data_4OON # _model_server_result.job_id thaarO0L7dHr2tL1K5QjJA _model_server_result.datetime_utc '2024-11-30 06:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4oon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4OON # _exptl.entry_id 4OON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 664.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OON _cell.length_a 113.77 _cell.length_b 113.77 _cell.length_c 123.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OON _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 434 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 461 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C25 _struct_conn.ptnr2_label_comp_id 2U4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 2U4 _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.363 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H24 N6 O14 S' _chem_comp.formula_weight 664.555 _chem_comp.id 2U4 _chem_comp.mon_nstd_flag . _chem_comp.name '(4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O45 C44 2U4 sing 1 n n C44 C41 2U4 doub 2 n y C44 C43 2U4 sing 3 n y C41 C40 2U4 sing 4 n y O37 C35 2U4 doub 5 n n O46 C43 2U4 sing 6 n n C43 C42 2U4 doub 7 n y C40 C35 2U4 sing 8 n n C40 C39 2U4 doub 9 n y C35 N34 2U4 sing 10 n n O5 C4 2U4 doub 11 n n C42 C39 2U4 sing 12 n y C39 C36 2U4 sing 13 n n N34 C36 2U4 sing 14 n n N34 C3 2U4 sing 15 n n C4 C3 2U4 sing 16 n n C4 O33 2U4 sing 17 n n C36 O38 2U4 doub 18 n n C3 C2 2U4 sing 19 n n O32 C30 2U4 doub 20 n n O31 C30 2U4 sing 21 n n C30 C1 2U4 sing 22 n n C2 C1 2U4 sing 23 n n C1 N26 2U4 doub 24 e n N26 O27 2U4 sing 25 n n O27 C28 2U4 sing 26 n n C28 C24 2U4 sing 27 n n C25 C24 2U4 sing 28 n n C25 O29 2U4 doub 29 n n C24 N23 2U4 sing 30 n n C18 C16 2U4 sing 31 n n N23 C13 2U4 sing 32 n n C19 C16 2U4 sing 33 n n C16 O15 2U4 sing 34 n n C16 C17 2U4 sing 35 n n O15 N14 2U4 sing 36 n n C13 O22 2U4 doub 37 n n C13 C12 2U4 sing 38 n n C17 O21 2U4 doub 39 n n C17 O20 2U4 sing 40 n n N14 C12 2U4 doub 41 z n C12 C8 2U4 sing 42 n n C8 C7 2U4 doub 43 n y C8 N9 2U4 sing 44 n y C7 S6 2U4 sing 45 n y N9 C10 2U4 doub 46 n y S6 C10 2U4 sing 47 n y C10 N11 2U4 sing 48 n n C41 H1 2U4 sing 49 n n C42 H2 2U4 sing 50 n n C7 H3 2U4 sing 51 n n C25 H4 2U4 sing 52 n n C18 H5 2U4 sing 53 n n C18 H6 2U4 sing 54 n n C18 H7 2U4 sing 55 n n C19 H8 2U4 sing 56 n n C19 H9 2U4 sing 57 n n C19 H10 2U4 sing 58 n n C2 H11 2U4 sing 59 n n C2 H12 2U4 sing 60 n n C28 H13 2U4 sing 61 n n C28 H14 2U4 sing 62 n n C24 H15 2U4 sing 63 n n C3 H16 2U4 sing 64 n n N11 H17 2U4 sing 65 n n N11 H18 2U4 sing 66 n n N23 H19 2U4 sing 67 n n O31 H20 2U4 sing 68 n n O33 H21 2U4 sing 69 n n O20 H22 2U4 sing 70 n n O45 H23 2U4 sing 71 n n O46 H24 2U4 sing 72 n n # _atom_sites.entry_id 4OON _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2U4 A 1 901 999 2U4 PFE . C 3 HOH A 1 1001 1 HOH HOH . C 3 HOH A 2 1002 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C41 2U4 . . . B 2 -41.127 12.573 -4.63 1 120.55 ? C41 2U4 901 A 1 HETATM 2 C C42 2U4 . . . B 2 -41.899 10.471 -2.901 1 121.91 ? C42 2U4 901 A 1 HETATM 3 C C7 2U4 . . . B 2 -33.645 10.961 7.763 1 72.71 ? C7 2U4 901 A 1 HETATM 4 C C40 2U4 . . . B 2 -40.222 12.062 -3.693 1 122.1 ? C40 2U4 901 A 1 HETATM 5 C C39 2U4 . . . B 2 -40.6 10.985 -2.836 1 122.31 ? C39 2U4 901 A 1 HETATM 6 C C44 2U4 . . . B 2 -42.428 12.062 -4.677 1 120.75 ? C44 2U4 901 A 1 HETATM 7 C C43 2U4 . . . B 2 -42.813 11.012 -3.818 1 121.79 ? C43 2U4 901 A 1 HETATM 8 C C8 2U4 . . . B 2 -34.998 10.964 7.653 1 78.49 ? C8 2U4 901 A 1 HETATM 9 C C10 2U4 . . . B 2 -34.89 11.978 9.646 1 73.84 ? C10 2U4 901 A 1 HETATM 10 C C35 2U4 . . . B 2 -38.801 12.34 -3.383 1 122.63 ? C35 2U4 901 A 1 HETATM 11 C C36 2U4 . . . B 2 -39.387 10.631 -2.054 1 120.93 ? C36 2U4 901 A 1 HETATM 12 C C25 2U4 . . . B 2 -32.944 10.436 2.957 1 74.77 ? C25 2U4 901 A 1 HETATM 13 C C12 2U4 . . . B 2 -35.743 10.415 6.484 1 85.61 ? C12 2U4 901 A 1 HETATM 14 C C1 2U4 . . . B 2 -35.319 11.99 -0.063 1 95.98 ? C1 2U4 901 A 1 HETATM 15 C C13 2U4 . . . B 2 -34.95 9.672 5.484 1 84.49 ? C13 2U4 901 A 1 HETATM 16 C C30 2U4 . . . B 2 -34.264 12.868 -0.584 1 91.91 ? C30 2U4 901 A 1 HETATM 17 C C4 2U4 . . . B 2 -36.482 10.046 -2.151 1 112.74 ? C4 2U4 901 A 1 HETATM 18 C C17 2U4 . . . B 2 -40.096 10.437 5.864 1 108.85 ? C17 2U4 901 A 1 HETATM 19 C C18 2U4 . . . B 2 -39.463 10.096 3.478 1 101.51 ? C18 2U4 901 A 1 HETATM 20 C C19 2U4 . . . B 2 -38.85 12.21 4.537 1 103.84 ? C19 2U4 901 A 1 HETATM 21 C C2 2U4 . . . B 2 -36.779 12.019 -0.499 1 103.02 ? C2 2U4 901 A 1 HETATM 22 C C28 2U4 . . . B 2 -34.809 9.105 1.945 1 86.77 ? C28 2U4 901 A 1 HETATM 23 C C24 2U4 . . . B 2 -34.06 9.472 3.23 1 79.68 ? C24 2U4 901 A 1 HETATM 24 C C3 2U4 . . . B 2 -36.989 11.444 -1.914 1 110.81 ? C3 2U4 901 A 1 HETATM 25 C C16 2U4 . . . B 2 -39.021 10.707 4.812 1 104.08 ? C16 2U4 901 A 1 HETATM 26 N N9 2U4 . . . B 2 -35.626 11.512 8.689 1 76.68 ? N9 2U4 901 A 1 HETATM 27 N N14 2U4 . . . B 2 -37.032 10.625 6.318 1 93.36 ? N14 2U4 901 A 1 HETATM 28 N N26 2U4 . . . B 2 -34.874 11.161 0.811 1 94.23 ? N26 2U4 901 A 1 HETATM 29 N N34 2U4 . . . B 2 -38.375 11.473 -2.423 1 118.51 ? N34 2U4 901 A 1 HETATM 30 N N11 2U4 . . . B 2 -35.397 12.575 10.785 1 76.14 ? N11 2U4 901 A 1 HETATM 31 N N23 2U4 . . . B 2 -34.912 10.12 4.218 1 79.9 ? N23 2U4 901 A 1 HETATM 32 O O31 2U4 . . . B 2 -34.415 14.076 -0.628 1 90.91 ? O31 2U4 901 A 1 HETATM 33 O O33 2U4 . . . B 2 -36.483 9.206 -1.255 1 114.79 ? O33 2U4 901 A 1 HETATM 34 O O20 2U4 . . . B 2 -40.045 9.396 6.519 1 110.77 ? O20 2U4 901 A 1 HETATM 35 O O37 2U4 . . . B 2 -38.15 13.24 -3.897 1 125.22 ? O37 2U4 901 A 1 HETATM 36 O O38 2U4 . . . B 2 -39.343 9.732 -1.22 1 120.25 ? O38 2U4 901 A 1 HETATM 37 O O29 2U4 . . . B 2 -33.056 11.604 3.244 1 72.1 ? O29 2U4 901 A 1 HETATM 38 O O22 2U4 . . . B 2 -34.318 8.696 5.846 1 87.7 ? O22 2U4 901 A 1 HETATM 39 O O32 2U4 . . . B 2 -33.196 12.362 -0.92 1 90.66 ? O32 2U4 901 A 1 HETATM 40 O O5 2U4 . . . B 2 -36.144 9.759 -3.291 1 112.17 ? O5 2U4 901 A 1 HETATM 41 O O21 2U4 . . . B 2 -41.022 11.229 6.074 1 109.17 ? O21 2U4 901 A 1 HETATM 42 O O45 2U4 . . . B 2 -43.325 12.587 -5.554 1 120.21 ? O45 2U4 901 A 1 HETATM 43 O O46 2U4 . . . B 2 -44.079 10.514 -3.87 1 121.83 ? O46 2U4 901 A 1 HETATM 44 O O27 2U4 . . . B 2 -35.629 10.182 1.488 1 92.02 ? O27 2U4 901 A 1 HETATM 45 O O15 2U4 . . . B 2 -37.753 10.105 5.189 1 100.47 ? O15 2U4 901 A 1 HETATM 46 S S6 2U4 . . . B 2 -33.188 11.721 9.286 1 69.31 ? S6 2U4 901 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #