MPD . . . M 13 203.217 21.01 320.98 1 91.34 ? C4 MPD 302 E 1 
HETATM 7 O O4 MPD . . . M 13 201.983 21.019 321.667 1 95.68 ? O4 MPD 302 E 1 
HETATM 8 C C5 MPD . . . M 13 204.153 22.102 321.498 1 78.6 ? C5 MPD 302 E 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#