data_4OOO # _model_server_result.job_id ybDV1gMztR9YPRqC9w7lkQ _model_server_result.datetime_utc '2024-10-12 14:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ooo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4OOO # _exptl.entry_id 4OOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.222 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrakis(acetato)chloridodiruthenium(II,III) _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OOO _cell.length_a 78.292 _cell.length_b 78.292 _cell.length_c 37.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc5 A OD2 ASP 101 A ASP 101 1_555 E RU2 RU0 . A RU0 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 A OD1 ASP 101 A ASP 101 1_555 E RU1 RU0 . A RU0 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc7 A OD2 ASP 119 A ASP 119 1_555 F RU2 RU0 . A RU0 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc8 A OD1 ASP 119 A ASP 119 1_555 F RU1 RU0 . A RU0 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 D NA NA . A NA 203 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 D NA NA . A NA 203 1_555 G O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc11 E RU1 RU0 . A RU0 204 1_555 G O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc12 E RU2 RU0 . A RU0 204 1_555 G O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc13 E RU1 RU0 . A RU0 204 1_555 G O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? metalc ? metalc14 E RU2 RU0 . A RU0 204 1_555 G O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc15 E RU1 RU0 . A RU0 204 1_555 G O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc16 F RU2 RU0 . A RU0 205 1_555 G O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc17 F RU1 RU0 . A RU0 205 1_555 G O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc18 F RU2 RU0 . A RU0 205 1_555 G O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc19 F RU1 RU0 . A RU0 205 1_555 G O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'C8 H12 Cl2 O8 Ru2' _chem_comp.formula_weight 509.222 _chem_comp.id RU0 _chem_comp.mon_nstd_flag . _chem_comp.name Tetrakis(acetato)chloridodiruthenium(II,III) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 RU0 doub 277 n n C1 C6 RU0 sing 278 n n O1 C1 RU0 sing 279 n n RU1 O1 RU0 sing 280 n n RU1 O33 RU0 sing 281 n n RU1 O22 RU0 sing 282 n n RU1 RU2 RU0 doub 283 n n RU1 O7 RU0 sing 284 n n RU1 CL2 RU0 sing 285 n n C2 O2 RU0 sing 286 n n O2 RU2 RU0 sing 287 n n RU2 O3 RU0 sing 288 n n RU2 O11 RU0 sing 289 n n RU2 O8 RU0 sing 290 n n RU2 CL1 RU0 sing 291 n n C3 O3 RU0 doub 292 n n C20 C2 RU0 sing 293 n n C20 H20 RU0 sing 294 n n C20 H20A RU0 sing 295 n n C20 H9 RU0 sing 296 n n O22 C2 RU0 doub 297 n n C30 C3 RU0 sing 298 n n C30 H30 RU0 sing 299 n n C30 H30A RU0 sing 300 n n C30 H12 RU0 sing 301 n n O33 C3 RU0 sing 302 n n C6 H1 RU0 sing 303 n n C6 H2 RU0 sing 304 n n C6 H3 RU0 sing 305 n n O7 C7 RU0 doub 306 n n O8 C7 RU0 sing 307 n n C7 C8 RU0 sing 308 n n C8 H4 RU0 sing 309 n n C8 H5 RU0 sing 310 n n C8 H6 RU0 sing 311 n n # _atom_sites.entry_id 4OOO _atom_sites.fract_transf_matrix[1][1] 0.012773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 3 NA A 1 203 10 NA NA . E 4 RU0 A 1 204 13 RU0 ACT . F 4 RU0 A 1 205 5 RU0 RU . G 5 HOH A 1 301 1 HOH HOH . G 5 HOH A 2 302 2 HOH HOH . G 5 HOH A 3 303 3 HOH HOH . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 5 HOH HOH . G 5 HOH A 6 306 6 HOH HOH . G 5 HOH A 7 307 7 HOH HOH . G 5 HOH A 8 308 9 HOH HOH . G 5 HOH A 9 309 10 HOH HOH . G 5 HOH A 10 310 11 HOH HOH . G 5 HOH A 11 311 12 HOH HOH . G 5 HOH A 12 312 13 HOH HOH . G 5 HOH A 13 313 14 HOH HOH . G 5 HOH A 14 314 15 HOH HOH . G 5 HOH A 15 315 16 HOH HOH . G 5 HOH A 16 316 17 HOH HOH . G 5 HOH A 17 317 18 HOH HOH . G 5 HOH A 18 318 19 HOH HOH . G 5 HOH A 19 319 20 HOH HOH . G 5 HOH A 20 320 21 HOH HOH . G 5 HOH A 21 321 22 HOH HOH . G 5 HOH A 22 322 23 HOH HOH . G 5 HOH A 23 323 24 HOH HOH . G 5 HOH A 24 324 25 HOH HOH . G 5 HOH A 25 325 26 HOH HOH . G 5 HOH A 26 326 27 HOH HOH . G 5 HOH A 27 327 29 HOH HOH . G 5 HOH A 28 328 30 HOH HOH . G 5 HOH A 29 329 31 HOH HOH . G 5 HOH A 30 330 32 HOH HOH . G 5 HOH A 31 331 33 HOH HOH . G 5 HOH A 32 332 34 HOH HOH . G 5 HOH A 33 333 35 HOH HOH . G 5 HOH A 34 334 36 HOH HOH . G 5 HOH A 35 335 37 HOH HOH . G 5 HOH A 36 336 38 HOH HOH . G 5 HOH A 37 337 39 HOH HOH . G 5 HOH A 38 338 40 HOH HOH . G 5 HOH A 39 339 41 HOH HOH . G 5 HOH A 40 340 42 HOH HOH . G 5 HOH A 41 341 43 HOH HOH . G 5 HOH A 42 342 44 HOH HOH . G 5 HOH A 43 343 45 HOH HOH . G 5 HOH A 44 344 46 HOH HOH . G 5 HOH A 45 345 47 HOH HOH . G 5 HOH A 46 346 48 HOH HOH . G 5 HOH A 47 347 49 HOH HOH . G 5 HOH A 48 348 50 HOH HOH . G 5 HOH A 49 349 51 HOH HOH . G 5 HOH A 50 350 53 HOH HOH . G 5 HOH A 51 351 54 HOH HOH . G 5 HOH A 52 352 55 HOH HOH . G 5 HOH A 53 353 56 HOH HOH . G 5 HOH A 54 354 57 HOH HOH . G 5 HOH A 55 355 58 HOH HOH . G 5 HOH A 56 356 59 HOH HOH . G 5 HOH A 57 357 60 HOH HOH . G 5 HOH A 58 358 61 HOH HOH . G 5 HOH A 59 359 62 HOH HOH . G 5 HOH A 60 360 63 HOH HOH . G 5 HOH A 61 361 65 HOH HOH . G 5 HOH A 62 362 66 HOH HOH . G 5 HOH A 63 363 67 HOH HOH . G 5 HOH A 64 364 69 HOH HOH . G 5 HOH A 65 365 70 HOH HOH . G 5 HOH A 66 366 71 HOH HOH . G 5 HOH A 67 367 73 HOH HOH . G 5 HOH A 68 368 74 HOH HOH . G 5 HOH A 69 369 75 HOH HOH . G 5 HOH A 70 370 76 HOH HOH . G 5 HOH A 71 371 79 HOH HOH . G 5 HOH A 72 372 80 HOH HOH . G 5 HOH A 73 373 81 HOH HOH . G 5 HOH A 74 374 82 HOH HOH . G 5 HOH A 75 375 83 HOH HOH . G 5 HOH A 76 376 84 HOH HOH . G 5 HOH A 77 377 85 HOH HOH . G 5 HOH A 78 378 86 HOH HOH . G 5 HOH A 79 379 87 HOH HOH . G 5 HOH A 80 380 88 HOH HOH . G 5 HOH A 81 381 91 HOH HOH . G 5 HOH A 82 382 92 HOH HOH . G 5 HOH A 83 383 93 HOH HOH . G 5 HOH A 84 384 94 HOH HOH . G 5 HOH A 85 385 95 HOH HOH . G 5 HOH A 86 386 96 HOH HOH . G 5 HOH A 87 387 97 HOH HOH . G 5 HOH A 88 388 98 HOH HOH . G 5 HOH A 89 389 99 HOH HOH . G 5 HOH A 90 390 100 HOH HOH . G 5 HOH A 91 391 3 HOH HOH . G 5 HOH A 92 392 4 HOH HOH . G 5 HOH A 93 393 521 HOH HOH . G 5 HOH A 94 394 621 HOH HOH . G 5 HOH A 95 395 520 HOH HOH . G 5 HOH A 96 396 620 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RU RU1 RU0 . . . F 4 -33.983 -3.837 -23.357 0.5 35.01 ? RU1 RU0 205 A 1 HETATM 2 C C2 RU0 . . . F 4 -31.384 -3.343 -22.391 0.5 32.39 ? C2 RU0 205 A 1 HETATM 3 O O2 RU0 . . . F 4 -32.123 -2.952 -21.47 0.5 33.47 ? O2 RU0 205 A 1 HETATM 4 RU RU2 RU0 . . . F 4 -34.085 -2.516 -21.46 0.5 36.43 ? RU2 RU0 205 A 1 HETATM 5 C C3 RU0 . . . F 4 -36.572 -2.591 -22.442 0.5 37.08 ? C3 RU0 205 A 1 HETATM 6 O O3 RU0 . . . F 4 -36.06 -2.068 -21.405 0.5 37.1 ? O3 RU0 205 A 1 HETATM 7 C C20 RU0 . . . F 4 -29.902 -3.15 -22.466 0.5 32.05 ? C20 RU0 205 A 1 HETATM 8 O O22 RU0 . . . F 4 -31.994 -3.943 -23.274 0.5 32.62 ? O22 RU0 205 A 1 HETATM 9 C C30 RU0 . . . F 4 -38.041 -2.862 -22.636 0.5 37.43 ? C30 RU0 205 A 1 HETATM 10 O O33 RU0 . . . F 4 -35.76 -2.904 -23.326 0.5 36.43 ? O33 RU0 205 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #