data_4OOZ # _model_server_result.job_id 89huLG_e7PAIswv16w29mg _model_server_result.datetime_utc '2024-11-05 01:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ooz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 4OOZ # _exptl.entry_id 4OOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4OOZ _cell.length_a 74.023 _cell.length_b 82.453 _cell.length_c 164.324 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,I 1 1 B,E,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BMA BMA C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA BMA C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O4 HO4 . sing 4 ? 3 2 1 BMA BMA C1 O1 . O4 HO4 . sing 5 ? 3 3 2 BMA BMA C1 O1 . O4 HO4 . sing 6 ? 3 4 3 BMA BMA C1 O1 . O4 HO4 . sing 7 ? 3 5 4 BMA BMA C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BMA 1 C 1 BMA C 4 BMA 2 n C BMA 2 C 2 BMA C 3 BMA 2 n C BMA 3 C 3 BMA C 2 BMA 2 n C BMA 4 C 4 BMA C 1 BMA 3 n D BMA 1 D 1 BMA C 10 BMA 3 n D BMA 2 D 2 BMA C 9 BMA 3 n D BMA 3 D 3 BMA C 8 BMA 3 n D BMA 4 D 4 BMA C 7 BMA 3 n D BMA 5 D 5 BMA C 6 BMA 2 n E BMA 1 E 1 BMA C 15 BMA 2 n E BMA 2 E 2 BMA C 14 BMA 2 n E BMA 3 E 3 BMA C 13 BMA 2 n E BMA 4 E 4 BMA C 12 BMA 3 n F BMA 1 F 1 BMA C 20 BMA 3 n F BMA 2 F 2 BMA C 19 BMA 3 n F BMA 3 F 3 BMA C 18 BMA 3 n F BMA 4 F 4 BMA C 17 BMA 3 n F BMA 5 F 5 BMA C 16 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 A CYS 195 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 317 A CYS 317 1_555 A SG CYS 349 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 195 B CYS 195 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 317 B CYS 317 1_555 B SG CYS 349 B CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 C O4 BMA . C BMA 1 1_555 C C1 BMA . C BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 C O4 BMA . C BMA 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C O4 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 D O4 BMA . D BMA 1 1_555 D C1 BMA . D BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 D O4 BMA . D BMA 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 D O4 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D O4 BMA . D BMA 4 1_555 D C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 E O4 BMA . E BMA 1 1_555 E C1 BMA . E BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 E O4 BMA . E BMA 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale10 E O4 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale11 F O4 BMA . F BMA 1 1_555 F C1 BMA . F BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 F O4 BMA . F BMA 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 F O4 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 F O4 BMA . F BMA 4 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 70 n n C1 O1 BMA sing 71 n n C1 O5 BMA sing 72 n n C1 H1 BMA sing 73 n n C2 C3 BMA sing 74 n n C2 O2 BMA sing 75 n n C2 H2 BMA sing 76 n n C3 C4 BMA sing 77 n n C3 O3 BMA sing 78 n n C3 H3 BMA sing 79 n n C4 C5 BMA sing 80 n n C4 O4 BMA sing 81 n n C4 H4 BMA sing 82 n n C5 C6 BMA sing 83 n n C5 O5 BMA sing 84 n n C5 H5 BMA sing 85 n n C6 O6 BMA sing 86 n n C6 H61 BMA sing 87 n n C6 H62 BMA sing 88 n n O1 HO1 BMA sing 89 n n O2 HO2 BMA sing 90 n n O3 HO3 BMA sing 91 n n O4 HO4 BMA sing 92 n n O6 HO6 BMA sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4OOZ _atom_sites.fract_transf_matrix[1][1] 0.013509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 BMA A 1 405 5 BMA BMA . H 4 BMA B 1 401 11 BMA BMA . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 502 502 HOH HOH . I 5 HOH A 3 503 503 HOH HOH . I 5 HOH A 4 504 504 HOH HOH . I 5 HOH A 5 505 505 HOH HOH . I 5 HOH A 6 506 506 HOH HOH . I 5 HOH A 7 507 507 HOH HOH . I 5 HOH A 8 508 508 HOH HOH . I 5 HOH A 9 509 509 HOH HOH . I 5 HOH A 10 510 510 HOH HOH . I 5 HOH A 11 511 511 HOH HOH . I 5 HOH A 12 512 512 HOH HOH . I 5 HOH A 13 513 513 HOH HOH . I 5 HOH A 14 514 514 HOH HOH . I 5 HOH A 15 515 515 HOH HOH . I 5 HOH A 16 516 516 HOH HOH . I 5 HOH A 17 517 517 HOH HOH . I 5 HOH A 18 518 518 HOH HOH . I 5 HOH A 19 519 519 HOH HOH . I 5 HOH A 20 520 520 HOH HOH . I 5 HOH A 21 521 521 HOH HOH . I 5 HOH A 22 522 522 HOH HOH . I 5 HOH A 23 523 524 HOH HOH . I 5 HOH A 24 524 525 HOH HOH . I 5 HOH A 25 525 526 HOH HOH . I 5 HOH A 26 526 527 HOH HOH . I 5 HOH A 27 527 528 HOH HOH . I 5 HOH A 28 528 529 HOH HOH . I 5 HOH A 29 529 530 HOH HOH . I 5 HOH A 30 530 531 HOH HOH . I 5 HOH A 31 531 532 HOH HOH . I 5 HOH A 32 532 533 HOH HOH . I 5 HOH A 33 533 534 HOH HOH . I 5 HOH A 34 534 535 HOH HOH . I 5 HOH A 35 535 536 HOH HOH . I 5 HOH A 36 536 537 HOH HOH . I 5 HOH A 37 537 538 HOH HOH . I 5 HOH A 38 538 539 HOH HOH . I 5 HOH A 39 539 540 HOH HOH . I 5 HOH A 40 540 541 HOH HOH . I 5 HOH A 41 541 542 HOH HOH . I 5 HOH A 42 542 543 HOH HOH . I 5 HOH A 43 543 545 HOH HOH . I 5 HOH A 44 544 547 HOH HOH . I 5 HOH A 45 545 528 HOH HOH . J 5 HOH B 1 501 501 HOH HOH . J 5 HOH B 2 502 502 HOH HOH . J 5 HOH B 3 503 503 HOH HOH . J 5 HOH B 4 504 504 HOH HOH . J 5 HOH B 5 505 505 HOH HOH . J 5 HOH B 6 506 506 HOH HOH . J 5 HOH B 7 507 507 HOH HOH . J 5 HOH B 8 508 508 HOH HOH . J 5 HOH B 9 509 509 HOH HOH . J 5 HOH B 10 510 510 HOH HOH . J 5 HOH B 11 511 511 HOH HOH . J 5 HOH B 12 512 512 HOH HOH . J 5 HOH B 13 513 513 HOH HOH . J 5 HOH B 14 514 515 HOH HOH . J 5 HOH B 15 515 516 HOH HOH . J 5 HOH B 16 516 517 HOH HOH . J 5 HOH B 17 517 518 HOH HOH . J 5 HOH B 18 518 519 HOH HOH . J 5 HOH B 19 519 520 HOH HOH . J 5 HOH B 20 520 521 HOH HOH . J 5 HOH B 21 521 522 HOH HOH . J 5 HOH B 22 522 523 HOH HOH . J 5 HOH B 23 523 524 HOH HOH . J 5 HOH B 24 524 525 HOH HOH . J 5 HOH B 25 525 526 HOH HOH . J 5 HOH B 26 526 529 HOH HOH . J 5 HOH B 27 527 530 HOH HOH . J 5 HOH B 28 528 531 HOH HOH . J 5 HOH B 29 529 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . G 4 -16.757 -7.239 2.117 1 36.66 ? C1 BMA 405 A 1 HETATM 2 C C2 BMA . . . G 4 -16.217 -5.959 2.68 1 37.87 ? C2 BMA 405 A 1 HETATM 3 C C3 BMA . . . G 4 -14.774 -5.811 2.26 1 39.04 ? C3 BMA 405 A 1 HETATM 4 C C4 BMA . . . G 4 -13.955 -7.042 2.67 1 39.58 ? C4 BMA 405 A 1 HETATM 5 C C5 BMA . . . G 4 -14.646 -8.357 2.263 1 38.29 ? C5 BMA 405 A 1 HETATM 6 C C6 BMA . . . G 4 -14.013 -9.548 2.947 1 39.01 ? C6 BMA 405 A 1 HETATM 7 O O1 BMA . . . G 4 -18.067 -7.342 2.595 1 35.85 ? O1 BMA 405 A 1 HETATM 8 O O2 BMA . . . G 4 -16.196 -6.053 4.097 1 38.58 ? O2 BMA 405 A 1 HETATM 9 O O3 BMA . . . G 4 -14.187 -4.643 2.828 1 41.93 ? O3 BMA 405 A 1 HETATM 10 O O4 BMA . . . G 4 -12.673 -6.989 2.056 1 42.06 ? O4 BMA 405 A 1 HETATM 11 O O5 BMA . . . G 4 -16.039 -8.329 2.634 1 37.19 ? O5 BMA 405 A 1 HETATM 12 O O6 BMA . . . G 4 -12.754 -9.159 3.482 1 40.71 ? O6 BMA 405 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #