data_4OOL # _model_server_result.job_id -cJazrctRbdbjnbyoHyEGg _model_server_result.datetime_utc '2024-11-30 05:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ool # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4OOL # _exptl.entry_id 4OOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-2-({[(2S)-2-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(1,5-dihydroxy-4-oxo-1,4-dihydropyridin-2-yl)methoxy]imino}acetyl]amino}-3-oxopropyl]oxy}imino)pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OOL _cell.length_a 68.28 _cell.length_b 83.54 _cell.length_c 89.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 253 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C23 _struct_conn.ptnr2_label_comp_id 2U2 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 2U2 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.444 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H20 N6 O11 S' _chem_comp.formula_weight 540.461 _chem_comp.id 2U2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-2-({[(2S)-2-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(1,5-dihydroxy-4-oxo-1,4-dihydropyridin-2-yl)methoxy]imino}acetyl]amino}-3-oxopropyl]oxy}imino)pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C5 2U2 sing 1 n n C5 N1 2U2 doub 2 n y C5 S4 2U2 sing 3 n y N1 C2 2U2 sing 4 n y S4 C3 2U2 sing 5 n y C2 C6 2U2 sing 6 n n C2 C3 2U2 doub 7 n y N7 O8 2U2 sing 8 n n N7 C6 2U2 doub 9 z n O8 C10 2U2 sing 10 n n C6 C20 2U2 sing 11 n n O36 C34 2U2 doub 12 n n C10 C11 2U2 sing 13 n n C12 C11 2U2 doub 14 n n C12 C13 2U2 sing 15 n n O27 C23 2U2 doub 16 n n O17 C13 2U2 doub 17 n n C11 N16 2U2 sing 18 n n N21 C20 2U2 sing 19 n n N21 C22 2U2 sing 20 n n C34 C29 2U2 sing 21 n n C34 O35 2U2 sing 22 n n C20 O28 2U2 doub 23 n n C13 C14 2U2 sing 24 n n C30 C29 2U2 sing 25 n n C30 C31 2U2 sing 26 n n C29 N24 2U2 doub 27 e n N24 O25 2U2 sing 28 n n C23 C22 2U2 sing 29 n n C31 C32 2U2 sing 30 n n O25 C26 2U2 sing 31 n n C22 C26 2U2 sing 32 n n N16 O18 2U2 sing 33 n n N16 C15 2U2 sing 34 n n C14 C15 2U2 doub 35 n n C14 O19 2U2 sing 36 n n C32 O33 2U2 doub 37 n n C32 O37 2U2 sing 38 n n C3 H1 2U2 sing 39 n n C12 H2 2U2 sing 40 n n C15 H3 2U2 sing 41 n n C23 H4 2U2 sing 42 n n C10 H5 2U2 sing 43 n n C10 H6 2U2 sing 44 n n C30 H7 2U2 sing 45 n n C30 H8 2U2 sing 46 n n C31 H9 2U2 sing 47 n n C31 H10 2U2 sing 48 n n C26 H11 2U2 sing 49 n n C26 H12 2U2 sing 50 n n C22 H13 2U2 sing 51 n n N9 H14 2U2 sing 52 n n N9 H15 2U2 sing 53 n n N21 H16 2U2 sing 54 n n O35 H17 2U2 sing 55 n n O37 H18 2U2 sing 56 n n O19 H19 2U2 sing 57 n n O18 H20 2U2 sing 58 n n # _atom_sites.entry_id 4OOL _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2U2 A 1 601 999 2U2 PFE . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 1 HOH HOH . C 3 HOH A 5 705 3 HOH HOH . C 3 HOH A 6 706 5 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 20 HOH HOH . C 3 HOH A 20 720 21 HOH HOH . C 3 HOH A 21 721 22 HOH HOH . C 3 HOH A 22 722 24 HOH HOH . C 3 HOH A 23 723 26 HOH HOH . C 3 HOH A 24 724 28 HOH HOH . C 3 HOH A 25 725 29 HOH HOH . C 3 HOH A 26 726 30 HOH HOH . C 3 HOH A 27 727 31 HOH HOH . C 3 HOH A 28 728 32 HOH HOH . C 3 HOH A 29 729 33 HOH HOH . C 3 HOH A 30 730 34 HOH HOH . C 3 HOH A 31 731 35 HOH HOH . C 3 HOH A 32 732 36 HOH HOH . C 3 HOH A 33 733 37 HOH HOH . C 3 HOH A 34 734 38 HOH HOH . C 3 HOH A 35 735 39 HOH HOH . C 3 HOH A 36 736 40 HOH HOH . C 3 HOH A 37 737 41 HOH HOH . C 3 HOH A 38 738 42 HOH HOH . C 3 HOH A 39 739 44 HOH HOH . C 3 HOH A 40 740 45 HOH HOH . C 3 HOH A 41 741 47 HOH HOH . C 3 HOH A 42 742 48 HOH HOH . C 3 HOH A 43 743 50 HOH HOH . C 3 HOH A 44 744 52 HOH HOH . C 3 HOH A 45 745 53 HOH HOH . C 3 HOH A 46 746 55 HOH HOH . C 3 HOH A 47 747 56 HOH HOH . C 3 HOH A 48 748 57 HOH HOH . C 3 HOH A 49 749 58 HOH HOH . C 3 HOH A 50 750 59 HOH HOH . C 3 HOH A 51 751 62 HOH HOH . C 3 HOH A 52 752 63 HOH HOH . C 3 HOH A 53 753 65 HOH HOH . C 3 HOH A 54 754 66 HOH HOH . C 3 HOH A 55 755 67 HOH HOH . C 3 HOH A 56 756 70 HOH HOH . C 3 HOH A 57 757 71 HOH HOH . C 3 HOH A 58 758 72 HOH HOH . C 3 HOH A 59 759 73 HOH HOH . C 3 HOH A 60 760 74 HOH HOH . C 3 HOH A 61 761 75 HOH HOH . C 3 HOH A 62 762 76 HOH HOH . C 3 HOH A 63 763 77 HOH HOH . C 3 HOH A 64 764 78 HOH HOH . C 3 HOH A 65 765 79 HOH HOH . C 3 HOH A 66 766 83 HOH HOH . C 3 HOH A 67 767 84 HOH HOH . C 3 HOH A 68 768 85 HOH HOH . C 3 HOH A 69 769 86 HOH HOH . C 3 HOH A 70 770 87 HOH HOH . C 3 HOH A 71 771 88 HOH HOH . C 3 HOH A 72 772 89 HOH HOH . C 3 HOH A 73 773 90 HOH HOH . C 3 HOH A 74 774 91 HOH HOH . C 3 HOH A 75 775 92 HOH HOH . C 3 HOH A 76 776 93 HOH HOH . C 3 HOH A 77 777 94 HOH HOH . C 3 HOH A 78 778 98 HOH HOH . C 3 HOH A 79 779 99 HOH HOH . C 3 HOH A 80 780 100 HOH HOH . C 3 HOH A 81 781 101 HOH HOH . C 3 HOH A 82 782 102 HOH HOH . C 3 HOH A 83 783 103 HOH HOH . C 3 HOH A 84 784 104 HOH HOH . C 3 HOH A 85 785 107 HOH HOH . C 3 HOH A 86 786 108 HOH HOH . C 3 HOH A 87 787 109 HOH HOH . C 3 HOH A 88 788 110 HOH HOH . C 3 HOH A 89 789 111 HOH HOH . C 3 HOH A 90 790 113 HOH HOH . C 3 HOH A 91 791 115 HOH HOH . C 3 HOH A 92 792 116 HOH HOH . C 3 HOH A 93 793 117 HOH HOH . C 3 HOH A 94 794 118 HOH HOH . C 3 HOH A 95 795 121 HOH HOH . C 3 HOH A 96 796 125 HOH HOH . C 3 HOH A 97 797 127 HOH HOH . C 3 HOH A 98 798 131 HOH HOH . C 3 HOH A 99 799 132 HOH HOH . C 3 HOH A 100 800 133 HOH HOH . C 3 HOH A 101 801 134 HOH HOH . C 3 HOH A 102 802 135 HOH HOH . C 3 HOH A 103 803 137 HOH HOH . C 3 HOH A 104 804 138 HOH HOH . C 3 HOH A 105 805 139 HOH HOH . C 3 HOH A 106 806 140 HOH HOH . C 3 HOH A 107 807 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 2U2 . . . B 2 24.35 4.214 15.41 1 81.38 ? C3 2U2 601 A 1 HETATM 2 C C2 2U2 . . . B 2 24.896 3.182 14.726 1 83.08 ? C2 2U2 601 A 1 HETATM 3 C C5 2U2 . . . B 2 23.512 3.871 13.094 1 79.74 ? C5 2U2 601 A 1 HETATM 4 C C12 2U2 . . . B 2 23.594 -0.279 15.997 1 118.56 ? C12 2U2 601 A 1 HETATM 5 C C15 2U2 . . . B 2 23.609 -1.088 18.631 1 120.35 ? C15 2U2 601 A 1 HETATM 6 C C14 2U2 . . . B 2 22.51 -0.409 18.193 1 119.56 ? C14 2U2 601 A 1 HETATM 7 C C11 2U2 . . . B 2 24.692 -0.939 16.497 1 117.55 ? C11 2U2 601 A 1 HETATM 8 C C13 2U2 . . . B 2 22.469 0.009 16.824 1 118.67 ? C13 2U2 601 A 1 HETATM 9 C C23 2U2 . . . B 2 28.748 5.457 17.435 1 64.43 ? C23 2U2 601 A 1 HETATM 10 C C6 2U2 . . . B 2 25.832 2.222 15.377 1 86.87 ? C6 2U2 601 A 1 HETATM 11 C C29 2U2 . . . B 2 32.336 3.567 16.958 1 88.33 ? C29 2U2 601 A 1 HETATM 12 C C20 2U2 . . . B 2 26.489 2.601 16.662 1 82.03 ? C20 2U2 601 A 1 HETATM 13 C C34 2U2 . . . B 2 33.154 4.739 16.639 1 88.73 ? C34 2U2 601 A 1 HETATM 14 C C32 2U2 . . . B 2 34.108 1.498 18.977 1 104.39 ? C32 2U2 601 A 1 HETATM 15 C C10 2U2 . . . B 2 25.907 -1.19 15.596 1 111.08 ? C10 2U2 601 A 1 HETATM 16 C C30 2U2 . . . B 2 32.9 2.163 16.867 1 94.95 ? C30 2U2 601 A 1 HETATM 17 C C31 2U2 . . . B 2 34.255 2.065 17.585 1 100.54 ? C31 2U2 601 A 1 HETATM 18 C C26 2U2 . . . B 2 29.128 3.203 18.531 1 74.02 ? C26 2U2 601 A 1 HETATM 19 C C22 2U2 . . . B 2 28.147 4.116 17.789 1 73.4 ? C22 2U2 601 A 1 HETATM 20 N N1 2U2 . . . B 2 24.381 2.999 13.505 1 80.7 ? N1 2U2 601 A 1 HETATM 21 N N7 2U2 . . . B 2 25.991 1.053 14.815 1 94.9 ? N7 2U2 601 A 1 HETATM 22 N N24 2U2 . . . B 2 31.125 3.817 17.322 1 81.74 ? N24 2U2 601 A 1 HETATM 23 N N16 2U2 . . . B 2 24.666 -1.383 17.802 1 120.44 ? N16 2U2 601 A 1 HETATM 24 N N9 2U2 . . . B 2 22.896 3.887 11.855 1 79.64 ? N9 2U2 601 A 1 HETATM 25 N N21 2U2 . . . B 2 27.453 3.548 16.618 1 77.68 ? N21 2U2 601 A 1 HETATM 26 O O36 2U2 . . . B 2 33.755 4.806 15.572 1 89.2 ? O36 2U2 601 A 1 HETATM 27 O O33 2U2 . . . B 2 34.464 0.352 19.214 1 104.67 ? O33 2U2 601 A 1 HETATM 28 O O17 2U2 . . . B 2 21.511 0.62 16.363 1 117.92 ? O17 2U2 601 A 1 HETATM 29 O O27 2U2 . . . B 2 28.84 5.801 16.281 1 54.73 ? O27 2U2 601 A 1 HETATM 30 O O28 2U2 . . . B 2 26.145 2.085 17.712 1 81.37 ? O28 2U2 601 A 1 HETATM 31 O O35 2U2 . . . B 2 33.203 5.643 17.458 1 88.01 ? O35 2U2 601 A 1 HETATM 32 O O37 2U2 . . . B 2 33.631 2.186 19.869 1 106.38 ? O37 2U2 601 A 1 HETATM 33 O O19 2U2 . . . B 2 21.484 -0.153 19.061 1 119.08 ? O19 2U2 601 A 1 HETATM 34 O O18 2U2 . . . B 2 25.721 -2.186 18.328 1 120.89 ? O18 2U2 601 A 1 HETATM 35 O O8 2U2 . . . B 2 26.731 -0.017 15.372 1 103.33 ? O8 2U2 601 A 1 HETATM 36 O O25 2U2 . . . B 2 30.181 2.818 17.654 1 78.63 ? O25 2U2 601 A 1 HETATM 37 S S4 2U2 . . . B 2 23.203 5.04 14.366 1 79.11 ? S4 2U2 601 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #